Archive for open ocean

The arsenic respiratory cycle in pelagic waters of Oxygen Deficient Zones

Posted by mmaheigan 
· Wednesday, October 30th, 2019 

Oxygen Deficient Zones (ODZs) are naturally occurring functionally anoxic regions of the open ocean which can act as proxies for early Earth’s anoxic ocean. Without free oxygen, microorganisms in these regions use alternative electron acceptors to oxidize organic material. These functionally anoxic regions are also hotspots for chemoautotrophic pathways. Some microorganisms can use arsenic based compounds to oxidize organic material, and others can couple nitrate reduction with arsenic oxidation supporting autotrophic carbon fixation thus linking arsenic respiration with carbon and nitrogen cycling. While arsenic concentrations in modern oceans are relatively low, the Precambrian ocean likely had periods of high arsenic concentrations. Integrating over time and space of anoxic waters, arsenic-based metabolisms may have had significant implications for the biogeochemical cycling of not only arsenic, but also carbon and nitrogen.

Figure 1: Arsenotrophic genes identified in the Eastern Tropical North Pacific Oxygen Deficient Zone. (A) Genomic complement for dissimilatory arsenate reduction assembled from metagenomes which likely supports respiration of organic matter. (B) Genomic complement for putative chemoautotrophic arsenite oxidation pathway assembled from metagenomes which may couple with nitrate reduction to support organic matter production. (C) Relative abundance of genes associated with arsenite oxidase (aioA), dissimilatory arsenate reduction (arrA), and forward dissimilatory sulfite reductase (dsrA) associated with sulfur reduction; abundance shown as a relative contribution to the total microbial community as estimated by abundance of RNA polymerase genes (rpoB). The genes arrA and forward-dsrA are more abundant in the particulate fraction, whereas aioA is more abundant in the free-living fraction. (D) Relative abundance of genes in the microbial community for the more abundant genes aioA-like and reverse form of dsrA associated with sulfur oxidation. aioA-like genes are relatively more abundant within the particulate fraction, with no strong partitioning between fractions identified for the reverse-dsrA genes. Arsenical reduction and chemoautotrophic arsenical oxidation are likely performed by different microbial groups within the ODZ communities.

Recent work in PNAS identified gene sequences for a complete arsenic respiratory cycle from Eastern Tropical North Pacific (ETNP) ODZ metagenomes. The authors identified arsenotrophic genes for dissimilatory arsenate reduction from one group of microorganisms and genes for a putative chemoautotrophic arsenite oxidation pathway from another group within the ETNP ODZ microbial community. Analysis of genomic sequences from a free-living sample and from particulate-associated sample indicate niche differentiation of these pathways—arsenate reduction genes enriched within the particulate fraction and arenite oxidation enriched in the free-living water column. In addition to the presence of these genes in metagenomes, the authors identified the active expression of these arsenotrophic genes in publicly available metatranscriptomes from the ETNP and Eastern Tropical South Pacific ODZs. Theyalso found an abundance of sequences in the ETNP ODZ for the gene aioA-like, which is a closely related enzyme to arsenite oxidase (aioA), but with an unconfirmed function. The identification of these actively expressed genes in modern ODZs enables further investigation of these cycles that were likely important in early oceans. These findings also highlight that there are still yet to be discovered respiratory pathways in ODZs. Arsenotrophy, in conjunction with other niche respiratory pathways – both known and as yet undiscovered – likely sum to a considerable contribution of energy flow and elemental cycling through these anoxic systems.

Authors:
Jaclyn Saunders (University of Washington; present affiliation Woods Hole Oceanographic Institution)
Clara Fuchsman (University of Washington; present affiliation Horn Point Laboratory)
Cedar McKay & Gabrielle Rocap (University of Washington)

 

See related University of Washington press-release

Upwelling and solubility drive global surface dissolved inorganic carbon (DIC) distribution

Posted by mmaheigan 
· Tuesday, August 20th, 2019 

What drives the latitudinal gradient in open-ocean surface DIC concentration? Understanding the processes that drive the distribution of carbon in the surface ocean is essential to the study of the ocean carbon cycle and future predictions of ocean acidification and the ocean carbon sink.

