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Building ocean biogeochemistry observing capacity, one float at a time: An update on the Biogeochemical-Argo Program

Posted by mmaheigan

· Thursday, July 5th, 2018

By Ken Johnson (MBARI)

The Biogeochemical-Argo (BGC-Argo) Program is an international effort to develop a global network of biogeochemical sensors on Argo profiling floats that has emerged from over a decade of community discussion and planning. While there is no formal funding for this global program, it is being implemented via a series of international research projects that harness the unique capabilities provided by BGC profiling floats. The U.S. Ocean Carbon and Biogeochemistry (OCB) Program maintains and supports a U.S. BGC-Argo subcommittee as a focal point for U.S. community input on the implementation of the global biogeochemical float array and associated science program development.

Figure 1. Steve Riser deploying a SOCCOM float from the R/V Palmer

About BGC-Argo Floats
BGC-Argo floats can carry a suite of chemical and bio-optical sensors (Figure 1 – Float Schematic). They have enough energy to make about 250 to 300 vertical profiles from 2000 m to the surface. At a cycle time of 10 days, that corresponds to a lifetime near 7 years. The long endurance allows the floats to resolve seasonal to interannual variations in carbon and nutrient cycling throughout the water column. These time scales are difficult to study from ships and ocean interior processes are hard to resolve from satellites. BGC profiling floats extend the capabilities of these traditional observing systems in significant ways.

Figure 2. Images of Navis and APEX floats used in the SOCCOM program. These floats carry oxygen, nitrate, pH, and bio-optical (chlorophyll fluorescence and backscatter) sensors.

All of the data from profiling floats operating as part of the Argo program must be available in real-time with no restrictions on access. The Argo Global Data Assembly centers in France and the USA both provide complete listings of all BGC profiles (argo_bio-profile_index.txt) and access to the data. Extensive documentation of the data processing protocols is available from the Argo Data Management Team. Individual research programs, such as SOCCOM (see below), may also provide direct data access to the observed data along with value added products such as best estimates of pCO₂ derived from pH sensor data.

Regional Deployments
In 2018, it is projected that 127 profiling floats with biogeochemical sensors are will be deployed, including ~40 floats by U.S. projects. Most of the U.S. deployments (30+) will be carried out by the Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) project (Figure 2 – Float Deployment). These floats will carry oxygen, nitrate, pH, chlorophyll fluorescence, and backscatter sensors. As part of the NOAA Tropical Pacific Observing System (TPOS) program, Steve Riser’s group (Univ. Washington) will deploy 3 BGC-Argo floats per year in the equatorial Pacific over the next 4 years. These floats will be equipped with oxygen, pH, bio-optical sensors and Passive Acoustic Listener (PAL) sensors, which provide wind speed estimates at 15-minute intervals while the floats are parked at 1000 m. Wind speed is derived from the noise spectrum of breaking waves. Steve Emerson (Univ. Washington), with NSF support, is also deploying floats equipped with oxygen, nitrate and pH sensors in the equatorial Pacific. With funding from NSF, Andrea Fassbender (MBARI) will deploy two floats at Ocean Station Papa in the northeast Pacific in collaboration with the EXPORTS program. These floats will also carry oxygen, nitrate, pH, and bio-optical sensors.

Nearly 90 BGC floats will be deployed in 2018 by other nations in multiple ocean basins. Much of this effort will focus on the North Pacific and North Atlantic. The sensor load on these floats is somewhat variable. Some will be deployed with only oxygen sensors or bio-optical sensors for chlorophyll fluorescence and particle abundance. Others will carry the full suite of six sensors (oxygen, nitrate, pH, chlorophyll fluorescence, backscatter, and irradiance) that are outlined in the BGC-Argo Implementation Plan (BGC-Argo, 2016). These floats will contribute to the existing array of 305 biogeochemical floats (Figure 3 BGC Argo Map).

Community Activities
In response to the tremendous interest in the scientific community in the capabilities of profiling floats, OCB is sponsoring a Biogeochemical Float Workshop at the University of Washington in Seattle from July 9-13, 2018 to begin the process of transferring this expertise to the broader oceanographic community, bringing together potential users of this technology to discuss biogeochemical profiling float technology, sensors, and data management and begin the process of the intelligent design of future scientific experiments. The workshop will provide participating scientists direct access to the facilities of the Float Laboratory operated by Riser. This workshop builds on a previous OCB workshop Observing Biogeochemical Cycles at Global Scales with Profiling Floats and Gliders (Johnson et al., 2009). BGC-Argo will also have a prominent presence at the 6th Argo Science Workshop (October 22-24, 2018, Tokyo, Japan) and OceanObs19 (September 16-20, 2019, Honolulu, HI).

Figure 3. May 2018 map of the location of BGC-Argo floats that have reported in the previous month and sensor types on these floats. From jcommops.org.

BGC-Argo Publications
Several resources now highlight the capabilities of profiling floats to accomplish scientific observing goals. A web-based bibliography of biogeochemical float papers hosted on the Biogeochemical-Argo website currently includes >100 publications and continues to grow. A special issue of Journal of Geophysical Research: Oceans focused on the SOCCOM program is in progress with 11 papers now available and a dozen more forthcoming. These papers include summaries of the technical capabilities of floats and the biogeochemical sensors, comparisons of float bio-optical data with satellite remote sensing observations, seasonal and interannual assessments of air-sea oxygen flux, under-ice biogeochemistry, carbon export, comparisons of pCO₂ estimated from floats with pH vs. time-series data, and net community production. The connection of float observations with numerical models is a special focus of the program and this is highlighted in several papers, including a description of the Biogeochemical Southern Ocean State Estimate (SOSE), which is a data assimilating BGC model. Results from Observing System Simulation Experiments (OSSEs) used to assess the number of floats needed for large-scale observations are also reported. The BGC-Argo steering committee is developing a community white paper for the OceanObs19 conference in September 2019. BGC-Argo also develops and distributes a community newsletter.

