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Archive for primary productivity

Net primary production from daily cycles of biomass using Argo floats

Posted by mmaheigan

· Thursday, August 31st, 2023

Net primary productivity is a central metric in ocean biogeochemistry that is costly and time-consuming to estimate using traditional water sampling methods. As a result, it is difficult to detect large-scale trends in ocean productivity. While satellite remote-sensing has partially solved this issue, its observations are limited to the top 10 to 40 m of the ocean and require assumptions about the depth profile of productivity.

Figure 1. (A) A map of BGC-Argo float profiles of particle backscattering where only floats deemed to contain samples from all hours of the day over its lifetime were shown. (BE) The hourly median (black points) and standard error (black vertical lines) of carbon biomass, estimated from particle backscatter. Over a 24-hour period, carbon biomass shows a net accumulation during the day (white space) and net loss during the night (gray space). This daily rhythm in biomass was used to infer gross primary productivity from a sinusoidal model fit that assumes productivity scales with light, community respiration is constant, and net community production is zero. (FI) Profiles of net primary productivity, shown with one standard error (shaded region), can be inferred from these daily cycles available for each depth and region. To estimate net primary production, we estimate gross oxygen production from gross primary (carbon) productivity assuming a photosynthetic quotient of 1.4 and that dissolved primary production is a third of total primary production. We then used an empirical ratio (equal to 2.7) to convert gross oxygen production to net primary productivity.

Our study addresses this problem by using BGC-Argo floats to estimate the in situ vertical structure of net primary productivity inferred from daily cycles of carbon biomass (Fig. 1). Although typical floats collect profiles every 5 or 10 days, it is possible to reconstruct the daily cycle in biomass by combining profiles from many floats that measure non-integer profiling frequencies (e.g., 5.2 or 10.2 days). These floats collect each subsequent profile at a different hour of the day, such that all hours of the day are about equally represented over the floats’ lifetimes. Combining enough of these floats’ profiles, the small daily variations in carbon biomass can be detected and used to infer net primary productivity. We demonstrate this for various depths, regions, and seasons.

Our approach provides low-cost, ground-truthed information throughout the water column across large expanses of the ocean and under various conditions (e.g., clouds, sea ice, or polar night), addressing some of the limitations of satellite or ship observations. We argue that the combination of BGC-Argo with satellite imagery will provide an invaluable tool for assessing large-scale trends in net primary production that may arise from climate change and other environmental purturbations.

Authors
Adam Stoer and Katja Fennel (Dalhousie University)

Dalhousie’s Marine Environmental Modelling Group: memg.ocean.dal.ca

Is it a shift of the surface ecosystem toward small cells in the eastern North Pacific subtropical gyre?

Posted by mmaheigan

· Friday, August 26th, 2022

The eastern North Pacific subtropical gyre (NPSG) ecosystem contains a large proportion of the ocean surface, resulting in a significant impact on the global ocean primary production and export production. The NPSG is influenced by the interannual climate variabilities of the Pacific decadal oscillation and North Pacific gyre oscillation (NPGO). In particular, a recent report associated the NPGO mode with favorable physical conditions for phytoplankton growth in the eastern NPSG environment. However, the NPGO mode-driven changes in the relationship between primary production and export production and the processes driving these changes remain unclear in the eastern NPSG environment.

A study published in Frontiers in Marine Science investigated the temporal changes in the physical-biogeochemical-ecological responses in the surface eastern NPSG to the NPGO mode, using a suite of oceanographic measurements from Station ALOHA (22.75°N and 158°W) from 1992–2018. When the NPGO mode was in positive phases (N₂⁺: 1998‒2004, N₄⁺: 2007‒2013), the eastern region of NPSG was related to deepened mixed layer depth, conducive to high primary production. Accordingly, the N₂⁺ phase showed a high export production, associated with increase in nano-sized phytoplankton group and inorganic and organic nitrogen-to-phosphorus (N:P) ratios. However, even under the conditions of deep mixed layer depth and increased primary production, the N₄⁺phase has a low export production. This difference is attributed to multiple physical and biogeochemical factors, such as the depression of thermocline, shift toward the pico-sized phytoplankton group, increase in smallest-sized mesozooplankton and heterotrophic bacteria, and decrease in N:P ratios. Under high stratification induced by prolonged warming, these results suggest that the future surface eastern NPSG may experience a permanent shift toward small cells (Figure 1), leading to a reduction in the biological pump.

