Archive for oligotrophic

Tiny phytoplankton seen from space

Posted by mmaheigan 
· Thursday, November 19th, 2020 

Picophytoplankton, the smallest phytoplankton on Earth, are dominant in over half of the global surface ocean, growing in low-nutrient “ocean deserts” where diatoms and other large phytoplankton have difficult to thrive. Despite their small size, picophytoplankton collectively account for well over 50% of primary production in oligotrophic waters, thus playing a major role in sustaining marine food webs.

In a recent paper published in Optics Express, the authors use satellite-detected ocean color (namely remote-sensing reflectance, Rrs(λ)) and sea surface temperature to estimate the abundance of the three picophytoplankton groups—the cyanobacteria Prochlorococcus and Synechococcus, and autotrophic picoeukaryotes. The authors analysed Rrs(λ) spectra using principal component analysis, and principal component scores and SST were used in the predictive models. Then, they trained and independently evaluated the models with in-situ data from the Atlantic Ocean (Atlantic Meridional Transect cruises). This approach allows for the satellite detection of the succession of species across ocean oligotrophic ecosystem boundaries, where these cells are most abundant (Figure 1).

Figure 1. Cell abundances of the three major picophytoplankton groups (the cyanobacteria Prochlorococcus and Synechococcus, and a collective group of autotrophic picoeukaryotes) in surface waters of the Atlantic Ocean. Abundances are shown for the dominant group in terms of total biovolume (converted from cell abundance).

Since these organisms can be used as proxies for marine ecosystem boundaries, this method can be used in studies of climate and ecosystem change, as it allows a synoptic observation of changes in picophytoplankton distributions over time and space. For exploring spectral features in hyperspectral Rrs(λ) data, the implementation of this model using data from future hyperspectral satellite instruments such as NASA PACE’s Ocean Color Instrument (OCI) will extend our knowledge about the distribution of these ecologically relevant phytoplankton taxa. These observations are crucial for broad comprehension of the effects of climate change in the expansion or shifts in ocean ecosystems.

 

Authors:
Priscila K. Lange (NASA Goddard Space Flight Center / Universities Space Research Association / Blue Marble Space Institute of Science)
Jeremy Werdell (NASA Goddard Space Flight Center)
Zachary K. Erickson (NASA Goddard Space Flight Center)
Giorgio Dall’Olmo (Plymouth Marine Laboratory)
Robert J. W. Brewin (University of Exeter)
Mikhail V. Zubkov (Scottish Association for Marine Science)
Glen A. Tarran (Plymouth Marine Laboratory)
Heather A. Bouman (University of Oxford)
Wayne H. Slade (Sequoia Scientific, Inc)
Susanne E. Craig (NASA Goddard Space Flight Center / Universities Space Research Association)
Nicole J. Poulton (Bigelow Laboratory for Ocean Sciences)
Astrid Bracher (Alfred-Wegener-Institute Helmholtz Center for Polar and Marine Research / University of Bremen)
Michael W. Lomas (Bigelow Laboratory for Ocean Sciences)
Ivona Cetinić (NASA Goddard Space Flight Center / Universities Space Research Association)

 

A new Regional Earth System Model of the Mediterranean Sea biogeochemical dynamics

Posted by mmaheigan 
· Thursday, November 19th, 2020 

The Mediterranean Sea is a semi-enclosed mid-latitude oligotrophic basin with a lower net primary production than the global ocean. A west-east productivity trophic gradient results from the superposition of biogeochemical and physical processes, including the biological pump and associated carbon and nutrient (nitrogen, phosphorus) fluxes, the spatial asymmetric distribution of nutrient sources (rivers, atmospheric deposition, coastal upwelling, etc.), the estuarine inverse circulation associated with the inflow of Atlantic water through the Gibraltar Strait. The complex and highly variable interface between land and sea throughout this basin add a further layer of complexity in the Mediterranean oceanic and atmospheric circulation and on the associated biogeochemistry dynamics, emphasizing the need for high-resolution truly integrated Regional Earth System Models to track and understand fine-scale processes and ecosystem dynamics.