Authors of a recent study in Biogeosciences investigated causes of the observed latitudinal trend in DIC and salinity-normalized DIC (nDIC) (Figure 1). The latitudinal trend in nDIC is not driven solely by the latitudinal gradient in temperature (through its effects on solubility), as is commonly assumed. Careful analysis using the Global Ocean Data Analysis Project version 2 (GLODAPv2) database revealed that physical supply from below (upwelling, entrainment in winter) at high latitudes is another major driver of the latitudinal pattern. The contribution of physical exchange explains an otherwise puzzling observation: Surface waters are lower in nDIC in the high-latitude North Atlantic than in other basins. This cannot be accounted for by temperature difference but rather is explained by a difference in the carbon content of deeper waters (lower in the subarctic North Atlantic than in the subarctic North Pacific or Southern Ocean) that are mixed up into the surface during winter months.

Figure caption: (Top) spatial distributions of surface ocean DIC and (bottom) salinity-normalised (nDIC). Both, most notably nDIC, increase towards the poles. Values are normalised to year 2005 to remove bias from changing levels of atmospheric CO2 in some observations before and after 2005. Data are from GLODAPv2.

These results also suggest that the upwelling/entrainment of water that is high in alkalinity generates a large and long-lasting effect on DIC, one that persists beyond the timescale of CO2 gas exchange equilibration with the . That is to say, the impact of changes in upwelling on the ocean’s carbon source-sink strength depends not only on the DIC content of the upwelled water but also on its TA content.

Authors:
Yingxu Wu (University of Southampton)
Mathis Hain (University of California, Santa Cruz)
Matthew Humphreys (University of East Anglia and University of Southampton)
Sue Hartman (National Oceanography Centre, Southampton)
Toby Tyrrell (University of Southampton)

Dramatic Increase in Chlorophyll-a Concentrations in Response to Spring Asian Dust Events in the Western North Pacific

Posted by mmaheigan 
· Tuesday, October 23rd, 2018 

According to Martin’s iron hypothesis, input of aeolian dust into the ocean environment temporarily relieves iron limitation that suppresses primary productivity. Asian dust events that originate in the Taklimakan and Gobi Deserts occur primarily in the spring and represent the second largest global source of dust to the oceans. The western North Pacific, where productivity is co-limited by nitrogen and iron, is located directly downwind of these source regions and is therefore an ideal location for determining the response of open water primary productivity to these dust input events.

Figure 1. Daily aerosol index values (black squares) and chlorophyll-a concentrations (mg m-3, circles) during the spring (a) 2010 (weak dust event), (b) 1998 (strong dust event) in the western North Pacific. Color scale represents difference between mixed layer depth (MLD) and isolume depth (Z0.054) that indicates conditions for typical spring blooms; water column structures of MLD and isolume were identical in the spring of 1998 and 2010. Dramatic increases in chlorophyll-a (pink shading, maximum of 5.3 mg m-3) occurred in spring 1998 with a lag time of ~10 days after the strong dust event (aerosol index >2.5) on approximately April 20 compared to constant chlorophyll-a values (<2 mg m-3) in the spring of 2010.

A recent study in Geophysical Research Letters included an analysis of the spatial dynamics of spring Asian dust events, from the source regions to the western North Pacific, and their impacts on ocean primary productivity from 1998 to 2014 (except for 2002–2004) using long-term satellite observations (daily aerosol index data and chlorophyll-a). Geographical aerosol index distributions revealed three different transport pathways supported by the westerly wind system: 1) Dust moving predominantly over the Siberian continent (>50°N); 2) Dust passing across the northern East/Japan Sea (40°N‒50°N); and 3) Dust moving over the entire East/Japan Sea (35°N‒55°N). The authors observed that strong dust events could increase ocean primary productivity by more than 70% (>2-fold increase in chlorophyll-a concentrations, Figure 1) compared to weak/non-dust conditions. This result suggests that spring Asian dust events, though episodic, may play a significant role in driving the biological pump, thus sequestering atmospheric CO2 in the western North Pacific.

Another recent study reported that anthropogenic nitrogen deposition in the western North Pacific has significantly increased over the last three decades (i.e. relieving nitrogen limitation), whereas this study indicated a recent decreasing trend in the frequency of spring Asian dust events (i.e. enhancing iron limitation). Further investigation is required to fully understand the effects of contrasting behavior of iron (i.e., decreasing trend) and nitrogen (i.e., increasing trend) inputs on the ocean primary productivity in the western North Pacific, paying attention on how the marine ecosystem and biogeochemistry will respond to the changes.