Authors:
Joo-Eun Yoon (University of Cambridge)
Ju-Hyoung Kim (Kunsan National University)
Il-Nam Kim (Incheon National University)

How does the competition between phytoplankton and bacteria for iron alter ocean biogeochemical cycles?

Posted by mmaheigan

· Friday, August 26th, 2022

Free-living bacteria play a key role in cycling essential biogeochemical resources in the ocean, including iron, via their uptake, transformation, and release of organic matter throughout the water column. Bacteria process half of the ocean’s primary production, remineralize dissolved organic matter, and re-direct otherwise lost organic matter to higher trophic levels. For these reasons, it is crucial to understand what factors limit the growth of bacteria and how bacteria activities impact global ocean biogeochemical cycles.

In a recent study, Pham and colleagues used a global ocean ecosystem model to dive into how iron limits the growth of free-living marine bacteria, how bacteria modulate ocean iron cycling, and the consequences to marine ecosystems of the competition between bacteria and phytoplankton for iron.

Figure 1: (a) Iron limitation status of bacteria in December, January, and February (DJF) in the surface ocean. Low values (in blue color = close to zero) mean that iron is the limiting factor for the growth of bacteria; (b) Bacterial iron consumption in the upper 120m of the ocean and (c) Changes (anomalies) in export carbon production when bacteria have a high requirement for iron.

Through a series of computer simulations performed in the global ocean ecosystem model, the authors found that iron is a limiting factor for bacterial growth in iron-limited regions in the Southern Ocean, the tropical, and the subarctic Pacific due to the high iron requirement and iron uptake capability of bacteria. Bacteria act as an iron sink in the upper ocean due to their significant iron consumption, a rate comparable to phytoplankton. The competition between bacteria and phytoplankton for iron alters phytoplankton bloom dynamics, ocean carbon export, and the availability of dissolved organic carbon needed for bacterial growth. These results suggest that earth system models that omit bacteria ignore an important organism modulating biogeochemical responses of the ocean to future changes.

Authors:
Anh Le-Duy Pham (Laboratoire d’Océanographie et de Climatologie: Expérimentation et Approches Numériques (LOCEAN), IPSL, CNRS/UPMC/IRD/MNHN, Paris, France)
Olivier Aumont (Laboratoire d’Océanographie et de Climatologie: Expérimentation et Approches Numériques (LOCEAN), IPSL, CNRS/UPMC/IRD/MNHN, Paris, France)
Lavenia Ratnarajah (University of Liverpool, United Kingdom)
Alessandro Tagliabue (University of Liverpool, United Kingdom)

How atmospheric and oceanographic forcing impact the carbon sequestration in an ultra-oligotrophic marine system

Posted by mmaheigan

· Wednesday, August 11th, 2021

Sinking particles are a critical conduit for the export of material from the surface to the deep ocean. Despite their importance in oceanic carbon cycling, little is known about the composition and seasonal variability of sinking particles which reach abyssal depths. Oligotrophic waters cover ~75% of the ocean surface and contribute over 30% of the global marine carbon fixation. Understanding the processes that control carbon export to the deep oligotrophic areas is crucial to better characterize the strength and efficiency of the biological pump as well as to project the response of these systems to climate fluctuations and anthropogenic perturbations.

In a recent study published in Frontiers in Earth Science, authors synthesized data from atmospheric and oceanographic parameters, together with main mass components, and stable isotope and source-specific lipid biomarker composition of sinking particles collected in the deep Eastern Mediterranean Sea (4285m, Ierapetra Basin) for a three-year period (June 2010-June 2013). In addition, this study compared the sinking particulate flux data with previously reported deep-sea surface sediments from the study area to shed light on the benthic–pelagic coupling.

Figure Caption: a) Biplot of net primary productivity vs export efficiency (top and bottom horizontal dashed lines indicate threshold for high and low export efficiency regimes). b) Biplot of POC-normalized concentrations of terrestrial vs. phytoplankton-derived lipid biomarkers of the sinking particles collected in the deep Eastern Mediterranean Sea (Ierapetra Basin, NW Levantine Basin) from June 2010–June 2013, and surface sediments collected from January 2007 to June 2012 in the study area.