In a recent paper published in the Journal of Advances in Modeling Earth System, the authors introduced a new version of the Regional Earth System model RegCM-ES and evaluated its performance in the Mediterranean region. RegCM-ES fully integrates the regional climate model RegCM4, the land surface scheme CLM4.5 (Community Land Model), the river routing model HD (Hydrological Discharge Model), the ocean model MITgcm (MIT General Circulation model) and the Biogeochemical Flux Model BFM.

A comparison with available observations has shown that RegCM-ES was able to capture the mean climate of the region and to reproduce horizontal and vertical patterns of chlorophyll-a and PO4 (the limiting nutrient in the basin) (Figure 1). The same comparison revealed a systematic underestimation of simulated dissolved oxygen (which will be fixed by the use of a new parametrization of oxygen solubility), and an overestimation of NO3, possibly due to uncertainties in initial and boundary conditions (mostly traced to river and Dardanelles nutrient discharges) and an overly vigorous vertical mixing simulated by the ocean model in some parts of the Basin.

Figure.1 Distributions of chlorophyll-a mg/m3 (top) and PO4 mmol/m3 (bottom) in the Mediterranean Sea as simulated by RegCM-ES.

Overall, this analysis has demonstrated that RegCM-ES has the capabilities required to become a powerful tool for studying regional dynamics and impacts of climate change on the Mediterranean Sea and other ocean basins around the world.

 

Authors:
Marco Reale (Abdus Salam International Centre for theoretical physics-ICTP, National Institute of Oceanography and Experimental Geophysics-OGS)
Filippo Giorgi (Abdus Salam International Centre for theoretical physics-ICTP)
Cosimo Solidoro (National Institute of Oceanography and Experimental Geophysics-OGS)
Valeria Di Biagio (National Institute of Oceanography and Experimental Geophysics-OGS)
Fabio Di Sante (Abdus Salam International Centre for theoretical physics-ICTP)
Laura Mariotti (National Institute of Oceanography and Experimental Geophysics-OGS)
Riccardo Farneti (Abdus Salam International Centre for theoretical physics-ICTP)
Gianmaria Sannino (Italian National Agency for New Technologies, Energy and Sustainable Economic Development-ENEA)

Surface bacterial communities respond to rapid changes in the western Arctic

Posted by mmaheigan 
· Tuesday, January 7th, 2020 

During the western Arctic summer open water season, latitudinal differences in the physical and biogeochemical features of the surface water are apparent from the Bering Strait to the Chukchi Borderland. Lower latitude regions (i.e. Bering Strait to Chukchi Shelf) are primarily driven by the inflow of Pacific waters that supply nutrients and heat, leading to high primary production. Conversely, the higher latitude regions (i.e. Chukchi Borderland and Canada Basin) are relatively cold, fresh, and oligotrophic because the surface layer is influenced by freshwater inputs from melting ice and rivers via the Beaufort Gyre. Mixing of the two surface water masses in the western Arctic produces a physicochemical frontal zone (FZ) in the Chukchi Sea.

In a recent study published in Scientific Reports, authors used observations from summer 2017 to investigate latitudinal variations in bacterial community composition in surface waters between the Bering Strait and Chukchi Borderland and the underlying processes driving the changes. Results indicate three distinctive communities: 1) Southern Chukchi (SC) bacterial communities are associated with nutrient-rich conditions, including genera such as Sulfitobacter; 2) a northern Chukchi (NC) bacterial community that dominated by SAR clades, Flavobacterium, Paraglaciecola, and Polaribacter, genera associated with low nutrients and sea ice conditions. If climate-driven changes in the western Arctic continue along the same trajectory, it’s likely we will see altered bacterial communities. If the impact of warm, nutrient-rich Pacific water inflows dominates, it is likely that the productive SC region will expand ­­and the FZ will move northward, leading to nutrient enrichment in the western Arctic (Figure 1). In response, bacterial communities would be dominated by organic matter decomposers, such as Sulfitobacter, due to high primary productivity. However, if the impact of sea-ice meltwater dominates, then the oligotrophic NC region will expand and the FZ will move southward, leading to nutrient depletion in western Arctic surface waters (Figure 1). Continued monitoring in this region will enhance our understanding of how bacterial communities respond (Figure 1b) to a rapidly changing western Arctic Ocean.

