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South Pacific particulate organic carbon fate challenges Martin’s Law

Posted by mmaheigan

· Tuesday, May 14th, 2019

Joint science highlight with GEOTRACES

Carbon storage in the ocean is sensitive to the depths at which particulate organic carbon (POC) is respired back to CO₂ within the twilight zone (100-1000m). For decades, it has been an oceanographic priority to determine the depth scale of this regeneration process. To investigate this, GEOTRACES scientists are deploying new isotopic tools that provide a high-resolution snapshot of POC flux and regeneration across steep biogeochemical gradients in the South Pacific Ocean.

A recent paper in PNAS reported on particulate organic carbon (POC) fluxes throughout the water column (focusing on the upper 1000 m) along the GP16 GEOTRACES section between Peru and Tahiti (Figure 1A). POC fluxes (Figure 1B) were derived by normalizing concentrations of POC to ²³⁰Th following analysis of samples collected by in situ filtration. This work builds on a research theme initiated at the GEOTRACES-OCB synthesis workshop held at Lamont-Doherty Earth Observatory in 2016.

Figure caption: Site map and POC flux characteristics from GEOTRACES GP16 section. Plot A) shows the GP16 station locations as white circles, with nearby sediment trap deployments as black stars, with 2013 MODIS satellite-derived net primary productivity in the background. Plot B) shows POC fluxes from particulate 230Th-normalization from selected stations spanning the zonal extent of the GP16 section. Plot C) shows power law exponent b values for each GP16 station (blue), compared to estimates from bottom-moored sediment traps in the South Pacific (black and red dashed lines), a compilation of sediment traps in the North Pacific (green dashed line), and neutrally buoyant sediment traps in the subtropical North Pacific (yellow shaded band). GP16 regeneration length scales from 230Th-normalization agree most closely with the estimates from neutrally buoyant sediment traps.

The study results show that POC regeneration depth is shallower than anticipated, especially in warm stratified waters of the subtropical gyre. Regeneration depth—expressed in terms of the Martin-curve power-law exponent “b” (Figure 1C)—is shown to be greater than previous estimates (horizontal dashed lines), but similar to values obtained using neutrally buoyant sediment traps at the Hawaii Ocean Time-series Station Aloha. In contrast to the rapid regeneration of POC in warm stratified waters, POC regeneration within the ODZ is below our detection limits. Models have shown that shallower regeneration of POC leads to less efficient carbon storage in the ocean, making the authors speculate that global warming, yielding expanded and more stratified gyres, may induce a reduction of the ocean’s efficacy for carbon storage via the biological pump.

Authors:
Frank J. Pavia, Robert F. Anderson, Sebastian M. Vivancos, Martin Q. Fleisher (Columbia University)
Phoebe J. Lam (University of California Santa Cruz)
B.B. Cael (now at University of Hawai’i Manoa, formerly at MIT)
Yanbin Lu, Pu Zhang, R. Lawrence Edwards (University of Minnesota)
Hai Cheng (University of Minnesota and Xi’an Jiaotong University)

How fast are elements sinking in the ocean?

Posted by mmaheigan

· Tuesday, March 5th, 2019

The sinking of elements in the ocean influences many important processes such as deep ocean carbon storage and the availability of trace metals for phytoplankton. Previously, quantification of this sinking flux has been done using sediment trap deployments or tracer measurements of a particle-reactive radioisotope. Since sediment traps and each particular radioisotope each have caveats in how they quantify sinking flux, sinking particulate flux measurements, especially trace metal fluxes, are especially sparse, with relatively large uncertainties. For the first time ever, in the U.S. GEOTRACES North Atlantic campaign (GA03), four types of radioisotope data (thorium-234, polonium-210, thorium-228 and thorium-230) were measured, along with a periodic table’s worth of particulate elements that can be used to quantify sinking fluxes at locations with prior sediment trap studies, including the Ocean Flux Program (OFP), for comparison.

Sinking flux estimates of particulate organic carbon (POC) and particulate iron (pFe) derived using different methods, including the different radionuclides labelled and sediment traps from oceanic sites near Bermuda. These include the Bermuda-Atlantic Time-series site (BATS), the Ocean Flux Program site (OFP), and the Bermuda Rise (BaRFlux site). The GA03 and BaRFlux data represent observations from 2012 and 2013. The triangles and stars represent data from throughout the time-series observations of those sites.

In a new study published in Global Biogeochemical Cycles, a team of collaborators synthesized all of the radioisotope and particle composition measurements from the GA03 cruise, as well as results from a nearby study called BaRFlux, to constrain sinking fluxes of carbon and eight trace elements (P, Cd, Co, Cu, Mn, Al, Fe and thorium-232) throughout the North Atlantic Ocean. The five different methods for constraining flux (sediment traps plus the four radioisotope methods) agree encouragingly well given the independent uncertainties associated with each method. Additionally, since the four radioisotopes have a range in half-lives from days to thousands of years, the different methods can reconstruct particle fluxes throughout the water column, from the dynamic bloom-and-bust-like changes near the surface to the relatively slow, long-term sinking into the abyssal ocean. These fluxes will improve the understanding of the global budgets of carbon and trace elements. This study would not have been possible without the support of OCB and GEOTRACES who co-funded a synthesis workshop on biogeochemical cycling of trace elements at the Lamont-Doherty Earth Observatory in summer 2016.