Both seasonal and episodic pulses are crucial for POC export to the deep Eastern Mediterranean Sea. POC fluxes peaked in spring April–May 2012 (12.2 mg m⁻² d⁻¹) related with extreme atmospheric forcing. Overall, summer particle export fuels more efficient carbon sequestration than the other seasons. The results of this study highlight that the combination of extreme weather events and aerosol deposition can trigger an influx of both marine labile carbon and anthropogenic compounds to the deep. Finally, the comparison of the sinking particles flux data with surface sediments revealed an isotopic discrimination, as well as a preferential degradation of labile organic matter during deposition and burial, along with higher preservation of land-derived POC in the underlying sediments. This study provides key knowledge to better understand the export, fate and preservation vs. degradation of organic carbon, and for modeling the organic carbon burial rates in the Mediterranean Sea.

Authors:
Rut Pedrosa-Pamies (The Ecosystems Center, Marine Biological Laboratory, US; Research Group in Marine Geosciences, University of Barcelona, Spain)
Constantine Parinos (Institute of Oceanography, Hellenic Centre for Marine Research, Greece)
Anna Sanchez-Vidal (Group in Marine Geosciences, University of Barcelona, Spain)
Antoni Calafat (Group in Marine Geosciences, University of Barcelona, Spain)
Miquel Canals (Group in Marine Geosciences, University of Barcelona, Spain)
Dimitris Velaoras (Institute of Oceanography, Hellenic Centre for Marine Research, Greece)
Nikolaos Mihalopoulos (Environmental Chemical Processes Laboratory, University of Crete; National Observatory of Athens, Greece)
Maria Kanakidou (Environmental Chemical Processes Laboratory, University of Crete Greece)
Nikolaos Lampadariou (Institute of Oceanography, Hellenic Centre for Marine Research, Greece)
Alexandra Gogou (Institute of Oceanography, Hellenic Centre for Marine Research, Greece)

A new proxy for ocean iron bioavailability

Posted by mmaheigan

· Monday, July 26th, 2021

In many oceanic regions, iron exerts strong control on phytoplankton growth, ecosystem structure and carbon cycling. Yet, iron bioavailability and uptake rates by phytoplankton in the ocean are poorly constrained.

Recently, Shaked et al. (2020) (see GEOTRACES highlight), established a new approach for quantifying the availability of dissolved Fe (dFe) in natural seawater based on its uptake kinetics by Fe-limited cultured phytoplankton. In a follow up study published in GBC, this approach was extended to in situ phytoplankton, establishing a standardized proxy for dFe bioavailability in low-Fe ocean regions.

As explained in the short video lecture above, Yeala Shaked, Ben Twining, and their colleagues have analyzed large datasets collected during 10 research cruises (including 3 GEOTRACES section and process cruises) in multiple ocean regions. Dissolved Fe bioavailability was estimated through single cell Fe uptake rates, calculated by combining measured Fe contents of individual phytoplankton cells collected with concurrently-measured dFe concentrations, as well as modeled growth rates (Figure). Then the authors applied this proxy for: a) comparing dFe bioavailability among organisms and regions; b) calculating dFe uptake rates and residence times in low-Fe oceanic regions; and c) constraining Fe uptake parameters of earth system models to better predict ocean productivity in response to climate-change.

The data suggest that dFe species are highly available in low-Fe settings, likely due to photochemical reactions in sunlit waters.

Figure 1: The new bioavailability proxy (an uptake rate constant-kin-app) was calculated for ~1000 single cells from multiple ocean regions. For each cell, the iron quota was measured with synchrotron x-ray fluorescence (left panel), a growth rate was estimated from the PISCES model for the corresponding phytoplankton group (right panel), and the dissolved Fe concentration was measured concurrently (middle panel).

