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Pumped up by the cold: Increased elemental density in polar diatoms

Posted by mmaheigan

· Monday, October 28th, 2019

Large diatoms are common in polar phytoplankton blooms, contributing significantly to food webs and carbon export, but relatively little is known about their elemental biogeochemistry. A recent study in Frontiers in Marine Science showed that the size-dependent increase in cell nutrient content for polar diatoms was similar to published values for temperate diatoms, whereas the elemental density (mass per unit volume) of polar diatoms was substantially greater for all elements measured (carbon, nitrogen, silicon and phosphorus). Furthermore, at near freezing culture temperatures, there was a positive relationship between diatom size and realized growth rates near their theoretical maximum (Figure 1). Because of the differences in elemental density between carbon and silica, these diatoms exhibited particulate C:Si ratios that are commonly interpreted as a sign of iron limitation; yet these cultures were trace metal-replete. The observed elemental composition differences suggest that it may be important for polar biogeochemical models to include different representations of diatom biogeochemistry by accounting for the functions of size and near freezing temperature.

Figure 1. Left: Cellular carbon content for polar diatoms across four orders of magnitude in biovolume compared to the same relationship for a wide range of non-polar diatoms (MD&L = Menden-Deuer & Lessard, 2000). The y-intercept is the estimate of the baseline carbon density in these polar diatoms, and is significantly higher than the literature values reviewed in MD&L (2000). Right: Growth rate of the same polar diatoms expressed as a percent of their calculated maximum growth rate at 2°C. Error bars represent the range of values observed in the experiments. Maximum growth rate was estimated by 1) applying the growth rate/biovolume relationships published by Chisholm (1992) and Edwards et al. (2012) to the observed biovolume for each culture, and 2) scaling this growth rate to 2°C growth temperature using the relationship of Eppley (1972).

Authors:
Michael Lomas (Bigelow Laboratory for Ocean Sciences)
Steven Baer (Maine Maritime Academy)
Sydney Acton (Dauphin Island Sea Lab)
Jeffrey Krause (Dauphin Island Sea Lab and University of South Alabama)

The ecology of the biological carbon pump

Posted by mmaheigan

· Tuesday, October 15th, 2019

Plankton in the surface ocean convert CO₂ into organic biomass thereby fueling marine food webs. Part of this organic biomass sinks down into the deep ocean, where the surface-derived organic carbon, or respired CO₂, is locked in for decades to millennia. Without the biological carbon pump, atmospheric CO₂ would be ~200 ppm higher than it is today. We know that ecological processes in the surface ocean plankton communities have a paramount importance on the efficiency of the biological carbon pump. Unfortunately, however, the mechanisms how ecology determines sinking fluxes are poorly understood.

A recent study in Global Biogeochemical Cycles used large-scale in situ mesocosms to explore how the ecological interplay within plankton communities affects the downward flux of organic material. Organic biomass tends to sink faster when produced by smaller organisms because the sinking material they generate forms dense aggregates. Conversely, larger organisms produce relatively porous particles that sink more slowly.

Figure: Flow chart illustrating how plankton community structure affects the properties of sinking organic particles and ultimately the strength and efficiency of the biological carbon pump. The thick arrows at the bottom indicate that flux attenuation depends on the properties of particulate matter formed in the surface ocean. For example, slow-sinking porous aggregates containing large amounts of easily degradable organic substances will decay faster (right side) than dense aggregates of more refractory organic matter (left side).

The key finding of this study was the unexpectedly large influence that plankton community composition has on the degradation rate of sinking organic biomass. In fact, degradation rates changed maximally 15-fold over the course of the study while sinking speed changed only 3-fold. Degradation rate of sinking material, measured in oxygen consumption assays, was quite variable and tended to be higher for more easily degradable fresh organic matter. The rate was lower during harmful algal blooms, which produce toxic substances that inhibit organisms that feed on aggregates thereby reducing degradation rates. These findings are an important step forward as they show that our predictive understanding of the biological carbon pump could be improved substantially when linking degradation rates of sinking material with ecological processes in surface ocean plankton communities.

