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Using BGC-Argo to obtain depth-resolved net primary production

Posted by mmaheigan

· Friday, July 23rd, 2021

Net primary production (NPP)—the organic carbon produced by the phytoplankton minus the organic carbon respired by phytoplankton themselves—serves as a major energy source of the marine ecosystem. Traditional methods for measuring NPP rely on ship-based discrete sampling and bottle incubations (e.g., ¹⁴C incubation), which introduce potential artifacts and limit the spatial and temporal data coverage of the global ocean. The global distribution of NPP has been estimated using satellite observations, but the satellite remote sensing approach cannot provide direct information at depth.

Figure 1. Panel A. Trajectories of 5 BGC-Argo and 1 SOS-Argo with the initial float deployment locations denoted by filled symbols. The dash-line at 47° N divided the research area into the northern (temperate) and southern (subtropical) regions. Stars indicate ship stations where ¹⁴C NPP values were measured during NAAMES cruises and compared with NPP from nearby Argo floats. Panels B and C. Monthly climatologies of net primary production (NPP, mmol m^-3 d^-1) profiles in the northern and southern regions of the research area, derived from BGC-Argo measurements using the PPM model. The shadings indicate one standard deviation. The red dotted line indicates mixed layer depth (MLD, m), and the yellow dashed line shows euphotic depth (Z_1%, m).

To fill this niche, a recent study in Journal of Geophysical Research: Biogeosciences, applied bio-optical measurements from Argo profiling floats to study the year-round depth-resolved NPP of the western North Atlantic Ocean (39° N to 54° N). The authors calculated NPP with two bio-optical models (Carbon-based Productivity Model, CbPM; and Photoacclimation Productivity Model, PPM). A comparison with NPP profiles from ¹⁴C incubation measurements showed advantages and limitations of both models. CbPM reproduced the magnitude of NPP in most cases, but had artifacts in the summer (a large NPP peak in the subsurface) due to the subsurface chlorophyll maximum caused by photoacclimation. PPM avoided the artifacts in the summer from photoacclimation, but the magnitude of PPM-derived NPP was smaller than the ¹⁴C result. Latitudinally varying NPP were observed, including higher winter NPP/lower summer NPP in the south, timing differences in NPP seasonal phenology, and different NPP depth distribution patterns in the summer months. With a 6-month record of concurrent oxygen and bio-optical measurements from two Argo floats, the authors also demonstrated the ability of Argo profiling floats to obtain estimates of the net community production (NCP) to NPP ratio (f-ratio), ranging from 0.3 in July to -1.0 in December 2016.

This work highlights the utility of float bio-optical profiles in comparison to traditional measurements and indicates that environmental conditions (e.g. light availability, nutrient supply) are major factors controlling the seasonality and spatial (horizontal and vertical) distributions of NPP in the western North Atlantic Ocean.

Authors:
Bo Yang (University of Virginia, UM CIMAS/NOAA AOML)
James Fox (Oregon State University)
Michael J. Behrenfeld (Oregon State University)
Emmanuel S. Boss (University of Maine)
Nils Haëntjens (University of Maine)
Kimberly H. Halsey (Oregon State University)
Steven R. Emerson (University of Washington)
Scott C. Doney (University of Virginia)

When GEOTRACES‐based synthesis efforts improve global iron-cycling understanding

Posted by mmaheigan

· Friday, December 18th, 2020

Authors of a recent paper published in Global Biogeochemical Cycles conducted a detailed study of the residence times of total and dissolved iron (Fe) in the upper layers (0-250m) of the global ocean. Using historical (1980-2007) and recent GEOTRACES data, they compiled an impressive data set comprising dissolved, filtered and trap-collected particulate Fe spanning different biogeochemical oceanographic provinces. They also used indirect isotopic approaches to calculate Fe export from the surface layers (e.g., based on thorium-234-uranium-238 disequilibrium). The study revealed that upper ocean residence times of total Fe consistently fell between 10 and 100 days, despite a broad range of total Fe inventories and ocean biogeochemical settings. Conversely, dissolved Fe residences times were longer and more variable, cycling on sub annual to annual time scales. In addition to these detailed insights on upper ocean Fe cycling, these new data sets will help constrain the rate constant for total Fe export, an important term for exploring links between ocean Fe cycling and the global carbon cycle in ocean biogeochemical models.