For more information, visit the BGC-Argo website or reach out to the U.S. BGC-Argo Subcommittee.

Feedbacks mitigate the impacts of atmospheric nitrogen deposition in the western North Atlantic

Posted by mmaheigan

· Thursday, April 12th, 2018

How do phytoplankton respond to atmospheric nitrogen deposition in the western North Atlantic, an area downwind of large agricultural and industrial centers? The biogeochemical impacts of this ‘fertilization’ remain unclear, as direct oceanic observations of atmospheric deposition are limited and models often cannot resolve the important processes.

In a recent study, St-Laurent et al. (2017) simulated the biogeochemical impacts of nitrogen deposition on surface waters of the western North Atlantic by combining year-specific deposition rates from the Community Multiscale Air Quality (CMAQ) model and a realistic 3-D biogeochemical model of the waters off the US east coast. Westerly winds from the continent and large fluxes of heat and moisture over the Gulf Stream produce a ‘hotspot’ of wet nitrogen deposition along the path of the current. This nitrogen input increases the local surface primary productivity by up to 30% during the summer. However, the study also identified important processes that mitigate the impact of atmospheric nitrogen deposition in other seasons and regions. Deposition weakens vertical nitrogen gradients in the upper 20 m and thus decreases the upward transport of nitrogen to the surface layer (a negative feedback). Increases in surface phytoplankton concentrations also negatively impact light availability below the surface through shelf-shading.

Atmospheric nitrogen deposition along the US east coast. (Left) Wet deposition of oxidized nitrogen over the Gulf Stream as simulated by the Community Multiscale Air Quality model (average 2004-2008). (Right) Increase in summer surface primary productivity in response to the deposition (average 2004-2008).

These results indicate that atmospheric nitrogen deposition has important impacts on the surface biogeochemistry of the western North Atlantic but that the response is not simply proportional to the deposition. Additional research is necessary to clarify the role played by atmospheric deposition in this region in past and future centuries. While inputs of atmospheric nitrogen associated with power plants and industries have decreased since the passage of the Clean Air Act, recent studies have revealed increasing atmospheric concentrations of reduced nitrogen. Continued coordination between modeling and observing efforts (both on land and over the ocean) are needed to improve our understanding of the impacts of deposition on the biological pump in this region of the Atlantic ocean.

Authors:
Pierre St-Laurent (VIMS, College of William and Mary)
Marjorie A.M. Friedrichs (VIMS, College of William and Mary)
Raymond G. Najjar (Pennsylvania State University)
Doug Martins (FLIR Systems Inc.)
Maria Herrmann (Pennsylvania State University)
Sonya K. Miller (Pennsylvania State University)
John Wilkin (Rutgers University)

Widespread nutrient co-limitation discovered in the South Atlantic

Posted by mmaheigan

· Thursday, March 15th, 2018

Unicellular photosynthetic microbes—phytoplankton—are responsible for virtually all oceanic primary production, which fuels marine food webs and plays a fundamental role in the global carbon cycle. Experiments to date have suggested that the growth of phytoplankton across much of the ocean is limited by either nitrogen or iron. But simultaneously low concentrations of these and other nutrients have been measured over large areas of the open ocean, raising the question: Are phytoplankton communities only limited by a single nutrient?

Authors of a study recently published in Nature tested this by conducting nutrient addition experiments on a GEOTRACES cruise in the nutrient-deficient South Atlantic gyre. Seawater samples were amended with nitrogen, iron, and cobalt both individually and in various combinations. Concurrent nitrogen and iron addition stimulated increased phytoplankton growth, yielding a ~40-fold increase in chlorophyll a. Supplementary addition of cobalt or cobalt-containing vitamin B₁₂ further enhanced phytoplankton growth in several experiments.

Experiments conducted throughout the southeast Atlantic GEOTRACES GA08 cruise transect (left panel) demonstrated that nitrogen and iron had to be added to significantly stimulate phytoplankton growth (right panel). Supplementary addition of cobalt (or cobalt-containing vitamin B12) stimulated significant additional growth.

In addition to co-limited sites, the study identified ‘singly’ and ‘serially’ limited sites. These limitation regimes could be predicted by the measured ambient seawater nutrient concentrations, demonstrating the potential for using nutrient datasets to make confident predictions about limitation at larger spatial scales, an approach that is being more widely used in programmes like GEOTRACES,.

Finally, a complex, state-of-the-art biogeochemical ocean model suggested a much smaller extent of nutrient co-limitation than the experiments indicated. Authors attributed this to relatively restricted microbial and nutrient diversity in the model. These findings have implications for how such models are constructed if they are to represent nutrient co-limitation in the ocean and accurately project changes in ocean productivity in the future.