Also see Eos highlight on this article

Authors:
Christopher T. Hayes (University of Southern Mississippi)
Erin E. Black (Woods Hole Oceanographic Institution, now at Dalhousie University)
Robert F. Anderson (Lamont-Doherty Earth Observatory of Columbia University)
Mark Baskaran (Wayne State University)
Ken O. Buesseler (Woods Hole Oceanographic Institution)
Matthew A. Charette (Woods Hole Oceanographic Institution)
Hai Cheng (Xi’an Jiaotong University and University of Minnesota)
Kirk Cochran (Stony Brook University)
Lawrence Edwards (University of Minnesota)
Patrick Fitzgerald (Stony Brook University)
Phoebe J. Lam (University of California Santa Cruz
Yanbin Lu (Earth Observatory of Singapore)
Stephanie O. Morris (Woods Hole Oceanographic institution)
Daniel C. Ohnemus (Bigelow Laboratory for Ocean Sciences, now at Skidaway Institute of Oceanography)
Frank J. Pavia (Lamont-Doherty Earth Observatory of Columbia University)
Gillian Stewart (Queens College, City University of New York)
Yi Tang (Queens College, City University of New York)

Shipboard LiDAR: A powerful tool for measuring the distribution and composition of particles in the ocean

Posted by mmaheigan

· Tuesday, October 23rd, 2018

Despite major advances in ocean observing capabilities, characterizing the vertical distribution of materials in the ocean with high spatial resolution remains challenging. Light Detection and Ranging (LiDAR), a technique that relies on measurement of the “time-of-flight” of a backscattered laser pulse to determine the range to a scattering object, could potentially fill this critical gap in our sampling capabilities by providing remote estimates of the vertical distribution of optical properties and suspended particles in the ocean.

A recent article in Remote Sensing of Environment details the development of a portable shipboard LiDAR and its capabilities for extending high-frequency measurements of scattering particles into the vertical dimension. The authors deployed the experimental system (shown in Figure 1a) during research cruises off the coast of Virginia and during a passenger ferry crossing of the Gulf of Maine (associated with the Gulf of Maine North Atlantic Time Series program-GNATS). Remote measurements of LiDAR signal attenuation corresponded well with simultaneous in situ measurements of water column optical properties and proxies for the concentration of suspended particles. Interestingly, the researchers also observed that the extent to which the return signal was depolarized (also known as the LiDAR depolarization ratio) may provide information regarding the composition of particles within the scattering volume. This is evidenced by the strong relationship between the depolarization ratio and the backscattering ratio, an indicator of the bulk composition (mineral vs. organic) of the particles within a scattering medium (Figure 1b).

Figure 1. a) LiDAR system deployed to look through a chock at the bow of the M/V Nova Star. b) Relationship between the LiDAR linear depolarization ratio (ρ) and coincident measurements of the particulate backscattering ratio (b_bp/b_p). The black line represents a least-squares exponential fit to the data.

As LiDAR technology becomes increasingly rugged, compact, and inexpensive, the regular deployment of oceanographic LiDAR on a variety of sampling platforms will become an increasingly practical method for characterizing the vertical and horizontal distribution of particles in the ocean. This has the potential to greatly improve our ability to investigate the role of particles in physical and biogeochemical oceanographic processes, especially when sampling constraints limit observations to the surface ocean.

Authors:
Brian L. Collister (Old Dominion University)
Richard C. Zimmerman (Old Dominion University)
Charles I. Sukenik (Old Dominion University
Victoria J. Hill (Old Dominion University)
William M. Balch (Bigelow Laboratory for Ocean Sciences)

Elusive protists transport large quantities of silica into the ocean interior

Posted by hbenway

· Friday, September 7th, 2018

Phaeodaria are single-celled eukaryotes (a.k.a. protists) belonging to the supergroup Rhizaria. Like diatoms, phaeodarians build up skeletons made of opaline silica, but unlike their emblematic relatives, phaeodarians have been largely ignored in the marine silica cycle.

The contribution of phaeodarians to total biogenic silica (bSiO2) export is markedly enhanced at low total bSiO2 export (analysis did not include data from 2014 due to abnormally depleted phaeodarian population).

In a recent study published in Global Biogeochemical Cycles (also see related Research Spotlight in AGU Eos), authors used a combination of extensive sediment trap deployments and in situ imagery during four cruises of the California Current Ecosystem Long-Term Ecological Research (CCE-LTER) Program off the coast of California to quantify biogenic silica export mediated by giant phaeodarians (>600 µm). These data revealed that giant phaeodarians possess among the highest recorded cellular silica content (up to 43 µg Si cell^-1). In addition, measurements of vertical fluxes suggest that these organisms can play a surprisingly large role in silica export (ranging from 10-80% of total silica export) in more oligotrophic waters. Also, because they are most abundant in waters below the euphotic zone, phaeodarians contribute to increased biogenic silica flux in the mesopelagic, in contrast with typically observed decreases in carbon flux with depth. Given their significant contribution to silica export, phaeodarians should be considered in global budgets and models of ocean silica cycles, especially in oligotrophic waters.

Authors
Tristan Biard (Scripps Institution of Oceanography)
Jeffrey W. Krause (University of Southern Alabama)
Michael R. Stukel (Florida State University)
Mark D. Ohman (Scripps Institution of Oceanography)

Updates and Plans for the First EXPORTS Field Campaign

Posted by mmaheigan

· Thursday, February 1st, 2018

Contacts: David Siegel (UCSB; EXPORTS Science Lead) & Ivona Cetinić (NASA GSFC/USRA; EXPORTS Project Scientist)

EXPORTS in a Nutshell

Ocean ecosystems constitute a significant fraction of the world’s primary production, fixing CO₂ and creating oxygen while playing critical roles in sequestering CO₂ from the atmosphere. An improved understanding of the cycling and fate of oceanic organic carbon will not only allow for better prediction of how these processes may change in the future, but it will help underpin the societal value of these ocean ecosystem services. The EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) field campaign aims to provide answers to these questions.