Figure Caption: In-situ iron concentration and export (F_tot) estimates from numerous GEOTRACES efforts were combined with prior study results to constrain the residence time of iron in the upper ocean (diagonal lines, lower panel). Broad patterns in iron residence times emerged when contrasting coastal and open regions (pink vs. white), as well as with high and low latitude zones (black vs. white). Despite clear regional differences, however, the majority of residence times for total iron fell into a small range between 10 and 100 days.

Authors:
E. E. Black (former WHOI, current Dalhousie University, Lamont Doherty Earth Observatory)
S. S. Kienast (Dalhousie University)
N. Lemaitre (Institute of Geochemistry and Petrology, Zürich, Switzerland)
P. J. Lam (University of California, Santa Cruz)
R. F. Anderson (Lamont Doherty Earth Observatory)
H. Planquette (University Brest)
F. Planchon (University Brest)
K. O. Buesseler (WHOI)

This is a joint highlight with GEOTRACES

How zooplankton control carbon export in the Southern Ocean

Posted by mmaheigan

· Thursday, December 3rd, 2020

The Southern Ocean exhibits an inverse relationship between surface primary production and export flux out of the euphotic zone. The causes of this production-export decoupling are still under debate. A recently published mini review in Frontiers in Marine Science focused on zooplankton, an important component of Southern Ocean food webs and the biological pump. The authors compared carbon export regimes from the naturally iron-fertilised Kerguelen Plateau (high surface production, but generally low export) with the iron-limited and less productive high nutrient, low chlorophyll (HNLC) waters south of Australia, where carbon export is relatively high.

Figure 1: The role of zooplankton in establishing the characteristic export regimes at two sites in the Southern Ocean, (a) the highly productive northern Kerguelen Plateau, which exhibits low export, and (b) the iron-limited waters south of Australia with low production, but relatively high carbon export.

Size structure and zooplankton grazing pressure are found to shape carbon export at both sites. On the Kerguelen Plateau, a large size spectrum of zooplankton acts as “gate-keeper” to the mesopelagic by significantly reducing the sinking flux of phytoaggregates, which establishes the characteristic low export regime. In the HNLC waters, however, the zooplankton community is low in biomass and grazes predominantly on smaller particles, which leaves the larger particles for export and leads to relatively high export flux.

Gaps in knowledge related to insufficient seasonal data coverage, understudied carbon flux pathways, and associated mesopelagic processes limit our current understanding of carbon transfer through the water column and export. More integrated data collection efforts, including the use of autonomous profiling floats (e.g., BGC-Argo), stationary moorings, etc., will improve seasonal carbon flux data coverage, thus enabling more reliable estimation of carbon export and storage in the Southern Ocean and improved projection of future changes in carbon uptake and atmospheric carbon dioxide levels.

Authors:
Svenja Halfter (University of Tasmania)
Emma Cavan (Imperial College London)
Ruth Eriksen (CSIRO)
Kerrie Swadling (University of Tasmania)
Philip Boyd (University of Tasmania)

Water clarity impacts temperature and biogeochemistry in Chesapeake Bay

Posted by mmaheigan

· Thursday, December 3rd, 2020

Estuarine water clarity is determined by suspended materials in the water, including colored dissolved organic matter, phytoplankton, sediment, and detritus. These constituents directly affect temperature because when water is opaque, sunlight heats only the shallowest layers near the surface, but when water is clear, sunlight can penetrate deeper, warming the waters below the surface. Despite the importance of accurately predicting temperature variability, many numerical modeling studies do not adequately parameterize this fundamental relationship between water clarity and temperature.