 

Authors:
Joo-Eun Yoon (Incheon National University)
Il-Nam Kim (Incheon National University)
Alison M. Macdonald (Woods Hole Oceanographic Institution)

Building ocean biogeochemistry observing capacity, one float at a time: An update on the Biogeochemical-Argo Program

Posted by mmaheigan 
· Thursday, July 5th, 2018 

By Ken Johnson (MBARI)

The Biogeochemical-Argo (BGC-Argo) Program is an international effort to develop a global network of biogeochemical sensors on Argo profiling floats that has emerged from over a decade of community discussion and planning. While there is no formal funding for this global program, it is being implemented via a series of international research projects that harness the unique capabilities provided by BGC profiling floats. The U.S. Ocean Carbon and Biogeochemistry (OCB) Program maintains and supports a U.S. BGC-Argo subcommittee as a focal point for U.S. community input on the implementation of the global biogeochemical float array and associated science program development.

Figure 1. Steve Riser deploying a SOCCOM float from the R/V Palmer

About BGC-Argo Floats
BGC-Argo floats can carry a suite of chemical and bio-optical sensors (Figure 1 – Float Schematic).  They have enough energy to make about 250 to 300 vertical profiles from 2000 m to the surface.  At a cycle time of 10 days, that corresponds to a lifetime near 7 years.  The long endurance allows the floats to resolve seasonal to interannual variations in carbon and nutrient cycling throughout the water column.  These time scales are difficult to study from ships and ocean interior processes are hard to resolve from satellites.  BGC profiling floats extend the capabilities of these traditional observing systems in significant ways.

Figure 2. Images of Navis and APEX floats used in the SOCCOM program. These floats carry oxygen, nitrate, pH, and bio-optical (chlorophyll fluorescence and backscatter) sensors.

All of the data from profiling floats operating as part of the Argo program must be available in real-time with no restrictions on access.  The Argo Global Data Assembly centers in France and the USA both provide complete listings of all BGC profiles (argo_bio-profile_index.txt) and access to the data.  Extensive documentation of the data processing protocols is available from the Argo Data Management Team.  Individual research programs, such as SOCCOM (see below), may also provide direct data access to the observed data along with value added products such as best estimates of pCO2 derived from pH sensor data.

Regional Deployments
In 2018, it is projected that 127 profiling floats with biogeochemical sensors are will be deployed, including ~40 floats by U.S. projects. Most of the U.S. deployments (30+) will be carried out by the Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) project (Figure 2 – Float Deployment). These floats will carry oxygen, nitrate, pH, chlorophyll fluorescence, and backscatter sensors. As part of the NOAA Tropical Pacific Observing System (TPOS) program, Steve Riser’s group (Univ. Washington) will deploy 3 BGC-Argo floats per year in the equatorial Pacific over the next 4 years. These floats will be equipped with oxygen, pH, bio-optical sensors and Passive Acoustic Listener (PAL) sensors, which provide wind speed estimates at 15-minute intervals while the floats are parked at 1000 m.  Wind speed is derived from the noise spectrum of breaking waves. Steve Emerson (Univ. Washington), with NSF support, is also deploying floats equipped with oxygen, nitrate and pH sensors in the equatorial Pacific. With funding from NSF, Andrea Fassbender (MBARI) will deploy two floats at Ocean Station Papa in the northeast Pacific in collaboration with the EXPORTS program. These floats will also carry oxygen, nitrate, pH, and bio-optical sensors.

Nearly 90 BGC floats will be deployed in 2018 by other nations in multiple ocean basins.  Much of this effort will focus on the North Pacific and North Atlantic.  The sensor load on these floats is somewhat variable. Some will be deployed with only oxygen sensors or bio-optical sensors for chlorophyll fluorescence and particle abundance. Others will carry the full suite of six sensors (oxygen, nitrate, pH, chlorophyll fluorescence, backscatter, and irradiance) that are outlined in the BGC-Argo Implementation Plan (BGC-Argo, 2016). These floats will contribute to the existing array of 305 biogeochemical floats (Figure 3 BGC Argo Map).