Authors:
Thomas J. Browning (GEOMAR)
Eric P. Achterberg (GEOMAR)
Insa Rapp (GEOMAR)
Anja Engel (GEOMAR)
Erin M. Bertrand (Dalhousie University)
Alessandro Tagliabue (University of Liverpool)
Mark Moore (University of Southampton)

NASA Arctic-COLORS scoping study report

Posted by mmaheigan

· Monday, March 5th, 2018

Arctic-COLORS (Arctic-COastal Land Ocean inteRactionS): A Science Plan for a NASA Field Campaign in the Coastal Arctic

View or download the PDF

Executive Summary
Over the past century, average Arctic surface air temperatures have increased at almost twice the global average rate and this rapid warming trend is expected to continue over the next century. Consequently, Arctic ecosystems have become an area of intense research focus, with specific emphasis on identifying compounding and exacerbating factors that can be critically important to our understanding and modeling of key biogeochemical processes. Short-term climate forcings and feedbacks that potentially accelerate local warming and environmental change in the Arctic are also increasingly affecting society in a variety of ways: from erosion of Arctic coastlines, to modifications of wildlife habitat and ecosystems that affect subsistence opportunities, to changes in transportation infrastructure, mineral development, and other ecological, socio-cultural, and economic uses of coastal ecosystem services. Arctic climate change has global implications, contributing to global sea level rise and affecting heat-flux changes, atmospheric circulation, and ocean circulation and dynamics beyond the Arctic region. The realization that changes within the Arctic have profound impacts on ecosystems and human populations across the globe has motivated greater attention by researchers, funding agencies, governmental policy makers, and non-governmental organizations. Recognizing the challenges associated with climate change and the emergence of a new Arctic environment, the White House released The National Strategy for the Arctic Region in May 2013. Included among the main principles highlighted in this strategy is: “Making decisions using the best available information by promptly sharing – nationally and internationally – the most current understanding and forecasts based on up-to-date science and traditional knowledge”. Yet major gaps remain in our understanding of the feedbacks, response, and resilience of coastal Arctic ecosystems, communities, and natural resources to current and future pressures. The biogeochemistry of the Arctic nearshore coastal zone, a vulnerable and complex contiguous landscape of lakes, streams, wetlands, permafrost, rivers, lagoons, estuaries and coastal seas, all modified by snow and ice, remains poorly understood.

To improve our mechanistic understanding and prediction capabilities of land-ocean interactions in the rapidly changing Arctic coastal zone, our team proposed a Field Campaign Scoping Study called Arctic-COLORS (Arctic-COastal Land Ocean inteRactionS) to NASA’s Ocean Biology and Biogeochemistry (OBB) Program. The goal of the project was to develop a scoping study report for NASA that describes and justifies the science imperative and design of an integrative, interdisciplinary oceanographic field campaign program that addresses high priority science questions related to land-ocean interactions in the Arctic. During the preparation of the scoping study report, our team consulted with the community to refine the high priority science questions for Arctic-COLORS, determine the study domain and research phases for the field campaign, and explore opportunities for linking to other field activities in the Arctic. Addressing the campaign’s objectives will require multidisciplinary expertise, a coordinated engagement of regional authorities and local communities, and a combination of field studies, remotely sensed observations from various platforms (shipboard, buoys, gliders, ground-based, airborne, satellite, for example), process studies, and numerical modeling. This scoping study report does not describe a comprehensive field campaign activity in detail, but rather sketches out key aspects of a field campaign program including the study region, sampling approaches, critical measurements, remote sensing assets, and modeling activities necessary to address the science objectives.

What is Arctic-COLORS? Arctic-COLORS is a proposed NASA-funded field campaign designed to quantify the response of the Arctic coastal environment to global change and anthropogenic disturbances – an imperative for developing mitigation and adaptation strategies for the region. The Arctic-COLORS field campaign is unprecedented, as it represents the first attempt to study the nearshore coastal Arctic (from riverine deltas and estuaries out to the coastal sea) as an integrated land-ocean-atmosphere-biosphere system.

The overarching objective of Arctic-COLORS is to determine present and future impacts of terrigenous, atmospheric, and oceanic fluxes on the biogeochemistry, ecology and ecosystem services of the Arctic coastal zone in the context of environmental (short-term) and climate (long-term) change. This focus on land-ocean interactions in the nearshore coastal zone is a unique contribution of Arctic-COLORS compared to other NASA field campaigns in polar regions. The science of our field campaign will focus on five key science questions:

1. How and where are materials from the land, atmosphere, and ocean transformed within the land-ocean continuum of the Arctic coastal zone?
2. How does thawing of Arctic permafrost—either directly through coastal erosion or indirectly through changing freshwater loads from upstream thaw—translate to changes in coastal ecology and biogeochemistry?
3. How do changes in snow/ice conditions and coastal circulation influence Arctic coastal ecology and biogeochemistry?
4. How do changes in fluxes of materials, heat, and buoyancy from the land, atmosphere, and ocean influence Arctic coastal ecology and biogeochemistry?
5. How do changing environmental (short-term) and climate (long-term) conditions alter the Arctic coastal zone’s availability and use of ecosystem services?

Scoping Study Principal Investigators and Primary Authors (alphabetical order):
Antonio Mannino, Carlos Del Castillo, Marjorie Friedrichs, Peter Hernes, Patricia Matrai, Joseph Salisbury, Maria Tzortziou

Collaborators and Co-Authors:
Matthew Alkire, Marcel Babin, Simon Bélanger, Emmanuel Boss, Eddy Carmack, Lee Cooper, Susanne Craig, Jerome Fiechter, Joaquim Goes, Peter Griffith,
Dan Hodkinson, Christopher Hostetler, David Kirchman, Diane Lavoie, Bonnie Light, James McClelland, Donald McLennan, Irina Overeem, Christopher Polashenski, Michael Rawlins, Rick Reynolds, Rachael Sipler, Michael Steele, Robert Striegl, James Syvitski, Suzanne Tank, Muyin Wang, Tom Weingartner

Increased temperatures suggest reduced capacity for carbon

Posted by mmaheigan

· Thursday, January 18th, 2018

The ocean’s biological pump works to draw down atmospheric carbon dioxide (CO₂) by exporting carbon from the surface ocean. This process is less efficient at higher temperatures, implying a possible climate feedback. Recent work by Cael et al. provides an explanation of why this feedback occurs and an estimate of its severity.