The goal of EXPORTS is to develop a predictive understanding of the export and fate of global ocean net primary production (NPP) and its implications for the Earth’s carbon cycle in present and future climates (oceanexports.org). To develop this quantitative understanding, EXPORTS will measure and model the export pathways that remove fixed organic carbon from the upper ocean and drive the attenuation of these vertical fluxes within the ocean interior. EXPORTS datasets will be used to develop and test numerical predictive and satellite-data diagnostic models of NPP fates and their carbon cycle impacts. EXPORTS builds on decades of NASA-funded research on developing and validating satellite data-driven models of regional to global NPP and hence, EXPORTS will contribute to NASA’s upcoming Plankton, Aerosol, Cloud and ocean Ecosystem (PACE) mission.

A Brief History of EXPORTS

The NASA EXPORTS field campaign is the result of an initial open competition in 2012 by the NASA Ocean Biology and Biogeochemistry (OBB) Program to identify scoping workshops for future field campaigns. This was followed by many years of committee-based planning, community vetting of science and implementation plans, and final peer review. The NASA EXPORTS Science and Implementation Plans were made publicly available by the NASA OBB program. In February 2016, the National Science Foundation held the Biology of the Biological Pump (BoBP) workshop aimed in part to leverage NASA’s planned investment in the EXPORTS field program. In August 2016, NASA announced it would support data mining and observational system simulation experiment (OSSE) projects to help with planning the NASA EXPORTS field campaign and five projects were funded under this pre-EXPORTS call.

In early 2017, NASA released a call for proposals for the EXPORTS field program and the competition for inclusion on the NASA EXPORTS Science Team and its leadership. The call also included the implementation approach for the EXPORTS field program, with two major cruises to collect in situ data, followed by a synthesis and analysis phase to be competed in the future. At the same time, NSF released a Dear Colleague Letter (DCL) stating they would consider proposals that leveraged the NASA investment with objectives that supported the BoBP plan. From the NASA competition, 11 projects were selected for support (Table 1). Three NSF proposals have been recommended for support (at the time of this writing, the awarding of these grants is not yet official), bringing the count to a total of 41 PIs and co-PIs that are supported by NASA and NSF on EXPORTS/BoBP. This level of investment likely makes EXPORTS the largest coordinated U.S.-funded biogeochemical field program since the Joint Global Ocean Flux Study (JGOFS) nearly 2 decades ago. Table 1 lists the funded projects, PI, and co-PIs, project titles, and links to two page descriptions for each project.

Any implementation of the EXPORTS field program must result in the quantification of the major export pathways that remove fixed organic carbon from the upper ocean and sequester it at depth. NASA is uniquely poised, given the global vantage point of space-based observations, to use Earth observing satellite data to meet this objective, while also understanding observational requirements for future advanced Earth Observing missions. Quantification of major carbon export pathways requires the simultaneous measurement of 1) sinking particle fluxes (and their composition), 2) the export of organic carbon to depth via vertically migrating zooplankton, and 3) the vertical transport of dissolved and suspended particulate organic carbon to depth, where it is remineralized by different microbial communities. To develop predictive links to satellite ocean color-retrievable parameters, the quantification of export pathways must be augmented by research programs focused on, but not limited to, the elucidation of plankton community structure, rates of NPP and grazing, and optical oceanography. Complicating this further is the stochastic nature of export flux determinations that necessitates a fully four-dimensional sampling design while maintaining a long-term perspective. This reasoning led to the Agency selection of projects listed in Table 1.

The planning of the EXPORTS field campaign is well underway. The first field deployment is planned to take place in the summer of 2018 in the Northeast Pacific, while the tentative second cruise will be in the North Atlantic Ocean in the spring of 2020. NASA has formed a project office staffed of Agency and EXPORTS PIs to direct EXPORTS’ progress. The EXPORTS Science Team, which comprises the funded PIs, is participating on near-weekly teleconferences, and co-chief scientists have been selected. An initial EXPORTS kickoff meeting was held in September 2017 in the Washington, DC area. There, the PIs organized themselves into working groups focused on creating short methodological descriptions for each measurement to be made. This documentation will be critical for the metadata, the project data management, and for ensuring legacy of the program through a set of NASA Technical Memoranda. This has also proven to be an excellent way to foster cross-project collaborations. A second PI meeting is scheduled for mid-February 2018, leveraging the upcoming Ocean Sciences Meeting.

EXPORTS First Field Deployment

The first EXPORTS field deployment will be to the Northeast Pacific Ocean in late summer 2018. Two ships, the R/V Roger Revelle and the R/V Sally Ride, will be deployed for 27 days of coordinated sampling around Station P (50°N 145°W), while EXPORTS’ autonomous component will ensure a longer-term presence. The choice of Station P as an anchor point for the field campaign was made based on results from the data mining and OSSE projects and the availability of a long-term data set for this site, as well as the many sampling partnerships afforded by ongoing programs. Canada’s Line P long-term hydrographic/biogeochemistry program has been running since 1949, and they currently conduct three annual transect cruises from British Columbia to Station P. Other useful partnerships include NOAA Pacific Marine Environmental Laboratory’s (PMEL) air-sea interaction buoy and the NSF’s Ocean Observatories Initiative’s (OOI) global node at Station P.

Figure 1: Cartoon depicting many of the individual elements to be deployed during the 2018 EXPORTS sampling program in the North Pacific.

The EXPORTS 2018 field deployment will comprise four basic components (depicted in Figure 1 above). First, several autonomous vehicles will be deployed before the ship observations. An instrumented Lagrangian float will be deployed at depth and used to set the spatial center of the sampling program, while an instrumented Seaglider will be used to provide vertical and some horizontal spatial information around the Lagrangian float’s drift. In addition, and if approved by the OOI Facility Board, instrumented gliders deployed at the Station P OOI global node will be used to supplement the autonomous vehicle data streams.