Community Activities
In response to the tremendous interest in the scientific community in the capabilities of profiling floats, OCB is sponsoring a Biogeochemical Float Workshop at the University of Washington in Seattle from July 9-13, 2018 to begin the process of transferring this expertise to the broader oceanographic community, bringing together potential users of this technology to discuss biogeochemical profiling float technology, sensors, and data management and begin the process of the intelligent design of future scientific experiments. The workshop will provide participating scientists direct access to the facilities of the Float Laboratory operated by Riser. This workshop builds on a previous OCB workshop Observing Biogeochemical Cycles at Global Scales with Profiling Floats and Gliders (Johnson et al., 2009). BGC-Argo will also have a prominent presence at the 6th Argo Science Workshop (October 22-24, 2018, Tokyo, Japan) and OceanObs19 (September 16-20, 2019, Honolulu, HI).

Figure 3. May 2018 map of the location of BGC-Argo floats that have reported in the previous month and sensor types on these floats. From jcommops.org.

BGC-Argo Publications
Several resources now highlight the capabilities of profiling floats to accomplish scientific observing goals. A web-based bibliography of biogeochemical float papers hosted on the Biogeochemical-Argo website currently includes >100 publications and continues to grow. A special issue of Journal of Geophysical Research: Oceans focused on the SOCCOM program is in progress with 11 papers now available and a dozen more forthcoming. These papers include summaries of the technical capabilities of floats and the biogeochemical sensors, comparisons of float bio-optical data with satellite remote sensing observations, seasonal and interannual assessments of air-sea oxygen flux, under-ice biogeochemistry, carbon export, comparisons of pCO2 estimated from floats with pH vs. time-series data, and net community production. The connection of float observations with numerical models is a special focus of the program and this is highlighted in several papers, including a description of the Biogeochemical Southern Ocean State Estimate (SOSE), which is a data assimilating BGC model. Results from Observing System Simulation Experiments (OSSEs) used to assess the number of floats needed for large-scale observations are also reported. The BGC-Argo steering committee is developing a community white paper for the OceanObs19 conference in September 2019. BGC-Argo also develops and distributes a community newsletter.

For more information, visit the BGC-Argo website or reach out to the U.S. BGC-Argo Subcommittee.

 

 

 

 

Do rivers supply nutrients to the open ocean?

Posted by mmaheigan 
· Wednesday, May 24th, 2017 

Rivers carry large amounts of nutrients (e.g., nitrogen and phosphorus) to the sea, but we do not know how much of that riverine nutrient supply escapes biological and chemical processing in shallow coastal waters to reach the open ocean. Most global ocean biogeochemical models, which are typically unable to resolve coastal processes, assume that either all or none of the riverine nutrients entering coastal waters actually contribute to open ocean processes.

While we know a good deal about the dynamics of individual rivers entering the coastal ocean, studies to date have been limited to a few major river systems, mainly in in developed countries. Globally, there are over 6,000 rivers entering the coastal ocean. In a recent study, Sharples et al (2017) devised a simple approach to obtain a global-scale estimate of riverine nutrient inputs based on the knowledge that low-salinity waters entering the coastal ocean tend to form buoyant plumes that turn under the influence of Earth’s daily rotation to flow along the coastline. Using published data on such flows and incorporating the effect of Earth’s rotation, they obtained estimates of typical cross-shore plume width and compared them to the local width of the continental shelf. This was used to calculate the residence time of riverine nutrients on the shelf, which is the key to estimating how much of a given nutrient is consumed in shelf waters vs. how much is exported to the open ocean.

Global distribution of the amount of riverine dissolved inorganic nitrogen that escapes the continental shelf to reach the open ocean.

The results indicate that, on a global scale, 75% (80%) of the nitrogen (phosphorus) supplied by rivers reaches the open ocean, whereas 25% (20%) of the nitrogen (phosphorus) is consumed on the shelf (e.g., fueling coastal productivity). Limited knowledge of nutrient cycling and consumption in shelf waters represents the primary source of uncertainty in this study. However, well-defined global patterns related to human land use (e.g., agricultural fertilizer use in developed nations) emerged from this analysis, underscoring the need to understand how land-use changes and other human activities will alter nutrient delivery to the coastal ocean in the future.

 

Authors:
Jonathan Sharples (School of Environmental Sciences, University of Liverpool, UK)
Jack Middelburg (Department of Earth Sciences, Utrecht University, Netherlands)
Katja Fennel (Department of Oceanography, Dalhousie University, Canada)
Tim Jickells (School of Environmental Sciences, University of East Anglia, UK)

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