Authors:
L. T. Bach (University of Tasmania)
P. Stange, J. Taucher, E. P. Achterberg, M. Esposito, U. Riebesell (GEOMAR)
M. Algueró‐Muñiz (Alfred-Wegener-Institut Helmholtz)
H. Horn (NIOZ and Utrecht University)

Microbes: Gatekeepers of earth’s deep carbon?

Posted by mmaheigan

· Tuesday, May 14th, 2019

In 2017, an interdisciplinary group of early career scientists, the Biology Meets Subduction team, visited Costa Rica’s subduction zone, where the ocean floor sinks beneath the continent, to find out if subterranean microbes affect geological processes that move carbon from Earth’s surface into the deep interior.

Using carbon and helium isotope measurements of water and nearby sediments from geothermal springs in northern and central Costa Rica, the study published recently in Nature demonstrated that microbes consume and trap a small but measurable amount of the carbon sinking into the trench off Costa Rica’s Pacific coast. The microbes may also be involved in chemical processes that pull out even more carbon, leaving cement-like veins of calcite in the crust.

Figure 1: Schematic of deep carbon cycle subduction at the forearc region and into the mantle.

The team discovered that low temperatures in the forearc support microbial life and water-rock interactions that divert the down-going carbon from the subducting slab and trap it in the crust. The study estimates that about 94 percent of that redirected carbon transforms into calcite minerals and microbial biomass.

Figure 2: Biofilm in a natural seep in Costa Rica. Credit: Peter Barry.

These unexpected findings have important implications for how much carbon moves from Earth’s surface into the interior, especially over geological timescales. If these biological and geochemical processes occur worldwide, they would translate to 19% less carbon entering the deep mantle than previously estimated.

Authors:
PH Barry
JM de Moor
D Giovannelli
M Schrenk
D Hummer
T Lopez
CA Pratt
Y Alpízar Segura
A Battaglia
P Beaudry
G Bini
M Cascante
G d’Errico

M di Carl
D Fattorini
K Fullerton
E Gazel
G González
SA Halldórsson
K Iacovino
JT Kulongoski
E Manini
M Martínez
H Miller
M Nakagawa
S Ono

S Patwardhan
CJ Ramírez
F Regoli
F Smedile
S Turner
C Vetriani
M Yücel
CJ Ballentine
TP Fischer
DR Hilton
KG Lloyd

Nutrient and carbon limitation drive broad-scale patterns of mixotrophy in the ocean

Posted by mmaheigan

· Tuesday, May 14th, 2019

In the ocean, unicellular eukaryotes are often mixotrophic, which means they photosynthesize and also consume prey. In recent decades, it has become clear that mixotrophs are ubiquitous in sunlit ocean habitats. Additionally, models predict that mixotrophs have important impacts on productivity, nutrient cycling, carbon export, and food web structure. However, there is little understanding of the environmental conditions that select for a mixotrophic lifestyle, and it is unclear how mixotrophs succeed in competition with autotrophic and heterotrophic specialists. A recent study in PNAS that synthesized measurements of mixotrophic nanoflagellates showed that mixotrophs are more abundant in stratified, well-lit, low latitude environments (Figure 1A). They are also more abundant, relative to pure heterotrophs, in productive coastal environments (Figure 1B). A trait-based model analysis revealed that the success of mixotrophs depends on the fact that they are less nutrient-limited than autotrophs (due to prey-derived nutrients) and less carbon-limited than heterotrophs (due to photosynthesis). This synergy requires sufficient light, leading to success in low latitude environments. Similarly, a greater supply of dissolved nutrients relative to prey, as commonly observed in coastal environments, favors mixotrophs relative to heterotrophs. One implication of these results is that carbon fixation at lower latitudes may be enhanced by mixotrophy, while limiting nutrients may be more efficiently transferred to higher trophic levels.

Figure 1. Estimated abundance of autotrophic, mixotrophic, and heterotrophic nanoflagellates across environmental gradients in the ocean.