In a recent study published in Estuaries and Coasts, the authors quantified the impact of a more realistic representation of water clarity in a hydrodynamic-biogeochemical model of the Chesapeake Bay by comparing two simulations: (1) water clarity is constant in space and time for the calculation of solar heating vs. (2) water clarity varies with modeled concentrations of light-attenuating materials. In the variable water clarity simulation (2), the water is more opaque, particularly in the northern region of the Bay. During the spring and summer months, the lower water clarity in the northern Bay is associated with warmer surface temperatures and colder bottom temperatures. Warmer surface temperatures encourage phytoplankton growth and nutrient uptake near the head of the Bay, thus fewer nutrients are transported downstream. These conditions are exacerbated during high-river flow years, when differences in temperature, nutrients, phytoplankton, and zooplankton extend further seaward.

Figure 1: Top row: Difference in the light attenuation coefficient for shortwave heating, kh[m-1] (variable minus constant light attenuation simulation). June, July, and August average for (A) 2001, (B) average of 2001-2005, and (C) 2003; difference in bottom temperatures [oC] (variable minus constant). Bottom row: Difference in June, July, and August average bottom temperature for (D) 2001, (E) average of 2001-2005, and (F) 2003. Data for 2001 are representative of low river discharge, and 2003 are representative high river discharge years.

This work demonstrates that a constant light attenuation scheme for heating calculations in coupled hydrodynamic-biogeochemical models underestimates temperature variability, both temporally and spatially. This is an important finding for researchers who use models to predict future temperature variability and associated impacts on biogeochemistry and species habitability.

Authors:
Grace E. Kim (NASA, Goddard Space Flight Center)
Pierre St-Laurent (VIMS, William & Mary)
Marjorie A.M. Friedrichs (VIMS, William & Mary)
Antonio Mannino (NASA, Goddard Space Flight Center)

Tiny phytoplankton seen from space

Posted by mmaheigan

· Thursday, November 19th, 2020

Picophytoplankton, the smallest phytoplankton on Earth, are dominant in over half of the global surface ocean, growing in low-nutrient “ocean deserts” where diatoms and other large phytoplankton have difficult to thrive. Despite their small size, picophytoplankton collectively account for well over 50% of primary production in oligotrophic waters, thus playing a major role in sustaining marine food webs.

In a recent paper published in Optics Express, the authors use satellite-detected ocean color (namely remote-sensing reflectance, R_rs(λ)) and sea surface temperature to estimate the abundance of the three picophytoplankton groups—the cyanobacteria Prochlorococcus and Synechococcus, and autotrophic picoeukaryotes. The authors analysed R_rs(λ) spectra using principal component analysis, and principal component scores and SST were used in the predictive models. Then, they trained and independently evaluated the models with in-situ data from the Atlantic Ocean (Atlantic Meridional Transect cruises). This approach allows for the satellite detection of the succession of species across ocean oligotrophic ecosystem boundaries, where these cells are most abundant (Figure 1).

Figure 1. Cell abundances of the three major picophytoplankton groups (the cyanobacteria Prochlorococcus and Synechococcus, and a collective group of autotrophic picoeukaryotes) in surface waters of the Atlantic Ocean. Abundances are shown for the dominant group in terms of total biovolume (converted from cell abundance).

Since these organisms can be used as proxies for marine ecosystem boundaries, this method can be used in studies of climate and ecosystem change, as it allows a synoptic observation of changes in picophytoplankton distributions over time and space. For exploring spectral features in hyperspectral R_rs(λ) data, the implementation of this model using data from future hyperspectral satellite instruments such as NASA PACE’s Ocean Color Instrument (OCI) will extend our knowledge about the distribution of these ecologically relevant phytoplankton taxa. These observations are crucial for broad comprehension of the effects of climate change in the expansion or shifts in ocean ecosystems.

Authors:
Priscila K. Lange (NASA Goddard Space Flight Center / Universities Space Research Association / Blue Marble Space Institute of Science)
Jeremy Werdell (NASA Goddard Space Flight Center)
Zachary K. Erickson (NASA Goddard Space Flight Center)
Giorgio Dall’Olmo (Plymouth Marine Laboratory)
Robert J. W. Brewin (University of Exeter)
Mikhail V. Zubkov (Scottish Association for Marine Science)
Glen A. Tarran (Plymouth Marine Laboratory)
Heather A. Bouman (University of Oxford)
Wayne H. Slade (Sequoia Scientific, Inc)
Susanne E. Craig (NASA Goddard Space Flight Center / Universities Space Research Association)
Nicole J. Poulton (Bigelow Laboratory for Ocean Sciences)
Astrid Bracher (Alfred-Wegener-Institute Helmholtz Center for Polar and Marine Research / University of Bremen)
Michael W. Lomas (Bigelow Laboratory for Ocean Sciences)
Ivona Cetinić (NASA Goddard Space Flight Center / Universities Space Research Association)