In a highly simplified view, carbon export depends on the balance between two temperature-dependent processes: 1) The autotrophic production and 2) the heterotrophic respiration of organic carbon. Cael and Follows (Geophysical Research Letters 2016) recently developed a mechanistic model based on established temperature dependencies for photosynthesis and respiration to explore feedbacks between export efficiency and climate. Heterotrophic growth rates increase more so than phototrophic rates with increasing temperature, which suggests that at higher temperatures, community respiration will increase relative to production, thereby decreasing export efficiency. Although simplistic, the model captures the temperature dependence of export efficiency observations.

Figure: Schematic of the mechanism on which the Cael and Follows (2016) model is based. (a) Photosynthesis (dark grey) and respiration (light grey) respond to temperature differently, yielding (b) a decline in export efficiency at higher temperatures.

More recently, Cael, Bisson, and Follows (Limnology and Oceanography 2017) applied this model to sea surface temperature records and estimated a ~1.5% decline in globally-averaged export efficiency over the past three decades of increasing ocean temperatures as a result of this metabolic mechanism. This ~1.5% decline is equivalent to a reduced ocean sequestration of approximately 100 million fewer tons of carbon annually, comparable to the annual carbon emissions of the United Kingdom. The model provides a framework in which to consider the relationship between climate and ocean carbon export that might also elucidate large-scale (e.g., glacial-interglacial) atmospheric CO₂ changes of the past.

Authors:
B. B. Cael (MIT/WHOI)
Kelsey Bisson (UCSB)
Mick Follows (MIT)

WBC Series: Fine-scale biophysical controls on nutrient supply, phytoplankton community structure, and carbon export in western boundary current regions

Posted by mmaheigan

· Friday, November 10th, 2017

Sophie Clayton¹, Peter Gaube¹, Takeyoshi Nagai², Melissa M. Omand³, Makio Honda⁴

1. University of Washington
2. Tokyo University of Marine Science and Technology, Japan
3. University of Rhode Island
4. Japan Agency for Marine-Earth Science and Technology, Japan

Western boundary current (WBC) regions are largely thought to be hotspots of productivity, biodiversity, and carbon export. The distinct biogeographical characteristics of the biomes bordering WBC fronts change abruptly from stable, subtropical waters to highly seasonal subpolar gyres. The large-scale convergence of these distinct water masses brings different ecosystems into close proximity allowing for cross-frontal exchange. Although the strong horizontal density gradient maintains environmental gradients, instabilities lead to the formation of meanders, filaments, and rings that mediate the exchange of physical, chemical, and ecological properties across the front. WBC systems also act as large-scale conduits, transporting tracers over thousands of kilometers. The combination of these local perturbations and the short advective timescale for water parcels passing through the system is likely the driver of the enhanced local productivity, biodiversity, and carbon export observed in these regions. Our understanding of biophysical interactions in the WBCs, however, is limited by the paucity of in situ observations, which concurrently resolve chemical, biological, and physical properties at fine spatial and temporal scales (1-10 km, days). Here, we review the current state of knowledge of fine-scale biophysical interactions in WBC systems, focusing on their impacts on nutrient supply, phytoplankton community structure, and carbon export. We identify knowledge gaps and discuss how advances in observational platforms, sensors, and models will help to improve our understanding of physical-biological-ecological interactions across scales in WBCs.

Mechanisms of nutrient supply

Nutrient supply to the euphotic zone occurs over a range of scales in WBC systems. The Gulf Stream and the Kuroshio have been shown to act as large-scale subsurface nutrient streams, supporting large lateral transports of nutrients within the upper thermocline (Pelegrí and Csanady 1991; Pelegrí et al. 1996; Guo et al. 2012; Guo et al. 2013). The WBCs are effective in transporting nutrients in part because of their strong volume transports, but also because they support anomalously high subsurface nutrient concentrations compared to adjacent waters along the same isopycnals (Pelegrí and Csanady 1991; Nagai and Clayton 2017; Komatsu and Hiroe pers. comm.). It is likely that the Gulf Stream and Kuroshio nutrient streams originate near the southern boundary of the subtropical gyres (Nagai et al. 2015a). Recent studies have suggested that nutrients in the Gulf Stream originate even farther south in the Southern Ocean (Williams et al. 2006; Sarmiento et al. 2004). These subsurface nutrients can then be supplied to the surface through a range of vertical supply mechanisms, fueling productivity in the WBC regions.

We currently lack a mechanistic understanding of how elevated nutrient levels in these “nutrient streams” are maintained, since mesoscale stirring should act to homogenize them. While it is well understood that the deepening of the mixed layer toward subpolar regions (along nutrient stream pathways) can drive a large-scale induction of nutrients to the surface layer (Williams et al., 2006), the detailed mechanisms driving the vertical supply of these nutrients to the surface layer at synoptic time and space scales remain unclear. Recent studies focusing on the oceanic (sub)mesoscale (spatial scales of 1-100 km) are starting to reveal mechanisms driving intermittent vertical exchange of nutrients and organisms in and out of the euphotic zone.

