Archive for fluid dynamics

Physics shed new light on microbial filter-feeding

Posted by mmaheigan 
· Wednesday, September 26th, 2018 

Microbial filter-feeders actively filter water for bacteria-sized prey, but hydrodynamic theory predicts that their filtration rate should be one order of magnitude lower than what they realize.   What is missing in our knowledge and modeling of these key components of aquatic food webs?

In a recent study published in PNAS, Nielsen et al. (2017) used a combination of microscopy observations, particle tracking, and analytical and computational fluid dynamics (CFD) to shed light on the physics of microbial filter-feeding. They found that analytical and computational fluid dynamic estimates agree that the observed filtration rate cannot be realized given the known morphology and flagellum kinematics. The estimates consistently fall one order of magnitude short of observed filtration rates. This led the authors to suggest that their study organism, the choanoflagellate Diaphanoeca grandis, has a so-called ‘flagellar vane’, a sheet-like extension of the flagellum seen in some members of the choanoflagellate sister group, the marine sponges. This structure would fundamentally change the physics of the filtration process, and the authors found that both the analytical and the computational estimates match observed filtration rates when such a structure is included.

Left: Choanoflagellate model morphology showing the protoplast (cell) in orange, the filter comprised of microvilli (black), the lorica and chimney (red) and the flagellum with vane (blue). Right: Experimentally observed near-cell flow field vs. flow field modelled using computational fluid dynamics including a flagellar vane. The filter cross-section is here shown in green. The modelled flow field provides a good match with the observed flow field. Without a flagellar vane, the model flow field is at least an order of magnitude weaker. This leads to the suggestion that a flagellar vane is needed to account for the observed flow field and clearance rate.

 

The new insights allow the authors to generalize about the trade-offs involved in microbial filtering, which is important to our understanding of the microbial loop in planktonic food webs. The results are of even wider interest since choanoflagellates are believed to be the evolutionary ancestors of all multicellular animals, many of which include cells that are fundamentally identical to choanoflagellates (e.g., the simple cuboidal epithelium cells of kidneys). Thus, microscale filtering not only happens in every single drop of seawater, it also happens inside most animals.

Learn more here.

Authors:
Lasse Tor Nielsen (National Institute of Aquatic Resources and Centre for Ocean Life, Technical University of Denmark)
Seyed Saeed Asadzadeh (Department of Mechanical Engineering, Technical University of Denmark)
Julia Dölger (Department of Physics and Centre for Ocean Life, Technical University of Denmark)
Jens H. Walther (Department of Mechanical Engineering, Technical University of Denmark, Denmark and Swiss Federal Institute of Technology Zürich, ETH Zentrum)
Thomas Kiørboe (National Institute of Aquatic Resources and Centre for Ocean Life, Technical University of Denmark)
Anders Andersen (Department of Physics and Centre for Ocean Life, Technical University of Denmark)

Filter by Keyword

abundance acidification africa air-sea interactions alkalinity allometry ammonium AMOC anoxia anoxic Antarctic anthropogenic carbon aragonite saturation arctic arsenic Atlantic Atlantic modeling atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria BATS benthic bgc argo bioavailability biogeochemical cycles biogeochemical models biogeochemistry biological pump biological uptake biophysics bloom blooms blue carbon bottom water boundary layer buffer capacity CaCO3 calcification calcite carbon-climate feedback carbon-sulfur coupling carbon cycle carbon dioxide carbon sequestration Caribbean CCA CCS changing marine ecosystems changing ocean chemistry chemoautotroph chl a chlorophyll circulation climate change CO2 coastal ocean cobalt Coccolithophores community composition conservation cooling effect copepod coral reefs currents cyclone DCM decomposers decomposition deep convection deep ocean deep sea coral deoxygenation depth diagenesis diatoms DIC diel migration dimethylsulfide dissolved inorganic carbon dissolved organic carbon DOC DOM domoic acid dust DVM earth system models eddy Education Ekman transport emissions ENSO enzyme equatorial regions error ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export EXPORTS extreme weather events faecal pellets filter feeders filtration rates fish Fish carbon fisheries floats fluid dynamics fluorescence food webs forams freshening freshwater frontal zone functional role future oceans geochemistry geoengineering GEOTRACES glaciers gliders global carbon budget global warming go-ship grazing greenhouse gas Greenland groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact hydrothermal hypoxia ice age ice cores ice cover industrial onset inverse circulation iron iron fertilization isotopes jellies katabatic winds kelvin waves krill kuroshio land-ocean continuum larvaceans lateral transport lidar ligands light light attenuation mangroves marine heatwave marine snowfall marshes Mediterranean meltwater mesopelagic mesoscale metagenome metals methane microbes microlayer microorganisms microscale microzooplankton midwater mixed layer mixed layers mixotrophy modeling mode water molecular diffusion MPT multi-decade NASA NCP net community production new technology nitrate nitrogen nitrogen fixation nitrous oxide north atlantic north pacific nutricline nutrient budget nutrient cycling nutrient limitation nutrients OA ocean-atmosphere ocean acidification ocean carbon uptake and storage ocean color ocean observatories ODZ oligotrophic omics OMZ open ocean optics organic particles overturning circulation oxygen pacific paleoceanography particle flux pCO2 PDO peat pelagic pH phenology phosphorus photosynthesis physical processes physiology phytoplankton plankton POC polar regions pollutants prediction primary productivity Prochlorococcus proteins pteropods pycnocline radioisotopes remineralization remote sensing residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satell satellite scale seafloor seagrass sea ice sea level rise seasonal patterns seaweed sediments sensors shelf system shells ship-based observations silicate sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST subduction submesoscale subpolar subtropical surface surface ocean Synechococcus teleconnections temperate temperature temporal covariations thermocline thermohaline thorium tidal time-series time of emergence top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport volcano water quality western boundary currents wetlands winter mixing zooplankton

Copyright © 2021 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.