Timing matters: Correcting float-based measurements of diurnal oxygen variability

Posted by mmaheigan

· Friday, November 6th, 2020

Despite its fundamental importance to the global carbon cycle, climate, and marine ecosystems, oceanic primary production is grossly under-sampled. Autonomous platforms represent an important frontier for expanding measurements of marine primary productivity in time and space, but this requires the establishment of robust, standardized methods to obtain reliable data from these platforms. Using data from profiling floats deployed in the northern Gulf of Mexico, authors of a recent study published in Biogeosciences demonstrated, for the first time, that daily cycles of dissolved oxygen can be observed with Argo-type profiling floats. The floats were instructed to profile continuously, resulting in about one profile every three hours. The floats recorded data both on the ascent (upcast) and the descent (downcast). Adjacent casts showed hysteresis in gradient areas, i.e. a lag in the concentration measurement, due to the slow response time of oxygen sensors.

Figure 1: Example of raw oxygen measurements from a downcast (dark purple line) and an upcast (dark green line) and corrected profiles (lighter purple and green lines) in (a) density and (b) pressure coordinates. (c) Upcasts and downcasts (top 150 m) plotted against each other with raw data (purple) and data corrected according to the new method (red). (d) The root-mean-square difference (RMSD) between the upcast and downcast after correcting casts for a range of time constants (τ), showing an optimal τ value in this case of 76 s (red dot).

To correct for these measurement errors, the authors developed a method to determine sensor response time in situ, using an established process for correcting sensor response time errors. This method requires a timestamp associated with each observation. The response time parameter (τ) was determined by correcting consecutive profiles taken in opposite directions using a range of possible values and finding the minimum root-mean-square-difference between them (Figure 1). In light of these findings, future oxygen measurements from Argo floats should be transmitted with time stamps for a calibration period during which up- and downcasts are recorded to facilitate response time correction. The method developed here will contribute to more accurate measurement of dissolved oxygen, thus improving the quality of derived quantities such as primary productivity.

Authors
Christopher Gordon (Dalhousie University)
Katja Fennel (Dalhousie University)
Clark Richards (Fisheries and Oceans Canada)
Nick Shay (University of Miami)
Jodi Brewster (University of Miami)

Austral summer vertical migration patterns in Antarctic zooplankton

Posted by mmaheigan

· Thursday, October 15th, 2020

Sunrise and sunset are the main cues driving zooplankton diel vertical migration (DVM) throughout the world’s oceans. These marine animals balance the trade-off between feeding in surface waters at night and avoiding predation during the day at depth. Near-constant daylight during polar summer was assumed to dampen these daily migrations. In a recent paper published in Deep-Sea Research I, authors assessed austral summer DVM patterns for 15 taxa over a 9-year period. Despite up to 22 hours of sunlight, a diverse array of zooplankton – including copepods, krill, pteropods, and salps – continued DVM.

Figure caption: Mean day (orange) and night (blue) abundance of (A) the salp Salpa thompsoni, (B) the krill species Thysanoessa macrura, (C) the pteropod Limacina helicina, and (D) chaetognaths sampled at discrete depth intervals from 0-500m. Horizontal dashed lines indicate weighted mean depth (WMD). N:D is the night to day abundance ratio for 0-150 m. Error bars indicate one standard error. Sample size n = 12 to 22. Photos by Larry Madin, Miram Gleiber, and Kharis Schrage.