Authors:
Y. Shaked (Hebrew University and Interuniversity Institute for Marine Sciences)
B.S. Twining (Bigelow Lab)
A. Tagliabue (University of Liverpool)
M.T. Maldonado (University of British Columbia)
K.N. Buck (University of South Florida)
T. Mellett (University of South Florida)

References:
Shaked, Y., Twining, B. S., Tagliabue, A., & Maldonado, M. T. (2021). Probing the bioavailability of dissolved iron to marine eukaryotic phytoplankton using in situ single cell iron quotas. Global Biogeochemical Cycles, e2021GB006979. https://doi.org/10.1029/2021GB006979

Shaked, Y., Buck, K. N., Mellett, T., & Maldonado, M. T. (2020). Insights into the bioavailability of oceanic dissolved Fe from phytoplankton uptake kinetics. The ISME Journal, 1–12. https://doi.org/10.1038/s41396-020-0597-3

Joint highlight with GEOTRACES – read here.

How environmental drivers regulated the long-term evolution of the biological pump

Posted by mmaheigan

· Friday, January 22nd, 2021

The marine biological pump (BP) plays a crucial role in regulating earth’s atmospheric oxygen and carbon dioxide levels by transferring carbon fixed by primary producers into the ocean interior and marine sediments, thereby controlling the habitability of our planet. The rise of multicellular life and eukaryotic algae in the ocean about 700 million years ago would likely have influenced the physical characteristics of oceanic aggregates (e.g., sinking rate), yet the magnitude of the impact this biological innovation had on the efficiency of BP is unknown.

Figure. 1. The impact of biological innovations (left) and environmental factors (atmospheric oxygen level and seawater temperature; right) on the efficiency of marine biological pump (BP). Temperatures are ocean surface temperatures (SST), and atmospheric pO2 is shown relative to the present atmospheric level (PAL). The BP efficiency is calculated as the fraction of carbon exported from the surface ocean that is delivered to the sediment-water interface. The results indicate that evolution of larger sized algae and zooplanktons has little influence on the long-term evolution of biological pump (left panel). The change in the atmospheric oxygen level and seawater surface temperature as environmental factors, on the other hand, have a stronger leverage on the efficiency of biological pump (right panel).

The authors of a recent paper in Nature Geoscience constructed a particle-based stochastic model to explore the change in the efficiency of the BP in response to biological and physical changes in the ocean over geologic time. The model calculates the age of organic particles in each aggregate based on their sinking rates, and considers the impact of primary producer cell size, aggregation, temperature, dust flux, biomineralization, ballasting by mineral phases, oxygen, and the fractal geometry (porosity) of aggregates. The model results demonstrate that while the rise of larger-sized eukaryotes led to an increase in the average sinking rate of oceanic aggregates, its impact on BP efficiency was minor. The evolution of zooplankton (with daily vertical migration in the water column) had a larger impact on the carbon transfer into the ocean interior. But results suggest that environmental factors most strongly affected the marine carbon pump efficiency. Specifically, increased ocean temperatures and greater atmospheric oxygen abundance led to a significant decrease in the efficiency of the BP. Cumulatively, these results suggest that while major biological innovations influenced the efficiency of BP, the long-term evolution of the marine carbon pump was primarily controlled by environmental drivers such as climate cooling and warming. By enhancing the rate of heterotrophic microbial degradation, our results suggest that the anthropogenically-driven global warming can result in a less efficient BP with reduced power of marine ecosystem in sequestering carbon from the atmosphere.

Authors:
Mojtaba Fakhraee (Yale University, Georgia Tech, and NASA Astrobiology Institute)
Noah J. Planavsky (Yale University, and NASA Astrobiology Institute)
Christopher T. Reinhard (Georgia Tech, and NASA Astrobiology Institute)

How zooplankton control carbon export in the Southern Ocean

Posted by mmaheigan

· Thursday, December 3rd, 2020

The Southern Ocean exhibits an inverse relationship between surface primary production and export flux out of the euphotic zone. The causes of this production-export decoupling are still under debate. A recently published mini review in Frontiers in Marine Science focused on zooplankton, an important component of Southern Ocean food webs and the biological pump. The authors compared carbon export regimes from the naturally iron-fertilised Kerguelen Plateau (high surface production, but generally low export) with the iron-limited and less productive high nutrient, low chlorophyll (HNLC) waters south of Australia, where carbon export is relatively high.