Author:
Kyle Edwards (Univ. Hawaii at Manoa)

Ocean’s heat cycle shows that atmospheric carbon may be headed elsewhere

Posted by hbenway

· Thursday, August 16th, 2018

Studies over the past 25 years have supported the existence of a large net land biosphere CO₂ sink of 0.5–2 PgC yr^-1. Significant uncertainties remain, however, regarding the long-term partitioning between northern, tropical, and southern land sinks, in part connected to the uncertain ocean carbon sink. These uncertainties limit our capacity to predict earth system response to anthropogenic changes and design effective mitigation strategies.

Land sinks from atmospheric inversion (1990-2010 average) with two different ocean/river fluxes: (top) previous ocean inversion-based carbon fluxes; and (bottom) updated pCO2-based air-sea flux with a scaled-up river flux of 0.78 PgC /yr.

In a recent study published in Nature Geoscience, Resplandy et al. (2018) used models and field observations to demonstrate that the world’s oceans transport heat between the northern and southern hemispheres in the same way that carbon is transported. The transport of heat, however, is easier to observe. By tracking this heat, they showed that the Southern Ocean — while still a substantial carbon sink —may not take up as much carbon as previously thought, and that ocean currents might transport 20 to 100% more carbon from the northern to the southern hemisphere. To maintain this additional transport of carbon, they showed that the amount of carbon entering the ocean from rivers may be as much as 70% higher than estimated in previous global carbon budget studies. These changes in the ocean and river carbon transport imply that up to 40% of the world’s atmospheric carbon absorbed by land ecosystems needs to be reallocated from existing estimates.

Authors
L. Resplandy, Princeton University
Ralph Keeling, Scripps Institution of Oceanography/ UCSD
Christian Rödenbeck, Max Planck Institute
Briton Stephens, NCAR
Matthew Long, NCAR
Samar Khatiwala, University of Oxford
Keith Rodgers, Princeton University
Laurent Bopp, ENS Paris
Pieter Tans, NOAA’s ESRL

Marine Snowfall at the Equator

Posted by mmaheigan

· Thursday, July 19th, 2018

The continual flow of organic particles such as dead organisms and fecal material towards the deep sea is called “marine snow,” and it plays an important role in the ocean carbon cycle and climate-related processes. This snowfall is most intense where high primary production can be observed near the surface. This is the case along the equator in the Pacific and Atlantic Oceans. However, it is not well known how particles are distributed at depth and which processes influence this distribution. A recent study published in Nature Geoscience involved the use of high-resolution particle density data using the Underwater Vision Profiler (UVP) from the equatorial Atlantic and Pacific Oceans down to a depth of 5,000 meters, revealing that several previously accepted ideas on the downward flux of particles into the deep sea should be revisited.

Figure 1. The Underwater Vision Profiler (UVP) during a trial in the Kiel Fjord. The UVP provided crucial data for the new study. Photo: Rainer Kiko, GEOMAR

It is typically assumed that the largest particle density can be found close to the surface and that density attenuates continuously with depth. However, high-resolution particle data show that density increases again in the 300-600-meter depth range. The authors attribute this observation to the daily migratory behavior of organisms such as zooplankton that retreat to these depths during the day, contributing to the particle load via defecation and mortality.

Another surprising result is the observation of many small particles below 1,000 meters depth that contribute a large fraction of the bathypelagic particle flux. This observation counters the general assumption, especially in many biogeochemical models, that particle flux at depth comprises fast sinking particles such as fecal pellets. Diminished remineralization rates of small particles or increased disaggregation of larger particles may contribute to the elevated small particle fluxes at this depth.

Figure 2. Zonal current velocity and Particulate Organic Carbon (POC) content across the equatorial Atlantic at 23˚W as observed in November 2012. From left to right: Zonal current velocity, POC content in small particle fraction and POC content in large particle fraction (adapted from Kiko et al. 2017).

This study highlights the importance of coupled biological and physical processes in understanding and quantifying the biological carbon pump. Further work on this important topic can now also be submitted to the new Frontiers in Marine Science research topic “Zooplankton and Nekton: Gatekeepers of the Biological Pump” (https://www.frontiersin.org/research-topics/8114/zooplankton-and-nekton-gatekeepers-of-the-biological-pump; Co-editors R. Kiko, M. Iversen, A. Maas, H. Hauss and D. Bianchi). The research topic welcomes a broad range of contributions, from individual-based process studies, to local and global field observations, to modeling approaches to better characterize the role of zooplankton and nekton for the biological pump.