The Palmer Antarctica Long-Term Ecological Research (LTER) Program conducted this study using a MOCNESS (Multiple Opening/Closing Net and Environmental Sensing System) to collect depth-stratified samples west of the Antarctic Peninsula. The depth range of migrations during austral summer varied across taxa and with daylength and phytoplankton biomass and distribution. While most taxa continued some form of DVM, others (e.g., carnivores and detritivores) remained most abundant in the mesopelagic zone, regardless of photoperiod, which likely impacted the attenuation of vertical carbon flux. Given the observed differences in vertical distribution and migration behavior across taxa, ongoing changes in Antarctic zooplankton assemblages will likely impact carbon export pathways. More regional, taxon-specific studies such as this are needed to inform efforts to model zooplankton contributions to the biological carbon pump.

Authors:
John Conroy (VIMS, William & Mary)
Deborah Steinberg (VIMS, William & Mary)
Patricia Thibodeau (VIMS, William & Mary; currently University of Rhode Island)
Oscar Schofield (Rutgers University)

Profiling floats reveal fate of Southern Ocean phytoplankton stocks

Posted by mmaheigan

· Tuesday, September 1st, 2020

More observations are needed to constrain the relative roles of physical (advection), biogeochemical (downward export), and ecological (grazing and biological losses) processes in driving the fate of phytoplankton blooms in Southern Ocean waters. In a recent paper published in Nature Communications, authors used seven Biogeochemical Argo (BGC-Argo) floats that vertically profiled the upper ocean every ten days as they drifted for three years across the remote Sea Ice Zone of the Southern Ocean. Using the floats’ biogeochemical sensors (chlorophyll, nitrate, and backscattering) and regional ratios of nitrate consumption:chlorophyll synthesis, the authors developed a new approach to remotely estimate the fate of the phytoplankton stocks, enabling calculations of herbivory and of downward carbon export. The study revealed that the major fate of phytoplankton biomass in this region is grazing, which consumes ~90% of stocks. The remaining 10% is exported to depth. This pattern was consistent throughout the entire sea ice zone where the floats drifted, from 60°-69° South.

Figure Caption: Southern Ocean Chlorophyll a climatology and floats’ trajectories (top panel). Total losses of Chlorophyll a (including grazing and phytodetritus export, left panel). Phytodetritus export (right panel).

This study region comprises two of the three major krill growth and development areas—the eastern Weddell and King Haakon VII Seas and Prydz Bay and the Kerguelen Plateau—so the observed grazing was probably due to Antarctic krill, underscoring their pivotal importance in this ecosystem. Building upon the greater understanding of ocean ecosystems via satellite ocean colour development in the 1990s, BGC-Argo floats and this new approach will allow remote monitoring of the different fates of phytoplankton stocks and insights into the status of the ecosystem.

Authors:
Sebastien Moreau (Norwegian Polar Institute, Tromsø, Norway)
Philip Boyd (Institute for Marine and Antarctic Studies, Hobart, Australia)
Peter Strutton (Institute for Marine and Antarctic Studies, Hobart, Australia)

A close-up view of biomass controls in Southern Ocean eddies

Posted by mmaheigan

· Thursday, August 20th, 2020

Southern Ocean biological productivity is instrumental in regulating the global carbon cycle. Previous correlative studies associated widespread mesoscale activity with anomalous chlorophyll levels. However, eddies simultaneously modify both the physical and biogeochemical environments via several competing pathways, making it difficult to discern which mechanisms are responsible for the observed biological anomalies within them. Two recently published papers track Southern Ocean eddies in a global, eddy-resolving, 3-D ocean simulation. By closely examining eddy-induced perturbations to phytoplankton populations, the authors are able to explicitly link eddies to co-located biological anomalies through an underlying mechanistic framework.

Figure caption: Simulated Southern Ocean eddies modify phytoplankton division rates in different directions of depending on the polarity of the eddy and background seasonal conditions. During summer anticyclones (top right panel) deliver extra iron from depth via eddy-induced Ekman pumping and fuel faster phytoplankton division rates. During winter (bottom right panel) the extra iron supply is eclipsed by deeper mixed layer depths and elevated light limitation resulting in slower division rates. The opposite occurs in cyclones.

In the first paper, the authors observe that eddies primarily affect phytoplankton division rates by modifying the supply of iron via eddy-induced Ekman pumping. This results in elevated iron and faster phytoplankton division rates in anticyclones throughout most of the year. However, during deep mixing winter periods, exacerbated light stress driven by anomalously deep mixing in anticyclones can dominate elevated iron and drive division rates down. The opposite response occurs in cyclones.