Figure 1. (a) Map of the August 2017 Ice Breaker RV Araon western Arctic Ocean sampling stations used in this study. The basemap shows the Chl-a concentration contour (blue to red background colors). Pink, green, and blue circles represent stations in the South Chukchi (SC), Frontal Zone (FZ), and Northern Chukchi (NC) regions. (b) Schematic diagram of surface bacterial community distribution in response to future western Arctic Ocean changes.

Authors:
Il-Nam Kim (Department of Marine Science, Incheon National University)
Sung-Ho Kang (Korea Polar Research Institute)
Eun Jin Yang (Korea Polar Research Institute)

Phytoplankton bloom from molten lava

Posted by mmaheigan 
· Wednesday, September 18th, 2019 

During June-August 2018, the oligotrophic North Pacific Ocean received an enormous quantity of nutrients in the form of molten lava, delivered by the erupting Kilauea on the big island of Hawaii.  A phytoplankton bloom formed in response to the input of lava and an expedition was rapidly mobilized to determine its composition and the relevant biogeochemistry. We found that in addition to the nutrients derived from lava, exogenous nitrate was also present in the surface waters. Remotely operated vehicle observations in September 2019 by scientists at the Woods Hole Oceanographic Institution showed that lava from the 2018 eruption had reached depths of 700 m. Therefore, enabled by the intensity of the eruption and the island’s steep bathymetry, lava flows were able to extend below the thermocline and penetrate into nitrate-rich waters. Based on isotopic signatures of nitrate in the bloom, we inferred that heating of deep ocean waters resulted in the formation of buoyant seawater plumes, which rose to the sea surface.  The rapid response expedition in July 2018 provided a unique opportunity to see first-hand how a massive input of exogenous nutrients alters marine ecosystems attuned to oligotrophic conditions.

Read more:
Ducklow, H. and T. Plank (06 Sep 2019) Volcano-stimulated marine photosynthesis. Science. Vol. 365, Issue 6457, pp. 978-979
DOI: 10.1126/science.aay8088>

Wilson, S. et al. (06 Sep 2019) Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean. Science Vol. 365, Issue 6457, pp.1040-1044
DOI: 10.1126/science.aax4767

Elusive protists transport large quantities of silica into the ocean interior

Posted by hbenway 
· Friday, September 7th, 2018 

Phaeodaria are single-celled eukaryotes (a.k.a. protists) belonging to the supergroup Rhizaria. Like diatoms, phaeodarians build up skeletons made of opaline silica, but unlike their emblematic relatives, phaeodarians have been largely ignored in the marine silica cycle.

The contribution of phaeodarians to total biogenic silica (bSiO2) export is markedly enhanced at low total bSiO2 export (analysis did not include data from 2014 due to abnormally depleted phaeodarian population).

In a recent study published in Global Biogeochemical Cycles (also see related Research Spotlight in AGU Eos), authors used a combination of extensive sediment trap deployments and in situ imagery during four cruises of the California Current Ecosystem Long-Term Ecological Research (CCE-LTER) Program off the coast of California to quantify biogenic silica export mediated by giant phaeodarians (>600 µm). These data revealed that giant phaeodarians possess among the highest recorded cellular silica content (up to 43 µg Si cell-1). In addition, measurements of vertical fluxes suggest that these organisms can play a surprisingly large role in silica export (ranging from 10-80% of total silica export) in more oligotrophic waters. Also, because they are most abundant in waters below the euphotic zone, phaeodarians contribute to increased biogenic silica flux in the mesopelagic, in contrast with typically observed decreases in carbon flux with depth. Given their significant contribution to silica export, phaeodarians should be considered in global budgets and models of ocean silica cycles, especially in oligotrophic waters.