Authors:
R. Kiko (GEOMAR)
A. Biastoch (GEOMAR)
P. Brandt (GEOMAR, University of Kiel)
S. Cravatte (LEGOS, University of Toulouse)
H. Hauss (GEOMAR)
R. Hummels (GEOMAR)
I. Kriest (GEOMAR)
F. Marin (LEGOS, University of Toulouse)
A. M. P. McDonnell (University of Alaska Fairbanks)
A. Oschlies (GEOMAR)
M. Picheral (Laboratoire d’Océanographie de Villefranche-sur-Mer, Observatoire Océanologique)
F. U. Schwarzkopf (GEOMAR)
A. M. Thurnherr (Lamont-Doherty Earth Observatory,)
L. Stemmann (Sorbonne Universités, Observatoire Océanologique)

Building ocean biogeochemistry observing capacity, one float at a time: An update on the Biogeochemical-Argo Program

Posted by mmaheigan

· Thursday, July 5th, 2018

By Ken Johnson (MBARI)

The Biogeochemical-Argo (BGC-Argo) Program is an international effort to develop a global network of biogeochemical sensors on Argo profiling floats that has emerged from over a decade of community discussion and planning. While there is no formal funding for this global program, it is being implemented via a series of international research projects that harness the unique capabilities provided by BGC profiling floats. The U.S. Ocean Carbon and Biogeochemistry (OCB) Program maintains and supports a U.S. BGC-Argo subcommittee as a focal point for U.S. community input on the implementation of the global biogeochemical float array and associated science program development.

Figure 1. Steve Riser deploying a SOCCOM float from the R/V Palmer

About BGC-Argo Floats
BGC-Argo floats can carry a suite of chemical and bio-optical sensors (Figure 1 – Float Schematic). They have enough energy to make about 250 to 300 vertical profiles from 2000 m to the surface. At a cycle time of 10 days, that corresponds to a lifetime near 7 years. The long endurance allows the floats to resolve seasonal to interannual variations in carbon and nutrient cycling throughout the water column. These time scales are difficult to study from ships and ocean interior processes are hard to resolve from satellites. BGC profiling floats extend the capabilities of these traditional observing systems in significant ways.

Figure 2. Images of Navis and APEX floats used in the SOCCOM program. These floats carry oxygen, nitrate, pH, and bio-optical (chlorophyll fluorescence and backscatter) sensors.

All of the data from profiling floats operating as part of the Argo program must be available in real-time with no restrictions on access. The Argo Global Data Assembly centers in France and the USA both provide complete listings of all BGC profiles (argo_bio-profile_index.txt) and access to the data. Extensive documentation of the data processing protocols is available from the Argo Data Management Team. Individual research programs, such as SOCCOM (see below), may also provide direct data access to the observed data along with value added products such as best estimates of pCO₂ derived from pH sensor data.

Regional Deployments
In 2018, it is projected that 127 profiling floats with biogeochemical sensors are will be deployed, including ~40 floats by U.S. projects. Most of the U.S. deployments (30+) will be carried out by the Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) project (Figure 2 – Float Deployment). These floats will carry oxygen, nitrate, pH, chlorophyll fluorescence, and backscatter sensors. As part of the NOAA Tropical Pacific Observing System (TPOS) program, Steve Riser’s group (Univ. Washington) will deploy 3 BGC-Argo floats per year in the equatorial Pacific over the next 4 years. These floats will be equipped with oxygen, pH, bio-optical sensors and Passive Acoustic Listener (PAL) sensors, which provide wind speed estimates at 15-minute intervals while the floats are parked at 1000 m. Wind speed is derived from the noise spectrum of breaking waves. Steve Emerson (Univ. Washington), with NSF support, is also deploying floats equipped with oxygen, nitrate and pH sensors in the equatorial Pacific. With funding from NSF, Andrea Fassbender (MBARI) will deploy two floats at Ocean Station Papa in the northeast Pacific in collaboration with the EXPORTS program. These floats will also carry oxygen, nitrate, pH, and bio-optical sensors.