Recent surveys that resolved micro-scale mixing processes in the Kuroshio Extension and the Gulf Stream have reported elevated turbulence in the thermocline, likely a result of near-inertial internal waves (Nagai et al. 2009, 2012, 2015b; Kaneko et al. 2012, Inoue et al. 2010). In the Tokara Strait, upstream of the Kuroshio Extension, where the geostrophic flow passes shallow topography, pronounced turbulent mixing oriented along coherent banded layers below the thermocline was observed and linked to high-vertical wavenumber near-inertial internal waves (Nagai et al. 2017; Tsutsumi et al. 2017). Within the Kuroshio Extension, measurements made by autonomous microstructure floats have revealed vigorous microscale temperature dissipation within and below the Kuroshio thermocline over at least 300 km following the main stream, which was attributed to active double-diffusive convection (Nagai et al. 2015c). Within the surface mixed layer, recent studies have shown that downfront winds over the Kuroshio Extension generate strong turbulent mixing (D’Asaro et al. 2011; Nagai et al. 2012). The influence of fine-scale vertical mixing on nutrient supply was observed during a high-spatial resolution biogeochemical survey across the Kuroshio Extension front, revealing fine-scale “tongues” of elevated nitrate arranged along isopycnals (Figure 1, Clayton et al. 2014). Subsequent modeling work has shown that these nutrient tongues are ubiquitous features along the southern flank of the Kuroshio Extension front, formed by submesoscale surface mixed layer fronts (Nagai and Clayton 2017).

Microscale turbulence, double-diffusive convection, and submesoscale stirring are all processes associated with meso- and submesoscale fronts. The results from the studies mentioned above support the hypothesis that WBCs are an efficient conduit for transporting nutrients, not only over large scales but also more locally on fine scales, as isopycnal transporters, lateral stirrers, and diapycnal suppliers. It is the sum of these transport processes that ultimately fuels the elevated primary production observed in these regions.

Figure 1. Vertical sections of nitrate (μM) observed across the Kuroshio Extension in October 2009. The panels are organized such that they line up with respect to the density structure of the Kuroshio Extension Front. Cyan contour lines show the mixed layer depth (taken from Nagai and Clayton 2017).

Phytoplankton biomass, community structure, and dynamics

WBCs separate regions with markedly different biogeochemical and ecological characteristics. Subpolar gyres are productive, highly seasonal, tend to support ecosystems with higher phytoplankton biomass, and can be dominated by large phytoplankton and zooplankton taxa. Conversely, subtropical gyres are mostly oligotrophic, support lower photoautotrophic biomass, and are not characterized by a strong seasonal cycle. In turn, these subtropical regions tend to support ecosystems that comprise smaller cells and a tightly coupled microbial loop. As boundaries to these diverse regions, WBCs are the main conduit linking the equatorial and polar oceans and their resident plankton communities. Within the frontal zones, mesoscale dynamics act to stir water masses together and can transport ecosystems across the WBC into regions of markedly different physical and biological characteristics. Furthermore, mesoscale eddies can modulate vertical fluxes via the displacement of ispycnals during eddy intensification or eddy-induced Ekman pumping, or generating submesoscale patches of vertical exchange. At these smaller scales, vigorous vertical circulations ¾ with magnitudes reaching 100 m/day ¾ can fertilize the euphotic zone or transport phytoplankton out of the surface layer.

Numerous studies have hypothesized that the combination of large-scale transport, mesoscale stirring and transport, and submesoscale nutrient input leads to both high biodiversity and high population densities. Using remote sensing data, D’Ovidio et al. (2010) showed that mesoscale stirring in the Brazil-Malvinas Confluence Zone brings together communities from very different source regions, driving locally enhanced biodiversity. In a numerical model, in which physical and biological processes can be explicitly separated and quantified, Clayton et al. (2013) showed that high modeled biodiversity in the WBCs was due to a combination of transport and local nutrient enhancements. And finally, in situ taxonomic surveys crossing the Brazil-Malvinas Confluence (Cermeno et al. 2008) and the Kuroshio Extension (Honjo and Okada 1974; Clayton et al, 2017) showed both enhanced biomass and biodiversity associated with the WBC fronts. Beyond these local enhancements, WBCs might play a larger role in setting regional biogeography. Sugie and Suzuki (2017) found a mixture of temperate and subpolar diatom species in the Kuroshio Extension, suggesting that the boundary current might play a key role in setting downstream diatom diversity.

However tantalizing these results are, they remain relatively inconclusive, in part because of their relatively small temporal and spatial scales. Extending existing approaches for assessing phytoplankton community structure, leveraging emerging ‘omics and continuous sampling techniques, larger regions might be surveyed at high taxonomic and spatial resolution. Combining genomic and transcriptomic observations would provide measures of both organism abundance and activity (Hunt et al. 2013), as well as the potential to better define the relative roles of growth and loss processes. With genetically resolved data and appropriate survey strategies, it will be possible to conclusively determine the presence of these biodiversity hotspots. A better characterization and deeper understanding of these regions will provide insight into the long-term and large-scale biodiversity, stability, and function of the global planktonic ecosystem.