Second, the R/V Roger Revelle will be the Process Ship, and will follow the Lagrangian float. The Process Ship will focus on rates (NPP, sinking particle fluxes, grazing, net community production, zooplankton respiration and fecal particle production, aggregate formation, etc.) and vertical information (microbial community structure and particle size spectra) in the water mass surrounding the float. Rate measurements will be made using water sampled with a trace metal-clean rosette system, and sinking particle fluxes from neutrally buoyant sediment traps (NBSTs) and sediment trap array. In particular, microbial community structure will be measured using a variety of techniques, including high-throughput microscopic imaging systems, meta-community genomic sequencing, isolation and experimentation on individual marine snow aggregates, and gel trap-collected sinking particles. The Process Ship will also conduct a complete optical oceanographic sampling program ensuring links to remotely sensed parameters. Drs. Deborah Steinberg (VIMS) and Jason Graff (OSU) have volunteered to be co-chief scientists for the R/V Revelle.

Third, the R/V Sally Ride will be the Survey Ship making spatial patterns about the Process Ship on scales from roughly 1 km to nearly 100 km. The focus of the Survey Ship will be collecting horizontal spatial information on particle export (²³⁴Th disequilibrium), net community production (O₂/Ar), organic carbon stocks, phytoplankton composition, and inherent and apparent optical properties. The Survey Ship will also deploy a suite of instrumentation to characterize the particle size spectrum from 20 nm to nearly a cm. It will also be responsible for validating the calibration of the autonomous vehicles’ bio-optical instrumentation and the development of the biogeochemical proxies. Norm Nelson (UCSB) and Mary Jane Perry (self-affiliated) have agreed to be the co-chief scientists on the R/V Sally Ride.

Last, EXPORTS needs a long-term sampling presence to tie the ship-based observations to climatically relevant time and space scales. The Lagrangian float and Seaglider will sample for ~6 months, bracketing EXPORTS’ intensive ship observations, and thus providing some long-term perspectives to the ship sampling. Partnering programs like Line P and the OOI Global Node will allow for some additional in situ sampling opportunities and broader temporal context. Further, the PMEL mooring and a profiling float project recommended for funding by NSF will extend the long-term biogeochemical observations.

The integration of the observations will generate a data set that will not only be invaluable for building new algorithms for retrievals of new and refined data products from NASA’s current fleet of Earth Observing Satellites, but also will be critical in the development of new sets of requirements for future satellite observations of our Earth system. As described in the EXPORTS Implementation Plan, the likelihood of the EXPORTS achieving its predictive goals will increase as the number and variety of observations available to develop and test novel algorithms increases. Hence, the EXPORTS program is particularly motivated to collaborate with international partners who would be interested to share their data sets to address these important issues.

An Amazing Opportunity for Ocean Science

EXPORTS is the first large-scale, coordinated opportunity aimed at understanding the ocean’s biological pump since the JGOFS program. Hence, the EXPORTS team is planning to create a long-term legacy for these one-of-a-kind datasets. NASA is supporting a full-time data manager to make sure that all of the information collected is easily accessible to all; as per NASA policies, all data will be freely available. Efforts are being made to ensure the intercalibration and interoperability of measurements made across different platforms, thus ensuring continuity of the datasets. EXPORTS also plans to over-collect whole water, filtered particulate, and trap-collected samples that can be used for many purposes, both now by collaborators, and in the future as analytical methodologies become more powerful.

The timing for EXPORTS could not be better. Our understanding of the biological pump and in particular, the fate of ocean NPP has rapidly advanced over the past decade. We now know that the biological pump is four-dimensional, which complicates our observational approaches, and that food web and aggregate dynamics, microbial community composition and function, individual organism physiology and behavior, and submesoscale turbulent transport are all components that need to be quantified. Further, our observing tools and capabilities have witnessed giant leaps over just the past couple of years. Novel imaging instruments can now measure particle and aggregate size distributions and identify and quantify plankton abundances. Genomic approaches enable the characterization of plankton communities and their physiology. Novel hyperspectral optical measurements of ocean reflectance as well as component inherent optical properties provide strong links to present and future satellite ocean color missions. High-resolution numerical models now enable the elucidation of submesoscale (100s m to ~10 km) processes that include food webs and biogeochemistry, while autonomous vehicles provide persistent and spatially distributed observations that complement the shipboard sampling. It seems the time for EXPORTS is now.