Nearly 90 BGC floats will be deployed in 2018 by other nations in multiple ocean basins. Much of this effort will focus on the North Pacific and North Atlantic. The sensor load on these floats is somewhat variable. Some will be deployed with only oxygen sensors or bio-optical sensors for chlorophyll fluorescence and particle abundance. Others will carry the full suite of six sensors (oxygen, nitrate, pH, chlorophyll fluorescence, backscatter, and irradiance) that are outlined in the BGC-Argo Implementation Plan (BGC-Argo, 2016). These floats will contribute to the existing array of 305 biogeochemical floats (Figure 3 BGC Argo Map).

Community Activities
In response to the tremendous interest in the scientific community in the capabilities of profiling floats, OCB is sponsoring a Biogeochemical Float Workshop at the University of Washington in Seattle from July 9-13, 2018 to begin the process of transferring this expertise to the broader oceanographic community, bringing together potential users of this technology to discuss biogeochemical profiling float technology, sensors, and data management and begin the process of the intelligent design of future scientific experiments. The workshop will provide participating scientists direct access to the facilities of the Float Laboratory operated by Riser. This workshop builds on a previous OCB workshop Observing Biogeochemical Cycles at Global Scales with Profiling Floats and Gliders (Johnson et al., 2009). BGC-Argo will also have a prominent presence at the 6th Argo Science Workshop (October 22-24, 2018, Tokyo, Japan) and OceanObs19 (September 16-20, 2019, Honolulu, HI).

Figure 3. May 2018 map of the location of BGC-Argo floats that have reported in the previous month and sensor types on these floats. From jcommops.org.

BGC-Argo Publications
Several resources now highlight the capabilities of profiling floats to accomplish scientific observing goals. A web-based bibliography of biogeochemical float papers hosted on the Biogeochemical-Argo website currently includes >100 publications and continues to grow. A special issue of Journal of Geophysical Research: Oceans focused on the SOCCOM program is in progress with 11 papers now available and a dozen more forthcoming. These papers include summaries of the technical capabilities of floats and the biogeochemical sensors, comparisons of float bio-optical data with satellite remote sensing observations, seasonal and interannual assessments of air-sea oxygen flux, under-ice biogeochemistry, carbon export, comparisons of pCO₂ estimated from floats with pH vs. time-series data, and net community production. The connection of float observations with numerical models is a special focus of the program and this is highlighted in several papers, including a description of the Biogeochemical Southern Ocean State Estimate (SOSE), which is a data assimilating BGC model. Results from Observing System Simulation Experiments (OSSEs) used to assess the number of floats needed for large-scale observations are also reported. The BGC-Argo steering committee is developing a community white paper for the OceanObs19 conference in September 2019. BGC-Argo also develops and distributes a community newsletter.

For more information, visit the BGC-Argo website or reach out to the U.S. BGC-Argo Subcommittee.

Increased temperatures suggest reduced capacity for carbon

Posted by mmaheigan

· Thursday, January 18th, 2018

The ocean’s biological pump works to draw down atmospheric carbon dioxide (CO₂) by exporting carbon from the surface ocean. This process is less efficient at higher temperatures, implying a possible climate feedback. Recent work by Cael et al. provides an explanation of why this feedback occurs and an estimate of its severity.

In a highly simplified view, carbon export depends on the balance between two temperature-dependent processes: 1) The autotrophic production and 2) the heterotrophic respiration of organic carbon. Cael and Follows (Geophysical Research Letters 2016) recently developed a mechanistic model based on established temperature dependencies for photosynthesis and respiration to explore feedbacks between export efficiency and climate. Heterotrophic growth rates increase more so than phototrophic rates with increasing temperature, which suggests that at higher temperatures, community respiration will increase relative to production, thereby decreasing export efficiency. Although simplistic, the model captures the temperature dependence of export efficiency observations.