Organic carbon export via physical and biological processes

Export, the removal of fixed carbon from the surface ocean, is driven by gravitational particle sinking, active transport, and (sub)mesoscale processes such as eddy-driven subduction. While evidence suggests that WBCs are likely hot spots of biological (Siegel et al. 2014; Honda et al. 2017a) and physical (Omand et al. 2015) export fluxes out of the euphotic zone, only a small handful of studies have explored this. Recent results from sediment trap studies at the Kuroshio Extension Observatory (KEO) mooring, located just south of the Kuroshio Extension, suggest that there is a link between the passage of mesoscale eddies and carbon export (Honda et al. 2017b). They observed that high export events at 5000 m lagged behind the passage of negative (cyclonic) sea surface height anomalies (SSHA) at the mooring by one to two months (Figure 2). In other regions, underway measurements (Stanley et al. 2010) and optical sensors on autonomous platforms (Briggs et al. 2011; Estapa et al. 2013; Estapa et al. 2015; Bishop et al. 2016) have revealed large episodicity in export proxies over timescales of hours to days and spatial scales of 1-10 km.

Figure 2. Time series of ocean temperature in the upper ~550 m (less than 550 dbar) at station KEO between July 2014 and June 2016. The daily data shown in the figure are available on the KEO database. White contour lines show the temporal variability in the daily satellite-based sea surface height anomaly (SSHA). White open bars show the total mass flux (TMF) observed by the time series sediment trap at 5000 m (based on a figure in Honda et al. 2017b).

Another avenue of carbon export from the surface ocean results from grazing and vertical migration. Vertically migrating zooplankton feed near the surface in the dark and evade predation at depth during the day. Fronts generated by WBCs produce gradients in zooplankton communities, both in terms of grazer biomass and species compositions (e.g., Wiebe and Flierl, 1983), and influence the extent and magnitude of diel vertical migrations. Submesoscale variability in zooplankton abundance can be observed readily in echograms collected by active acoustic sensors, but submesoscale variability in zooplankton community structure and dynamics remains difficult to measure. Thus, the nature of this variability remains largely unknown.

Future research directions

Building a better understanding of how physical and biogeochemical dynamics in WBC regions interact relies on observing these systems at the appropriate scales. This is particularly challenging because of the range of scales at play in these systems and the limitation of existing in situ and remote observing platforms and techniques. As has been outlined above, the ecological and biogeochemical environment of WBCs is the result of long range transport from the flanking subtropical and subpolar gyres, as well as local modification by meso- and submesocale physical dynamics in these frontal systems.

Another challenge in disentangling the relationships between physical and biogeochemical processes in WBCs is the difficulty in measuring rates rather than standing stocks. In such dynamic systems, lags in biological responses mean that the changes in standing stocks may not be collocated with the physical process forcing them. Small-scale lateral stirring spatially and temporally decouples net community production and export while secondary circulations contribute to vertical transport. As much as possible, future process studies should include approaches that can explicitly quantify biological rates and physical transport pathways. New platforms are beginning to fill these observational gaps: BGC-Argo floats, autonomous platforms (e.g., Saildrone), high-frequency underway measurements, and continuous cytometers (including imaging cytometers) are all capable of generating high-spatial resolution datasets of biological and chemical properties over large regions. Gliders and profiling platforms (e.g., WireWalker) are making it possible to measure vertical profiles of biogeochemical properties at high frequency. Operating within a Lagrangian framework, while resolving lateral gradients of physical and biogeochemical tracers with ships or autonomous vehicles, may someday allow us to quantitatively partition the observed small-scale variability in biogeochemical tracers between that attributable to biological or physical processes.

References

Bishop, J. K. B., M. B. Fong, and T. J. Wood, 2016: Robotic observations of high wintertime carbon export in California coastal waters. Biogeosci., 13, 3109-3129, doi:10.5194/bg-13-3109- 2016.

Briggs, N., M. J. Petty, I. Cetinic, I., C. Lee, E. A. Dasaro, A. M. Gray, and E. Rehm, 2011: High-resolution observations of aggregate flux during a subpolar North Atlantic spring bloom. Deep-Sea Res. I, 58, 10311039, doi:10.1016/j.dsr.2011.07.007.

Cermeno, P., S. Dutkiewicz, R. P. Harris, M. Follows, O. Schofield, and P. G. Falkowski, 2008: The role of nutricline depth in regulating the ocean carbon cycle. Proc. Natl. Acad. Sci., 105, 20344-20349. doi:10.1073/pnas.0811302106.

Clayton, S., S. Dutkiewicz, O. Jahn, and M. J. Follows, 2013: Dispersal, eddies, and the diversity of marine phytoplankton. Limn. Ocean. Fluids Env., 3, 182-197. doi:10.1215/21573689-2373515.

Clayton, S., T. Nagai, and M. J. Follows, 2014: Fine scale phytoplankton community structure across the Kuroshio Front. J. Plankton Res., 36, 1017-1030. doi:10.1093/plankt/fbu020.

Clayton, S., Y.-C. Lin, M. J. Follows, and A. Z. Worden, 2017: Co-existence of distinct Ostreococcus ecotypes at an oceanic front. Limn. Ocean.. 62, 75-88, doi:10.1002/lno.10373.

D’Asaro, E., C. Lee, L. Rainville, L. Harcourt, and L. Thomas, 2011: Enhanced turbulence and energy dissipation at ocean fronts. Science, 332, 318–322, doi: 10.1126/science.1201515.

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Phytoplankton increase projected for the Ross Sea in response to climate change

Posted by mmaheigan

· Thursday, October 26th, 2017

How will phytoplankton respond to climate changes over the next century in the Ross Sea, the most productive coastal waters of Antarctica? Model projections of physical conditions suggest substantial environmental changes in this region, but associated impacts on Ross Sea biology, specifically phytoplankton, remain unclear.