Click for PDF of article and table

Table 1: EXPORTS Science Team

Lead PI	Co-PIs	Project Title
Michael Behrenfeld (OSU) – NASA	Emmanuel Boss (UMaine), Jason Graff (OSU), Lionel Guidi (LOV), Kim Halsey (OSU), & Lee Karp-Boss (UMaine)	First Step – Linking Remotely-Detectable Optical Signals, Photic Layer Plankton Properties, and Export Flux
Ken Buesseler (WHOI) – NASA	Claudia Benitez-Nelson (USC) & Laure Resplandy (Princeton)	Elucidating Spatial and Temporal Variability in the Export and Attenuation of Ocean Primary Production using Thorium-234
Craig Carlson (UCSB) – NASA	Dennis Hansell (RSMAS)	Evaluating the Controls of Dissolved Organic Matter Accumulation, its Availability to Bacterioplankton, its Subsequent Diagenetic Alteration and Contribution to Export Flux
Meg Estapa (Skidmore) -NASA	Ken Buesseler (WHOI), Colleen Durkin (MLML) & Melissa Omand (URI)	Linking Sinking Particle Chemistry and Biology with Changes in the Magnitude and Efficiency of Carbon Export into the Deep Ocean
Craig Lee (UW) – NASA	Eric D’Asaro (UW), David Nicholson (WHOI), Melissa Omand (URI), Mary Jane Perry (self-affiliated) & Andrew Thompson (CalTech)	Autonomous Investigation of Export Pathways from Hours to Seasons
Adrian Marchetti (UNC) – NASA	Nicolas Cassar (Duke) & Scott Gifford (UNC)	Quantifying the Carbon Export Potential of the Marine Microbial Community: Coupling of Biogenic Rates and Fluxes with Genomics at the Ocean Surface
Susanne Menden-Deuer (URI) – NASA	Tatiana Rynearson (URI)	Quantifying Plankton Predation Rates, and Effects on Primary Production, Phytoplankton Community Composition, Size Spectra and Potential for Export
Collin Roesler (Bowdoin) – NASA	Heidi Sosik (WHOI)	Phytoplankton community structure, carbon stock, carbon export and carbon flux: What role do diatoms play in the North Pacific and North Atlantic Oceans?
David Siegel (UCSB) – NASA	Adrian Burd (UGA), Andrew McDonnell (UAF), Norm Nelson (UCSB) & Uta Passow (UCSB)	Synthesizing Optically and Carbon Export-Relevant Particle Size Distributions for the EXPORTS Field Campaign
Deborah Steinberg (VIMS) – NASA	Amy Maas (BIOS)	Zooplankton-Mediated Export Pathways: Quantifying Fecal Pellet Export and Active Transport by Diel and Ontogenetic Vertical Migration in the North Pacific and Atlantic Oceans
Xiaodong Zhang (UND) – NASA	Deric Gray (NRL), Lionel Guidi (LOV) & Yannick Huot (Sherbrooke)	Optically Resolving Size and Composition Distributions of Particles in the Dissolved-Particulate Continuum from 20 nm to 20 mm to Improve the Estimate of Carbon Flux
Bethany Jenkins (URI) – NSF^*	Mark Brzezinski (UCSB) & Kristen Buck (USF)	Collaborative Research: Diatoms, Food Webs and Carbon Export – Leveraging NASA EXPORTS to Test the Role of Diatom Physiology in the Biological Carbon Pump
Ben Van Mooy (WHOI) -NSF^*		Environmental Lipidomics of Suspended and Sinking Particles in the Upper Ocean
Andrea Fassbender (MBARI) – NSF^*		Constraining Upper-Ocean Carbon Export with Biogeochemical Profiling Floats

^*Project recommended for funding by NSF, but not officially funded as of this publication.

Lasers shed light on giant larvacean filtration impact on the ocean’s biological pump

Posted by mmaheigan

· Thursday, January 4th, 2018

To accurately assess the impacts of climate change, we need to understand how atmospheric carbon is transported from surface waters to the deep sea. Grazers and filter feeders drive the ocean’s biological pump as they remove and sequester carbon at various rates. This pump extends down into the midwater realm, the largest habitat on earth. Giant larvaceans are fascinating and enigmatic occupants of the upper 400 m of the water column, where they build complex filtering structures out of mucus that can reach diameters greater than 1 m in longest dimension (Figure 1A). Because of the fragility of these structures, direct measurements of filtration rates require us to study them in situ. We developed DeepPIV, an ROV-deployable instrument (Figure 1B) to directly measure fluid motion and filtration rates in situ (Figure 1C).

Figure 1. (A) Traditional view of a giant larvacean illuminated by white ROV lights. (B) DeepPIV instrument is seen attached to Monterey Bay Aquarium Research Institute’s (MBARI) MiniROV. (C) DeepPIV-illuminated interior view of a giant larvacean house, where particle motion in ambient seawater serves as a proxy for fluid motion. White arrows in (A) and (C) indicate larvacean head/trunk; white arrow in (B) indicates DeepPIV.

The filtration rates we measured for giant larvaceans are far greater than for any other zooplankton filter feeder. When combined with abundance data from a 22-year time series, the grazing impact of giant larvaceans indicates that within 13 days, they can filter the total volume of water within their habitable depth range (~100-300 m; based on maximum abundance and measured filtration rates). Our results reveal that the contribution of giant larvaceans to vertical carbon flux is much greater than previously thought. Small larvaceans, which are present in the water column in even larger quantities than giant larvaceans, may also have a measurable impact on carbon fluxes. New technologies such as DeepPIV are yielding more quantitative observations of midwater filter feeders, which is improving our understanding of the roles that deep-water biota play in the long-term removal of carbon from the atmosphere.

Read the full journal article: http://advances.sciencemag.org/content/3/5/e1602374.full

Authors: (All at MBARI)
Kakani Katija
Rob E. Sherlock
Alana D. Sherman
Bruce H. Robison

Zooplankton play a key and diverse role in the ocean carbon cycle

Posted by mmaheigan

· Thursday, December 7th, 2017

How does the enormous diversity of zooplankton species, life cycles, size, feeding ecology, and physiology affect their role in ocean food webs and cycling of carbon?

In the 2017 issue of Annual Review of Marine Science, Steinberg and Landry review the fundamental and multifaceted roles that zooplankton play in the cycling and export of carbon in the ocean. Carbon flows through marine pelagic ecosystems are complex due to the diversity of zooplankton consumers and the many trophic levels they occupy in the food web–from single-celled herbivores to large carnivorous jellyfish. Zooplankton also contribute to carbon export processes through a variety of mechanisms (mucous feeding webs, fecal pellets, molts, carcasses, and vertical migrations).

Figure 1. Pathways of cycling and export of carbon by zooplankton in the ocean.

Climate change and other stressors are already affecting zooplankton abundance, distribution, and life cycles, and are predicted to result in widespread changes in zooplankton carbon cycling in the future. These changes will affect both the larger marine food web that depends upon zooplankton for food (fish) or recycled products for growth (primary producers) and the amount of carbon exported into the deep sea–where far from contact with the atmosphere it no longer contributes to global warming.