Authors
Tristan Biard (Scripps Institution of Oceanography)
Jeffrey W. Krause (University of Southern Alabama)
Michael R. Stukel (Florida State University)
Mark D. Ohman (Scripps Institution of Oceanography)

Filter by Keyword

abundance acidification africa air-sea interactions alkalinity allometry ammonium AMOC anoxia anoxic Antarctic anthropogenic carbon aragonite saturation arctic arsenic Atlantic Atlantic modeling atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria BATS benthic bgc argo bioavailability biogeochemical cycles biogeochemical models biogeochemistry biological pump biological uptake biophysics bloom blooms blue carbon bottom water boundary layer buffer capacity CaCO3 calcification calcite carbon-climate feedback carbon-sulfur coupling carbon cycle carbon dioxide carbon sequestration Caribbean CCA CCS changing marine ecosystems changing ocean chemistry chemoautotroph chesapeake bay chl a chlorophyll circulation climate change CO2 coastal darkening coastal ocean cobalt Coccolithophores community composition conservation cooling effect copepod coral reefs currents cyclone DCM decomposers decomposition deep convection deep ocean deep sea coral deoxygenation depth diagenesis diatoms DIC diel migration dimethylsulfide dinoflagellate dissolved inorganic carbon dissolved organic carbon DOC DOM domoic acid dust DVM earth system models ecosystem state eddy Education Ekman transport emissions ENSO enzyme equatorial regions error ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export EXPORTS extreme events extreme weather events faecal pellets filter feeders filtration rates fire fish Fish carbon fisheries floats fluid dynamics fluorescence food webs forams freshening freshwater frontal zone functional role future oceans geochemistry geoengineering GEOTRACES glaciers gliders global carbon budget global warming go-ship grazing greenhouse gas Greenland groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact hurricane hydrothermal hypoxia ice age ice cores ice cover industrial onset inverse circulation iron iron fertilization isotopes jellies katabatic winds kelvin waves krill kuroshio land-ocean continuum larvaceans lateral transport LGM lidar ligands light light attenuation mangroves marine heatwave marine snowfall marshes Mediterranean meltwater mesopelagic mesoscale metagenome metals methane microbes microlayer microorganisms microscale microzooplankton midwater mixed layer mixed layers mixotrophy modeling mode water molecular diffusion MPT multi-decade NASA NCP net community production new technology nitrate nitrogen nitrogen fixation nitrous oxide north atlantic north pacific nutricline nutrient budget nutrient cycling nutrient limitation nutrients OA ocean-atmosphere ocean acidification ocean carbon uptake and storage ocean color ocean observatories ODZ oligotrophic omics OMZ open ocean optics organic particles overturning circulation oxygen pacific paleoceanography particle flux pCO2 PDO peat pelagic pH phenology phosphorus photosynthesis physical processes physiology phytoplankton plankton POC polar regions pollutants prediction primary productivity Prochlorococcus proteins pteropods pycnocline radioisotopes remineralization remote sensing residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satell satellite scale seafloor seagrass sea ice sea level rise seasonal patterns sea spray seaweed sediments sensors shelf system shells ship-based observations shorelines silicate sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST subduction submesoscale subpolar subtropical sulfate surface surface ocean Synechococcus teleconnections temperate temperature temporal covariations thermocline thermohaline thorium tidal time-series time of emergence top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport volcano water clarity water quality western boundary currents wetlands winter mixing zooplankton

Copyright © 2021 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.