In a recent study, Kaufman et al (2017) generated and analyzed model scenarios for the mid- and late-21^st century using a combination of a biogeochemical model, hydrodynamic simulations forced by a global climate projection, and new data from autonomous gliders. These scenarios indicate increases in the production of phytoplankton in the Ross Sea and increases in the downward flux of carbon in response to environmental changes over the next century. Modeled responses of the different phytoplankton groups to shoaling mixed layer depths shift the biomass composition more towards diatoms by the mid 21^st century. While diatom biomass remains relatively constant in the second half of the 21^st century, the haptophyte Phaeocystis antarctica biomass increases as a result of earlier seasonal sea ice melt, allowing earlier availability of low light, in which P. antarctica thrive.

Modeled climate scenarios for the 21st century project phytoplankton composition changes and increases in primary production and carbon export flux, primarily as a result of shoaling mixed layer depths and earlier available low light.

The projected responses of phytoplankton composition, production, and carbon export to climate-related changes can have broad impacts on food web functioning and nutrient cycling, with wide-ranging potential effects as local deep waters are transported out from the Ross Sea continental shelf. Future changes to this ecosystem have taken on a new relevance as the Ross Sea became home this year to the world’s largest Marine Protected Area, designed to protect critical habitat for highly valued species that rely on the Ross Sea food web. Continued coordination between modeling and autonomous observing efforts is needed to provide vital data for global ocean assessments and to improve our understanding of ecosystem dynamics and climate change impacts in this sensitive and important region.

For other relevant work on observing phytoplankton characteristics in the Ross Sea using gliders, please see: https://doi.org/10.1016/j.dsr.2014.06.011.

And for assimilation of bio-optical glider data in the Ross Sea please see: https://doi.org/10.5194/bg-2017-258.

Authors:
Daniel E. Kaufman (VIMS, College of William and Mary)
Marjorie A. M. Friedrichs (VIMS, College of William and Mary)
Walker O. Smith Jr. (VIMS, College of William and Mary)
Eileen E. Hofmann (CCPO, Old Dominion University)
Michael S. Dinniman (CCPO, Old Dominion University)
John C. P. Hemmings (Wessex Environmental Associates; now at the UK Met Office)

Arctic surface waters release methane but also absorb 2,000 times the CO2 for a net cooling effect

Posted by mmaheigan

· Thursday, September 28th, 2017

A recent study by Pohlman et al. published in PNAS showed that ocean waters near the surface of the Arctic Ocean absorbed 2,000 times more carbon dioxide (CO₂) from the atmosphere than the amount of methane released into the atmosphere from the same waters. The study was conducted near Norway’s Svalbard Islands, which overly numerous seafloor methane seeps.

Methane is a more potent greenhouse gas than CO₂, but the removal of CO₂from the atmosphere where the study was conducted more than offset the potential warming effect of the observed methane emissions. During the study, scientists continuously measured the concentrations of methane and CO₂ in near-surface waters and in the air just above the ocean surface. The measurements were taken over methane seeps fields at water depths ranging from 260 to 8530 feet (80 to 2600 meters).

Figure 1. Ocean waters overlying shallow-water methane seeps (white dots) offshore from the Svalbard Islands absorb substantially more atmospheric carbon dioxide than the methane that they emit to the atmosphere. Colors indicate the strength of the negative greenhouse warming potential associated with carbon dioxide influx to these surface waters relative to the positive greenhouse warming potential associated with the methane emissions. Gray shiptracks have background values for the relative greenhouse warming potential.

Analysis of the data confirmed that methane was entering the atmosphere above the shallowest (water depth of 260-295 feet or 80-90 meters) Svalbard margin seeps. The data also showed that significant amounts of CO₂ were being absorbed by the waters near the ocean surface, and that the cooling effect resulting from CO₂ uptake is up to 230 times greater than the warming effect expected from the methane emitted.

Most previous studies have focused only on the sea-air flux of methane overlying seafloor seep sites and have not accounted for the drawdown of CO₂that could offset some of the atmospheric warming potential of the methane. Phytoplankton appeared to be more active in the near-surface waters overlying the seafloor methane seeps, which would explain why so much carbon dioxide was being absorbed. Physical and biogeochemical measurements of near-surface waters overlying the seafloor methane seeps showed strong evidence of upwelling of cold, nutrient-rich waters from depth, stimulating phytoplankton activity and increasing CO₂ drawdown. This study was the first to document this CO₂ drawdown mechanism in a methane source region.

“If what we observed near Svalbard occurs more broadly at similar locations around the world, it could mean that methane seeps have a net cooling effect on climate, not a warming effect as we previously thought,” said USGS biogeochemist John Pohlman, the paper’s lead author. “We are looking forward to testing the hypothesis that shallow-water methane seeps are net greenhouse gas sinks in other locations.”

Authors:
John W. Pohlman (USGS Woods Hole Coastal & Marine Science Center)
Jens Greinert (GEOMAR, Univ. of Tromsø, Royal Netherlands Institute for Sea Research)
Carolyn Ruppel (USGS Woods Hole Coastal & Marine Science Center)
Anna Silyakova (Univ. of Tromsø)
Lisa Vielstädte (GEOMAR)
Michael Casso (USGS Woods Hole Coastal & Marine Science Center)
Jürgen Mienert (Univ. of Tromsø)
Stefan Bünz (Univ. of Tromsø)

Tiny marine animals strongly influence the carbon cycle

Posted by mmaheigan

· Thursday, August 31st, 2017

What controls the amount of organic carbon entering the deep ocean? In the sunlit layer of the ocean, phytoplankton transform inorganic carbon to organic carbon via a process called photosynthesis. As these particulate forms of organic carbon stick together, they become dense enough to sink out of the sunlit layer, transferring large quantities of organic carbon to the deep ocean and out of contact with the atmosphere.