Authors:

Deborah K. Steinberg, Virginia Institute of Marine Science, The College of William and Mary
Michael R. Landry, Scripps Institution of Oceanography

WBC Series: Fine-scale biophysical controls on nutrient supply, phytoplankton community structure, and carbon export in western boundary current regions

Posted by mmaheigan

· Friday, November 10th, 2017

Sophie Clayton¹, Peter Gaube¹, Takeyoshi Nagai², Melissa M. Omand³, Makio Honda⁴

1. University of Washington
2. Tokyo University of Marine Science and Technology, Japan
3. University of Rhode Island
4. Japan Agency for Marine-Earth Science and Technology, Japan

Western boundary current (WBC) regions are largely thought to be hotspots of productivity, biodiversity, and carbon export. The distinct biogeographical characteristics of the biomes bordering WBC fronts change abruptly from stable, subtropical waters to highly seasonal subpolar gyres. The large-scale convergence of these distinct water masses brings different ecosystems into close proximity allowing for cross-frontal exchange. Although the strong horizontal density gradient maintains environmental gradients, instabilities lead to the formation of meanders, filaments, and rings that mediate the exchange of physical, chemical, and ecological properties across the front. WBC systems also act as large-scale conduits, transporting tracers over thousands of kilometers. The combination of these local perturbations and the short advective timescale for water parcels passing through the system is likely the driver of the enhanced local productivity, biodiversity, and carbon export observed in these regions. Our understanding of biophysical interactions in the WBCs, however, is limited by the paucity of in situ observations, which concurrently resolve chemical, biological, and physical properties at fine spatial and temporal scales (1-10 km, days). Here, we review the current state of knowledge of fine-scale biophysical interactions in WBC systems, focusing on their impacts on nutrient supply, phytoplankton community structure, and carbon export. We identify knowledge gaps and discuss how advances in observational platforms, sensors, and models will help to improve our understanding of physical-biological-ecological interactions across scales in WBCs.

Mechanisms of nutrient supply

Nutrient supply to the euphotic zone occurs over a range of scales in WBC systems. The Gulf Stream and the Kuroshio have been shown to act as large-scale subsurface nutrient streams, supporting large lateral transports of nutrients within the upper thermocline (Pelegrí and Csanady 1991; Pelegrí et al. 1996; Guo et al. 2012; Guo et al. 2013). The WBCs are effective in transporting nutrients in part because of their strong volume transports, but also because they support anomalously high subsurface nutrient concentrations compared to adjacent waters along the same isopycnals (Pelegrí and Csanady 1991; Nagai and Clayton 2017; Komatsu and Hiroe pers. comm.). It is likely that the Gulf Stream and Kuroshio nutrient streams originate near the southern boundary of the subtropical gyres (Nagai et al. 2015a). Recent studies have suggested that nutrients in the Gulf Stream originate even farther south in the Southern Ocean (Williams et al. 2006; Sarmiento et al. 2004). These subsurface nutrients can then be supplied to the surface through a range of vertical supply mechanisms, fueling productivity in the WBC regions.

We currently lack a mechanistic understanding of how elevated nutrient levels in these “nutrient streams” are maintained, since mesoscale stirring should act to homogenize them. While it is well understood that the deepening of the mixed layer toward subpolar regions (along nutrient stream pathways) can drive a large-scale induction of nutrients to the surface layer (Williams et al., 2006), the detailed mechanisms driving the vertical supply of these nutrients to the surface layer at synoptic time and space scales remain unclear. Recent studies focusing on the oceanic (sub)mesoscale (spatial scales of 1-100 km) are starting to reveal mechanisms driving intermittent vertical exchange of nutrients and organisms in and out of the euphotic zone.

Recent surveys that resolved micro-scale mixing processes in the Kuroshio Extension and the Gulf Stream have reported elevated turbulence in the thermocline, likely a result of near-inertial internal waves (Nagai et al. 2009, 2012, 2015b; Kaneko et al. 2012, Inoue et al. 2010). In the Tokara Strait, upstream of the Kuroshio Extension, where the geostrophic flow passes shallow topography, pronounced turbulent mixing oriented along coherent banded layers below the thermocline was observed and linked to high-vertical wavenumber near-inertial internal waves (Nagai et al. 2017; Tsutsumi et al. 2017). Within the Kuroshio Extension, measurements made by autonomous microstructure floats have revealed vigorous microscale temperature dissipation within and below the Kuroshio thermocline over at least 300 km following the main stream, which was attributed to active double-diffusive convection (Nagai et al. 2015c). Within the surface mixed layer, recent studies have shown that downfront winds over the Kuroshio Extension generate strong turbulent mixing (D’Asaro et al. 2011; Nagai et al. 2012). The influence of fine-scale vertical mixing on nutrient supply was observed during a high-spatial resolution biogeochemical survey across the Kuroshio Extension front, revealing fine-scale “tongues” of elevated nitrate arranged along isopycnals (Figure 1, Clayton et al. 2014). Subsequent modeling work has shown that these nutrient tongues are ubiquitous features along the southern flank of the Kuroshio Extension front, formed by submesoscale surface mixed layer fronts (Nagai and Clayton 2017).

Microscale turbulence, double-diffusive convection, and submesoscale stirring are all processes associated with meso- and submesoscale fronts. The results from the studies mentioned above support the hypothesis that WBCs are an efficient conduit for transporting nutrients, not only over large scales but also more locally on fine scales, as isopycnal transporters, lateral stirrers, and diapycnal suppliers. It is the sum of these transport processes that ultimately fuels the elevated primary production observed in these regions.

Figure 1. Vertical sections of nitrate (μM) observed across the Kuroshio Extension in October 2009. The panels are organized such that they line up with respect to the density structure of the Kuroshio Extension Front. Cyan contour lines show the mixed layer depth (taken from Nagai and Clayton 2017).

