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OCB Scoping Workshop: Improving predictive biogeochemical models through single cell-based analyses of marine plankton physiological plasticity, genetic diversity and evolutionary processes

Bigelow Laboratory for Ocean Sciences, May 28-30, 2014

The global ocean is currently undergoing significant changes, from the acidification of surface seawater to expansion of mid-water oxygen minimum zones to changes in vertical stratification and nutrient inputs.  Understanding these present changes and prediction of their impact on marine plankton-driven biogeochemical processes requires detailed information at the level of the individual organism, such as their physiological traits, characteristics, rate processes and plasticity to respond to environmental change.  Recent progress in various single cell and population-level analytical techniques offers an opportunity to bridge this knowledge gap.

This scoping workshop brought together scientists with complementary interests in observing and/or modeling specific traits and physiological characteristics and rates in marine plankton. The objectives of the workshop were to summarize our current state of knowledge of physiological observations in single cells and taxonomic populations from the environment, identify impediments to filling this knowledge gap (including data handling and analysis), and discuss future research areas. The workshop provided opportunities for the ocean science community to formulate a forward-looking vision on future research directions regarding the roles of genetic diversity, physiological plasticity and evolutionary processes in marine biogeochemical cycles.

Workshop Products

Several workshop participants contributed to published papers that emerged from discussions that took place at the workshop:

Baker, K. G., C. M. Robinson, D. T. Radford, A. S. McInnes, C. Evenhuis, M. A. Doblin (2016). Thermal Performance Curves of Functional Traits Aid Understanding of Thermally Induced Changes in Diatom-Mediated Biogeochemical Fluxes. Front. Mar. Sci., https://doi.org/10.3389/fmars.2016.00044.

Kujawinski, E. B., K. Longnecker, K. L. Barott, R. J. M. Weber, M. C. Kido Soule (2016). Microbial Community Structure Affects Marine Dissolved Organic Matter Composition. Front. Mar. Sci., https://doi.org/10.3389/fmars.2016.00045.

Krupke, A., L. R. Hmelo, J. E. Ossolinski, T. J. Mincer, B. A. S. Van Mooy (2016). Quorum Sensing Plays a Complex Role in Regulating the Enzyme Hydrolysis Activity of Microbes Associated with Sinking Particles in the Ocean. Front. Mar. Sci., https://doi.org/10.3389/fmars.2016.00055.

View workshop agenda

Scientific Steering Committee

Chair: Mike Lomas, Bigelow Laboratory for Ocean Science

Stephanie Dutkiewicz, MIT

Steve Giovannoni, Oregon State University

Adrian Marchetti, University of North Carolina at Chapel Hill

Adam Martiny, University of California Irvine

Susanne Neuer, Arizona State University

Ramunas Stepanauskas, Bigelow Laboratory for Ocean Science

Allison Taylor, University North Carolina – Wilmington

Ben Twining, Bigelow Laboratory for Ocean Science

Science Themes and Workshop Structure

The focus of this workshop is to synthesize information from single cell methods (e.g., single-cell X-ray fluorescence, NanoSIMS) and methods that resolve discrete populations (e.g., flow cytometric sorting and secondary analyses), identify unique biological traits at these levels, and determine what those traits mean to ocean biogeochemistry now and in the future.  The success of this workshop will come from bringing together scientists with a broad set of skills and points of view, with the overarching focus on the use of single cell-level analyses in ecosystem-level models.

This OCB scoping workshop is focused around two interrelated broad themes:

1) Taxon-specific physiological responses of marine microbes and phytoplankton in the current and a changing environment;

2) Interactions and feedbacks between plankton physiological plasticity and taxonomic diversity and the impact on global ocean biogeochemical cycles

 

Breakout group discussions will be centered on the following questions:

1) What are the ranges and controls on taxon-specific nutrient uptake rates, elemental quotas and standing stocks?

2) Do taxonomic diversity and physiological plasticity have similar or different impacts on ocean biogeochemistry, particularly the production and export of particulate organic matter from the surface ocean?

3) What roles do taxonomic diversity and physiological plasticity play in governing the response of planktonic communities to environmental stressors, for example, oxygen minimum zones, ocean acidification, ocean warming, stratification and changing nutrient concentrations?

4) What type of single cell-specific and population-level data is required for the mechanistic understanding and predictive modeling of marine biogeochemistry? How does it compare to the data collected now? Can we recommend improvements?

Each breakout group will be tasked with collating information on several points to further enhance the continuity between groups and relationships to the broader themes.  Specifically, each group will 1) summarize current state of knowledge; 2) identify limitations to forward progress on the topic; and 3) describe appropriate and suitable sampling platforms and technologies, and 4) propose strategies for moving the field forward.

Related Literature

Baines, S.B., B.S. Twining, M.A. Brzezinski, D.M. Nelson, and N.S. Fisher. 2010. The causes and biogeochemical implications of regional differences in silicification of marine diatoms. Global Biogeochemical Cycles. doi: 10.1029/2010GB003856.

Casey, J., Lomas, M.W., Mandecki, J., and Walker, D.E.  2007.  Prochlorococcus contributes to new production in the Sargasso Sea deep chlorophyll maximum.  Geophysical Research Letters, 34, L10604, doi:10.1029/2006GL028725.

Grote,G., Thrash, J.C., Huggett, M.J., Landry, .Z.C., Carini, P., Giovannoni, S.J., Rappé, M.S. 2012. Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade. mBio. 3, doi:10.1128/mBio.00252-12.

Fawcett, S.E., Lomas, M.W., Casey, J.R., Ward, B.B., Sigman, D.M. 2011. Eukaryotes dominate new production in the Sargasso Sea.  Nature Geosciences, 4: 717-722.

Follows, M.J., Dutkiewicz, S., 2011. Modeling diverse communities of marine microbes. Annual Review of Marine Science 3, 427-451.

Martiny, A.C., Pham, C.,Primeau, F., Vrugt, J., Levin, S., Lomas, M.W. 2013. Strong latitudinal patterns in elemental composition of marine plankton and organic matter. Nature Geoscience. 6:279-283.

Mincer, T.J., Church, M.J., Taylor, L.T., Preston, C., Karl, D.M., DeLong, E.F. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environmental Microbiology, 9: 1162-1175.

Shapiro, B.J., Freidman, J., Cordero, O.X., Preheim, S.P., Timberlake, S.C., Szabo, G., Polz, M.F., Alm, E.J. 2012. Population Genomics of Early Events in the Ecological Differentiation of Bacteria. Science, 336, 48: DOI: 10.1126/science.1218198.

Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba,A., Woyke, T., Lamy, D., Reinthaler, T., Poulton, N.J., Masland, E.D.P., Gomez, M.L., Sieracki, M.E., DeLong, E.F., Herndl, G.J., Stepanauskas1, R. 2011. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science, 333, DOI: 10.1126/science.1203690.

Stepanauskas, R. 2011. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science, 333, DOI: 10.1126/science.1203690.

Twining, B.S., D. Nuñez-Milland, S. Vogt, R.S. Johnson, and P.N. Sedwick. 2010. Variations in Synechococcus cell quotas of phosphorus, sulfur, manganese, iron, nickel and zinc within mesoscale eddies in the Sargasso Sea. Limnology & Oceanography. 55: 492-506.

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