However, all is not still in the dark ocean. Microbial organisms such as bacteria, and zooplankton consume the sinking, carbon-rich particles and convert the organic carbon back to its original inorganic form. Depending on how deep this occurs, the carbon can be physically mixed back up into the surface layers for exchange with the atmosphere or repeat consumption by phytoplankton. In a recent study published in Biogeosciences, researchers used field data and an ecosystem model in three very different oceanic regions to show that zooplankton are extremely important in determining how much carbon reaches the deep ocean.

Figure 1. Particle export and transfer efficiency to the deep ocean in the Southern Ocean (SO, blue circles), North Atlantic Porcupine Abyssal Plain site (PAP, red squares) and the Equatorial Tropical North Pacific (ETNP, orange triangles) oxygen minimum zone. a) particle export efficiency of fast sinking particles (Fast PEeff) against primary production on a Log10 scale. b) transfer efficiency of particles to the deep ocean expressed as Martin’s b (high b = low efficiency). Error bars in b) are standard error of the mean for observed particles, error too small in model to be seen on this plot.

In the Southern Ocean (SO), zooplankton graze on phytoplankton and produce rapidly sinking fecal pellets, resulting in an inverse relationship between particle export and primary production (Fig. 1a). In the North Atlantic (NA), the efficiency with which particles are transferred to the deep ocean is comparable to that of the Southern Ocean, suggesting similar processes apply; but in both regions, there is a large discrepancy between the field data and the ecosystem model (Fig. 1b), which poorly represents particle processing by zooplankton. Conversely, much better data-model matches are observed in the equatorial Pacific, where lower oxygen concentrations mean fewer zooplankton; this reduces the potential for zooplankton-particle interactions that reduce particle size and density, resulting in a lower transfer efficiency.

This result suggests that mismatches between the data and model in the SO and NA may be due to the lack of zooplankton-particle parameterizations in the model, highlighting the potential importance of zooplankton in regulating carbon export and storage in the deep ocean. Zooplankton parameterizations in ecosystem models must be enhanced by including zooplankton fragmentation of particles as well as consumption. Large field programs such as EXPORTS could help constrain these parameterisation by collecting data on zooplankton-particle interaction rates. This will improve our model estimates of carbon export and our ability to predict future changes in the biological carbon pump. This is especially important in the face of climate-driven changes in zooplankton populations (e.g. oxygen minimum zone (OMZ) expansion) and associated implications for ocean carbon storage and atmospheric carbon dioxide levels.

Authors:
Emma L. Cavan (University of Tasmania)
Stephanie A. Henson (National Oceanography Centre, Southampton)
Anna Belcher (University of Southampton)
Richard Sanders (National Oceanography Centre, Southampton)

Phytoplankton can actively diversify their migration strategy in response to turbulent cues

Posted by mmaheigan

· Thursday, August 17th, 2017

Turbulence is known to be a primary determinant of plankton fitness and succession. However, open questions remain about whether phytoplankton can actively respond to turbulence and, if so, how rapidly they can adapt to it. Recent experiments have revealed that phytoplankton can behaviorally respond to turbulent cues with a rapid change in shape, and this response occurs over a few minutes. This challenges a fundamental paradigm in oceanography that phytoplankton are passively at the mercy of turbulence.

Phytoplankton are photosynthetic microorganisms that form the base of most aquatic food webs, impact global biogeochemical cycles, and produce half of the world’s oxygen. Many species of phytoplankton are motile and migrate in response to gravity and light levels: Upward toward light during the day to photosynthesize and downward at night toward higher nutrient concentrations. Disruption of this diurnal migratory strategy is an important contributor to the succession between motile and non-motile species when conditions become more turbulent. However, this classical view neglects the possibility that motile species can actively respond in an effort to avoid layers of strong turbulence. A recent study by Sengupta, Carrara and Stocker, published in Nature has shown that some raphidophyte and dinoflagellate phytoplankton can actively diversify their migratory strategy in response to hydrodynamic cues characteristic of overturning by the smallest turbulent eddies in the ocean. Laboratory experiments in which cells experienced repeated overturning with timescales and statistics representative of ocean turbulence revealed that over timescales as short as ten minutes, an upward-swimming population split into two subpopulations, one swimming upward and one swimming downward. Quantitative morphological analysis of the harmful algal bloom-forming raphidophyte Heterosigma akashiwo revealed that this behavior was accompanied by a change in cell shape, wherein the cells that changed their swimming direction did so by going from an asymmetric pear shape to a more symmetric egg shape. A model of cell mechanics showed that the magnitude of this shift was minute, yet sufficient to invert the cells’ preferential swimming direction. The results highlight the advanced level of control that phytoplankton have on their migratory behavior.

Understanding how fluctuations in the oceans’ turbulence landscape impacts phytoplankton is of fundamental importance, especially for predicting species succession and community structure given projected climate-driven changes in temperature, winds, and upper ocean structure.

An upward-swimming phytoplankton population splits into upward- and downward-swimming sub-populations when exposed to turbulent eddies, due to a subtle change in cell shape. Illustration by: A. Sengupta, G. Gorick, F. Carrara and R. Stocker

This work was co-funded by a Human Frontier Science Program Cross Disciplinary Fellowship (LT000993/2014-C to A.S.), a Swiss National Science Foundation Early Postdoc Mobility Fellowship (to F.C.), and a Gordon and Betty Moore Marine Microbial Initiative Investigator Award (GBMF 3783 to R.S.)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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