Figure: Schematic of the mechanism on which the Cael and Follows (2016) model is based. (a) Photosynthesis (dark grey) and respiration (light grey) respond to temperature differently, yielding (b) a decline in export efficiency at higher temperatures.

More recently, Cael, Bisson, and Follows (Limnology and Oceanography 2017) applied this model to sea surface temperature records and estimated a ~1.5% decline in globally-averaged export efficiency over the past three decades of increasing ocean temperatures as a result of this metabolic mechanism. This ~1.5% decline is equivalent to a reduced ocean sequestration of approximately 100 million fewer tons of carbon annually, comparable to the annual carbon emissions of the United Kingdom. The model provides a framework in which to consider the relationship between climate and ocean carbon export that might also elucidate large-scale (e.g., glacial-interglacial) atmospheric CO₂ changes of the past.

Authors:
B. B. Cael (MIT/WHOI)
Kelsey Bisson (UCSB)
Mick Follows (MIT)

Zooplankton play a key and diverse role in the ocean carbon cycle

Posted by mmaheigan

· Thursday, December 7th, 2017

How does the enormous diversity of zooplankton species, life cycles, size, feeding ecology, and physiology affect their role in ocean food webs and cycling of carbon?

In the 2017 issue of Annual Review of Marine Science, Steinberg and Landry review the fundamental and multifaceted roles that zooplankton play in the cycling and export of carbon in the ocean. Carbon flows through marine pelagic ecosystems are complex due to the diversity of zooplankton consumers and the many trophic levels they occupy in the food web–from single-celled herbivores to large carnivorous jellyfish. Zooplankton also contribute to carbon export processes through a variety of mechanisms (mucous feeding webs, fecal pellets, molts, carcasses, and vertical migrations).

Figure 1. Pathways of cycling and export of carbon by zooplankton in the ocean.

Climate change and other stressors are already affecting zooplankton abundance, distribution, and life cycles, and are predicted to result in widespread changes in zooplankton carbon cycling in the future. These changes will affect both the larger marine food web that depends upon zooplankton for food (fish) or recycled products for growth (primary producers) and the amount of carbon exported into the deep sea–where far from contact with the atmosphere it no longer contributes to global warming.

Authors:

Deborah K. Steinberg, Virginia Institute of Marine Science, The College of William and Mary
Michael R. Landry, Scripps Institution of Oceanography

The changing ocean carbon cycle

Posted by mmaheigan

· Thursday, July 6th, 2017

Since preindustrial times, the ocean has removed from the atmosphere 41% of the carbon emitted by human industrial activities (Figure 1). The globally integrated rate of ocean carbon uptake is increasing in response to rising atmospheric CO₂ levels and is expected to continue this trend for the foreseeable future. However, the inherent uncertainties in ocean surface and interior data associated with ocean carbon uptake processes make it difficult to predict future changes in the ocean carbon sink. In a recent paper, McKinley et al. (2017), review the mechanisms of ocean carbon uptake and its spatiotemporal variability in recent decades. Looking forward, the potential for direct detection of change in the ocean carbon sink, as distinct from interannual variability, is assessed using a climate model large ensemble, a novel approach to studying climate processes with an earth systems model, the “large ensemble.” In a large ensemble, many runs of the same model are done so as to directly distinguish natural variability from long-term trends.

This analysis illustrates that variability in CO₂ flux is large enough to prevent detection of anthropogenic trends in ocean carbon uptake on at least decadal to multi-decadal timescales, depending on location. Earliest detection of trends is most attainable in regions where trends are expected to be largest, such as the Southern Ocean and parts of the North Atlantic and North Pacific. Detection will require sustained observations over many decades, underscoring the importance of traditional ship-based approaches and integration of new autonomous observing platforms as part of a global ocean carbon observing system.

Please see a relevant OCB outreach tool on ocean carbon uptake developed by McKinley and colleagues:
OCB teaching/outreach slide deck Temporal and Spatial Perspectives on the Fate of Anthropogenic Carbon: A Carbon Cycle Slide Deck for Broad Audiences – also download explanatory notes

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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