The second paper tracks how eddy-modified division rates combine with eddy-modified loss rates and physical transport to produce anomalous biomass accumulation. The biomass anomaly is highly variable, but can exhibit an intense seasonal cycle, in which cyclones and anticyclones consistently modify biomass in different directions. This cycle is most apparent in the South Pacific sector of the Antarctic Circumpolar Current, a deep mixing region where the largest biomass anomalies are driven by biological mechanisms rather than lateral transport mechanisms such as eddy stirring or propagation.

It is important to remember that the correlation between chlorophyll and eddy activity observable from space can result from a variety of physical and biological mechanisms. Understanding the nuances of how these mechanisms change regionally and seasonally is integral in both scaling up local observations and parameterizing coarser, non-eddy resolving general circulation models with embedded biogeochemistry.

Authors:
Tyler Rohr (Australian Antarctic Partnership Program, previously at MIT/WHOI)
Cheryl Harrison (University of Texas Rio Grande Valley)
Matthew Long (National Center for Atmospheric Research)
Peter Gaube (University of Washington)
Scott Doney (University of Virginia)

Unexpected patterns of carbon export in the Southern Ocean

Posted by mmaheigan

· Tuesday, July 7th, 2020

The Southern Ocean is a major player in driving global distributions of heat, carbon dioxide, and nutrients, making it key to ocean chemistry and the earth’s climate system. In the ocean, biological production and export of organic carbon are commonly linked to places with high nutrient availability. A recent paper, published in Global Biogeochemical Cycles, highlighting new observations from robotic profiling floats demonstrates that areas of high carbon export in the Southern Ocean are actually associated with very low concentrations of iron, an important micronutrient for supporting phytoplankton growth. This suggests a decoupling between the production and export of organic carbon in this region.

Figure caption: (A) Meridional pattern of Annual Net Community Production (ANCP) (equivalent to carbon export) (± standard deviation) in the Southern Ocean (blue line with circles and shaded area), carbon export estimates from previous satellite-based analyses (blue dashed line), and silicate to nitrate (Si:NO₃) ratio of the surface water (black continuous line). Grey dotted line shows a Si:NO₃ = 1 mol mol⁻¹, characteristic of nutrient-replete diatoms. (B) Meridional pattern of Southern Ocean nutrient concentrations, including dissolved iron (Fe) concentration (black line), nitrate (red line), and silicate (blue line). (C) Mean 2014–2015 annual zonally averaged air-sea flux of CO₂ computed using neural network interpolation method. STF = Subtropical Front, PF = Antarctic Polar Front, SIF = Seasonal Ice Front.

Using observations of nutrient and oxygen drawdown from a regional network of profiling Biogeochemical-Argo floats deployed as part of the Southern Ocean Carbon and Climate Observations and Modeling project (SOCCOM), the authors calculated estimates of Southern Ocean carbon export. A meridional pattern in biological carbon export emerged, showing peak export near the Antarctic Polar Front (PF) associated with minima in surface iron concentrations and dissolved silicate to nitrate ratios. Previous studies have shown that under iron-limiting conditions, diatoms increase their uptake ratio of silicate with respect to other nutrients (e.g., nitrogen), resulting in silicification. Here, the authors hypothesize that iron limitation promotes silicification in Southern Ocean diatoms, as evidenced by the low silicate to nitrate ratio of surface waters around the Antarctic Polar Front. High diatom silicification increases ballasting of particulate organic carbon and hence overall carbon export in this region. The resulting meridional pattern of organic carbon export is similar to that of the air-sea flux of carbon dioxide in the Southern Ocean, underscoring the importance of the biological carbon pump in controlling the spatial pattern of oceanic carbon uptake in this region.

Authors:
Lionel A. Arteaga (Princeton University)
Markus Pahlow (Helmholtz Centre for Ocean Research Kiel, GEOMAR)
Seth M. Bushinsky (University of Hawaii)
Jorge L. Sarmiento (Princeton University)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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