Figure 1: The role of zooplankton in establishing the characteristic export regimes at two sites in the Southern Ocean, (a) the highly productive northern Kerguelen Plateau, which exhibits low export, and (b) the iron-limited waters south of Australia with low production, but relatively high carbon export.

Size structure and zooplankton grazing pressure are found to shape carbon export at both sites. On the Kerguelen Plateau, a large size spectrum of zooplankton acts as “gate-keeper” to the mesopelagic by significantly reducing the sinking flux of phytoaggregates, which establishes the characteristic low export regime. In the HNLC waters, however, the zooplankton community is low in biomass and grazes predominantly on smaller particles, which leaves the larger particles for export and leads to relatively high export flux.

Gaps in knowledge related to insufficient seasonal data coverage, understudied carbon flux pathways, and associated mesopelagic processes limit our current understanding of carbon transfer through the water column and export. More integrated data collection efforts, including the use of autonomous profiling floats (e.g., BGC-Argo), stationary moorings, etc., will improve seasonal carbon flux data coverage, thus enabling more reliable estimation of carbon export and storage in the Southern Ocean and improved projection of future changes in carbon uptake and atmospheric carbon dioxide levels.

Authors:
Svenja Halfter (University of Tasmania)
Emma Cavan (Imperial College London)
Ruth Eriksen (CSIRO)
Kerrie Swadling (University of Tasmania)
Philip Boyd (University of Tasmania)

A new Regional Earth System Model of the Mediterranean Sea biogeochemical dynamics

Posted by mmaheigan

· Thursday, November 19th, 2020

The Mediterranean Sea is a semi-enclosed mid-latitude oligotrophic basin with a lower net primary production than the global ocean. A west-east productivity trophic gradient results from the superposition of biogeochemical and physical processes, including the biological pump and associated carbon and nutrient (nitrogen, phosphorus) fluxes, the spatial asymmetric distribution of nutrient sources (rivers, atmospheric deposition, coastal upwelling, etc.), the estuarine inverse circulation associated with the inflow of Atlantic water through the Gibraltar Strait. The complex and highly variable interface between land and sea throughout this basin add a further layer of complexity in the Mediterranean oceanic and atmospheric circulation and on the associated biogeochemistry dynamics, emphasizing the need for high-resolution truly integrated Regional Earth System Models to track and understand fine-scale processes and ecosystem dynamics.

In a recent paper published in the Journal of Advances in Modeling Earth System, the authors introduced a new version of the Regional Earth System model RegCM-ES and evaluated its performance in the Mediterranean region. RegCM-ES fully integrates the regional climate model RegCM4, the land surface scheme CLM4.5 (Community Land Model), the river routing model HD (Hydrological Discharge Model), the ocean model MITgcm (MIT General Circulation model) and the Biogeochemical Flux Model BFM.

A comparison with available observations has shown that RegCM-ES was able to capture the mean climate of the region and to reproduce horizontal and vertical patterns of chlorophyll-a and PO₄(the limiting nutrient in the basin) (Figure 1). The same comparison revealed a systematic underestimation of simulated dissolved oxygen (which will be fixed by the use of a new parametrization of oxygen solubility), and an overestimation of NO₃, possibly due to uncertainties in initial and boundary conditions (mostly traced to river and Dardanelles nutrient discharges) and an overly vigorous vertical mixing simulated by the ocean model in some parts of the Basin.

Figure.1 Distributions of chlorophyll-a mg/m³ (top) and PO₄ mmol/m³ (bottom) in the Mediterranean Sea as simulated by RegCM-ES.

Overall, this analysis has demonstrated that RegCM-ES has the capabilities required to become a powerful tool for studying regional dynamics and impacts of climate change on the Mediterranean Sea and other ocean basins around the world.