Phytoplankton biomass, community structure, and dynamics

WBCs separate regions with markedly different biogeochemical and ecological characteristics. Subpolar gyres are productive, highly seasonal, tend to support ecosystems with higher phytoplankton biomass, and can be dominated by large phytoplankton and zooplankton taxa. Conversely, subtropical gyres are mostly oligotrophic, support lower photoautotrophic biomass, and are not characterized by a strong seasonal cycle. In turn, these subtropical regions tend to support ecosystems that comprise smaller cells and a tightly coupled microbial loop. As boundaries to these diverse regions, WBCs are the main conduit linking the equatorial and polar oceans and their resident plankton communities. Within the frontal zones, mesoscale dynamics act to stir water masses together and can transport ecosystems across the WBC into regions of markedly different physical and biological characteristics. Furthermore, mesoscale eddies can modulate vertical fluxes via the displacement of ispycnals during eddy intensification or eddy-induced Ekman pumping, or generating submesoscale patches of vertical exchange. At these smaller scales, vigorous vertical circulations ¾ with magnitudes reaching 100 m/day ¾ can fertilize the euphotic zone or transport phytoplankton out of the surface layer.

Numerous studies have hypothesized that the combination of large-scale transport, mesoscale stirring and transport, and submesoscale nutrient input leads to both high biodiversity and high population densities. Using remote sensing data, D’Ovidio et al. (2010) showed that mesoscale stirring in the Brazil-Malvinas Confluence Zone brings together communities from very different source regions, driving locally enhanced biodiversity. In a numerical model, in which physical and biological processes can be explicitly separated and quantified, Clayton et al. (2013) showed that high modeled biodiversity in the WBCs was due to a combination of transport and local nutrient enhancements. And finally, in situ taxonomic surveys crossing the Brazil-Malvinas Confluence (Cermeno et al. 2008) and the Kuroshio Extension (Honjo and Okada 1974; Clayton et al, 2017) showed both enhanced biomass and biodiversity associated with the WBC fronts. Beyond these local enhancements, WBCs might play a larger role in setting regional biogeography. Sugie and Suzuki (2017) found a mixture of temperate and subpolar diatom species in the Kuroshio Extension, suggesting that the boundary current might play a key role in setting downstream diatom diversity.

However tantalizing these results are, they remain relatively inconclusive, in part because of their relatively small temporal and spatial scales. Extending existing approaches for assessing phytoplankton community structure, leveraging emerging ‘omics and continuous sampling techniques, larger regions might be surveyed at high taxonomic and spatial resolution. Combining genomic and transcriptomic observations would provide measures of both organism abundance and activity (Hunt et al. 2013), as well as the potential to better define the relative roles of growth and loss processes. With genetically resolved data and appropriate survey strategies, it will be possible to conclusively determine the presence of these biodiversity hotspots. A better characterization and deeper understanding of these regions will provide insight into the long-term and large-scale biodiversity, stability, and function of the global planktonic ecosystem.

Organic carbon export via physical and biological processes

Export, the removal of fixed carbon from the surface ocean, is driven by gravitational particle sinking, active transport, and (sub)mesoscale processes such as eddy-driven subduction. While evidence suggests that WBCs are likely hot spots of biological (Siegel et al. 2014; Honda et al. 2017a) and physical (Omand et al. 2015) export fluxes out of the euphotic zone, only a small handful of studies have explored this. Recent results from sediment trap studies at the Kuroshio Extension Observatory (KEO) mooring, located just south of the Kuroshio Extension, suggest that there is a link between the passage of mesoscale eddies and carbon export (Honda et al. 2017b). They observed that high export events at 5000 m lagged behind the passage of negative (cyclonic) sea surface height anomalies (SSHA) at the mooring by one to two months (Figure 2). In other regions, underway measurements (Stanley et al. 2010) and optical sensors on autonomous platforms (Briggs et al. 2011; Estapa et al. 2013; Estapa et al. 2015; Bishop et al. 2016) have revealed large episodicity in export proxies over timescales of hours to days and spatial scales of 1-10 km.

Figure 2. Time series of ocean temperature in the upper ~550 m (less than 550 dbar) at station KEO between July 2014 and June 2016. The daily data shown in the figure are available on the KEO database. White contour lines show the temporal variability in the daily satellite-based sea surface height anomaly (SSHA). White open bars show the total mass flux (TMF) observed by the time series sediment trap at 5000 m (based on a figure in Honda et al. 2017b).

Another avenue of carbon export from the surface ocean results from grazing and vertical migration. Vertically migrating zooplankton feed near the surface in the dark and evade predation at depth during the day. Fronts generated by WBCs produce gradients in zooplankton communities, both in terms of grazer biomass and species compositions (e.g., Wiebe and Flierl, 1983), and influence the extent and magnitude of diel vertical migrations. Submesoscale variability in zooplankton abundance can be observed readily in echograms collected by active acoustic sensors, but submesoscale variability in zooplankton community structure and dynamics remains difficult to measure. Thus, the nature of this variability remains largely unknown.

Future research directions

Building a better understanding of how physical and biogeochemical dynamics in WBC regions interact relies on observing these systems at the appropriate scales. This is particularly challenging because of the range of scales at play in these systems and the limitation of existing in situ and remote observing platforms and techniques. As has been outlined above, the ecological and biogeochemical environment of WBCs is the result of long range transport from the flanking subtropical and subpolar gyres, as well as local modification by meso- and submesocale physical dynamics in these frontal systems.

Another challenge in disentangling the relationships between physical and biogeochemical processes in WBCs is the difficulty in measuring rates rather than standing stocks. In such dynamic systems, lags in biological responses mean that the changes in standing stocks may not be collocated with the physical process forcing them. Small-scale lateral stirring spatially and temporally decouples net community production and export while secondary circulations contribute to vertical transport. As much as possible, future process studies should include approaches that can explicitly quantify biological rates and physical transport pathways. New platforms are beginning to fill these observational gaps: BGC-Argo floats, autonomous platforms (e.g., Saildrone), high-frequency underway measurements, and continuous cytometers (including imaging cytometers) are all capable of generating high-spatial resolution datasets of biological and chemical properties over large regions. Gliders and profiling platforms (e.g., WireWalker) are making it possible to measure vertical profiles of biogeochemical properties at high frequency. Operating within a Lagrangian framework, while resolving lateral gradients of physical and biogeochemical tracers with ships or autonomous vehicles, may someday allow us to quantitatively partition the observed small-scale variability in biogeochemical tracers between that attributable to biological or physical processes.

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The Ross Sea deep microbial community’s role in sequestering CO2

Posted by mmaheigan

· Thursday, November 9th, 2017

Antarctic shelf systems generate the densest waters in the world. These shelf waters are the building blocks of Antarctic Bottom Water, the ocean’s abyssal water mass. These bottom waters have the potential to sequester carbon out of the atmosphere for millennia. One such form of marine carbon is dissolved organic carbon (DOC). DOC is produced in the surface ocean via primary production and is the global ocean’s largest standing stock of reduced carbon.

In a recent study, Bercovici et al (2017) used hydrographic and biogeochemical measurements to assess the mechanism that brings DOC into the shelf waters of the Ross Sea, the shelf system in the Pacific sector of Antarctica. These mechanisms include sinking particles, brine rejection caused by katabatic winds in the Terra Nova Bay polynya, and vertical mixing. This study revealed that DOC is primarily introduced into the deeper shelf waters via convective overturning and deep vertical mixing upon the onset of austral winter. Substantial DOC enrichment of shelf waters suggests that this carbon is exported off the shelf into Antarctic Bottom Water. However, this study finds much of the excess Ross Sea shelf DOC is actually consumed and remineralized to CO₂ by deep microbial communities at the slope of the Ross Sea shelf, ultimately sequestering this carbon into the ocean’s interior.

Physical and biological processes have the potential to introduce carbon into the dense shelf waters (blue) in the Ross Sea. Incoming waters (yellow) are modified from the Southern Ocean’s circumpolar waters. At the onset of winter, cooler temperatures and katabatic winds cause brine rejection. The rejection of brine, sinking particles and vertical mixing are all potential mechanisms for bringing DOC to the dense shelf waters. At the shelf slope, outflowing shelf waters ultimately contribute to Antarctic Bottom Water formation. This research furthers our understanding of global carbon cycling through demonstrating that Antarctic shelf systems have the potential to sequester organic carbon into the abyssal ocean.

Authors:
Sarah K. Bercovici (Rosenstiel School of Marine and Atmospheric Science, University of Miami)
Bruce A. Huber (Lamont Doherty Earth Observatory, Columbia University)
Hans B. Dejong (Stanford University)
Robert B. Dunbar (Stanford University)
Dennis A. Hansell (Rosenstiel School of Marine and Atmospheric Science, University of Miami)

Tiny marine animals strongly influence the carbon cycle

Posted by mmaheigan

· Thursday, August 31st, 2017

What controls the amount of organic carbon entering the deep ocean? In the sunlit layer of the ocean, phytoplankton transform inorganic carbon to organic carbon via a process called photosynthesis. As these particulate forms of organic carbon stick together, they become dense enough to sink out of the sunlit layer, transferring large quantities of organic carbon to the deep ocean and out of contact with the atmosphere.

However, all is not still in the dark ocean. Microbial organisms such as bacteria, and zooplankton consume the sinking, carbon-rich particles and convert the organic carbon back to its original inorganic form. Depending on how deep this occurs, the carbon can be physically mixed back up into the surface layers for exchange with the atmosphere or repeat consumption by phytoplankton. In a recent study published in Biogeosciences, researchers used field data and an ecosystem model in three very different oceanic regions to show that zooplankton are extremely important in determining how much carbon reaches the deep ocean.

Figure 1. Particle export and transfer efficiency to the deep ocean in the Southern Ocean (SO, blue circles), North Atlantic Porcupine Abyssal Plain site (PAP, red squares) and the Equatorial Tropical North Pacific (ETNP, orange triangles) oxygen minimum zone. a) particle export efficiency of fast sinking particles (Fast PEeff) against primary production on a Log10 scale. b) transfer efficiency of particles to the deep ocean expressed as Martin’s b (high b = low efficiency). Error bars in b) are standard error of the mean for observed particles, error too small in model to be seen on this plot.

In the Southern Ocean (SO), zooplankton graze on phytoplankton and produce rapidly sinking fecal pellets, resulting in an inverse relationship between particle export and primary production (Fig. 1a). In the North Atlantic (NA), the efficiency with which particles are transferred to the deep ocean is comparable to that of the Southern Ocean, suggesting similar processes apply; but in both regions, there is a large discrepancy between the field data and the ecosystem model (Fig. 1b), which poorly represents particle processing by zooplankton. Conversely, much better data-model matches are observed in the equatorial Pacific, where lower oxygen concentrations mean fewer zooplankton; this reduces the potential for zooplankton-particle interactions that reduce particle size and density, resulting in a lower transfer efficiency.

This result suggests that mismatches between the data and model in the SO and NA may be due to the lack of zooplankton-particle parameterizations in the model, highlighting the potential importance of zooplankton in regulating carbon export and storage in the deep ocean. Zooplankton parameterizations in ecosystem models must be enhanced by including zooplankton fragmentation of particles as well as consumption. Large field programs such as EXPORTS could help constrain these parameterisation by collecting data on zooplankton-particle interaction rates. This will improve our model estimates of carbon export and our ability to predict future changes in the biological carbon pump. This is especially important in the face of climate-driven changes in zooplankton populations (e.g. oxygen minimum zone (OMZ) expansion) and associated implications for ocean carbon storage and atmospheric carbon dioxide levels.

Authors:
Emma L. Cavan (University of Tasmania)
Stephanie A. Henson (National Oceanography Centre, Southampton)
Anna Belcher (University of Southampton)
Richard Sanders (National Oceanography Centre, Southampton)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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