Authors:
Marco Reale (Abdus Salam International Centre for theoretical physics-ICTP, National Institute of Oceanography and Experimental Geophysics-OGS)
Filippo Giorgi (Abdus Salam International Centre for theoretical physics-ICTP)
Cosimo Solidoro (National Institute of Oceanography and Experimental Geophysics-OGS)
Valeria Di Biagio (National Institute of Oceanography and Experimental Geophysics-OGS)
Fabio Di Sante (Abdus Salam International Centre for theoretical physics-ICTP)
Laura Mariotti (National Institute of Oceanography and Experimental Geophysics-OGS)
Riccardo Farneti (Abdus Salam International Centre for theoretical physics-ICTP)
Gianmaria Sannino (Italian National Agency for New Technologies, Energy and Sustainable Economic Development-ENEA)

Timing matters: Correcting float-based measurements of diurnal oxygen variability

Posted by mmaheigan

· Friday, November 6th, 2020

Despite its fundamental importance to the global carbon cycle, climate, and marine ecosystems, oceanic primary production is grossly under-sampled. Autonomous platforms represent an important frontier for expanding measurements of marine primary productivity in time and space, but this requires the establishment of robust, standardized methods to obtain reliable data from these platforms. Using data from profiling floats deployed in the northern Gulf of Mexico, authors of a recent study published in Biogeosciences demonstrated, for the first time, that daily cycles of dissolved oxygen can be observed with Argo-type profiling floats. The floats were instructed to profile continuously, resulting in about one profile every three hours. The floats recorded data both on the ascent (upcast) and the descent (downcast). Adjacent casts showed hysteresis in gradient areas, i.e. a lag in the concentration measurement, due to the slow response time of oxygen sensors.

Figure 1: Example of raw oxygen measurements from a downcast (dark purple line) and an upcast (dark green line) and corrected profiles (lighter purple and green lines) in (a) density and (b) pressure coordinates. (c) Upcasts and downcasts (top 150 m) plotted against each other with raw data (purple) and data corrected according to the new method (red). (d) The root-mean-square difference (RMSD) between the upcast and downcast after correcting casts for a range of time constants (τ), showing an optimal τ value in this case of 76 s (red dot).

To correct for these measurement errors, the authors developed a method to determine sensor response time in situ, using an established process for correcting sensor response time errors. This method requires a timestamp associated with each observation. The response time parameter (τ) was determined by correcting consecutive profiles taken in opposite directions using a range of possible values and finding the minimum root-mean-square-difference between them (Figure 1). In light of these findings, future oxygen measurements from Argo floats should be transmitted with time stamps for a calibration period during which up- and downcasts are recorded to facilitate response time correction. The method developed here will contribute to more accurate measurement of dissolved oxygen, thus improving the quality of derived quantities such as primary productivity.

Authors
Christopher Gordon (Dalhousie University)
Katja Fennel (Dalhousie University)
Clark Richards (Fisheries and Oceans Canada)
Nick Shay (University of Miami)
Jodi Brewster (University of Miami)

Will global change “stress out” ocean DOC cycling?

Posted by mmaheigan

· Tuesday, September 29th, 2020

The dissolved organic carbon (DOC) pool is vital for the functioning of marine ecosystems. DOC fuels marine food webs and is a cornerstone of the earth’s carbon cycle. As one of the largest pools of organic matter on the planet, disruptions to marine DOC cycling driven by climate and environmental global changes can impact air-sea CO2 exchange, with the added potential for feedbacks on Earth’s climate system.

Figure 1. Simplified view of major dissolved organic carbon (DOC) sources (black text) and sinks (yellow text) in the ocean.

Since DOC cycling involves multiple processes acting concurrently over a range of time and space scales, it is especially challenging to characterize and quantify the influence of global change. In a recent review paper published in Frontiers in Marine Science, the authors synthesize impacts of global change-related stressors on DOC cycling such as ocean warming, stratification, acidification, deoxygenation, glacial and sea ice melting, inflow from rivers, ocean circulation and upwelling, and atmospheric deposition. While ocean warming and acidification are projected to stimulate DOC production and degradation, in most regions, the outcomes for other key climate stressors are less clear, with much more regional variation. This synthesis helps advance our understanding of how global change will affect the DOC pool in the future ocean, but also highlights important research gaps that need to be explored. These gaps include for example a need for studies that allow to understand the adaptation of degradation/production pathways to global change stressors, and their cumulative impacts (e.g. temperature with acidification).

Authors:
C. Lønborg (Aarhus University)
C. Carreira (CESAM, Universidade de Aveiro)
Tim Jickells (University of East Anglia)
X.A. Álvarez-Salgado (CSIC, Instituto de Investigacións Mariñas)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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