Archive for calcification

How do coccolithophores survive the darkness?

Posted by mmaheigan 
· Friday, April 1st, 2022 

Coccolithophores have survived several major extinction events over geologic time. The most significant was the asteroid impact at the K/T boundary, followed by months of darkness. Additionally, coccolithophores regularly reside in the twilight zone, just beyond the reach of sunlight. A paper recently published in the New Phytologist addresses how these photosynthetic algae can persist and grow, albeit slowly, in darkness using osmotrophy.

The authors discovered that the osmotrophic uptake of certain types of dissolved organic carbon (DOC) can support survival in low light. They completed a 30-day darkness experiment to determine how the concentration of several DOC compounds affects growth. The coccolithophore species Cruciplacolithus neohelis growth rate increased with the increasing concentration of dissolved organic compounds. They also examined the kinetics of short-term uptake of radiolabeled DOC compounds and found that the uptake rate generally showed Michaelis-Menten-like saturation kinetics. All radiolabeled DOC compounds were incorporated into the POC fraction, but surprisingly also into the particulate inorganic carbon (PIC) fraction (i.e., calcite coccoliths).

These results suggest that osmotrophic uptake in coccolithophores may be significant enough to be included in carbon cycle models, especially if they can simultaneously take up a wide range of organic compounds. Surprisingly, we detected 14C-DOC in the PIC fraction after only 24 hours. This remarkably rapid incorporation is most likely due to the respiration of radiolabeled DOC into dissolved inorganic carbon (DIC), subsequently used by coccolithophores for calcification. These results have implications for the biological carbon pump and alkalinity pump paradigms, as we confirmed that both POC and PIC originate from DOC on short time scales.

 

An autonomous approach to monitoring coral reef health

Posted by mmaheigan 
· Thursday, July 20th, 2017 

Coral reefs are diverse, productive ecosystems that are highly vulnerable to changing ocean conditions such as acidification and warming. Coral reef metabolism—in particular the fundamental ecosystem properties of net community production (NCP; the balance of photosynthesis and respiration) and net community calcification (NCC; the balance of calcification and dissolution)—has been proposed as a proxy for reef health. NCC is of particular interest, since ocean acidification is expected to have detrimental effects on reef calcification.

Traditionally, these metabolic rates are quantified through laborious methods that involve discrete sampling, which, due to a limited number of observations, often fails to characterize natural variability on time scales of minutes to days. In a recent paper in JGR, Takeshita et al. (2016) presented the Benthic Ecosystem and Acidification Measurement System (BEAMS), a fully autonomous system that simultaneously measures NCP and NCC at 15-minute intervals over a period of weeks. BEAMS utilizes the gradient flux method to quantify benthic metabolic rates by measuring chemical (pH and O2) and velocity gradients in the turbulent benthic boundary layer.

Two BEAMS were simultaneously deployed on Palmyra Atoll located approximately one km apart over vastly different benthic communities. One site was a healthy reef with approximately 70% coral cover, and the other was a degraded reef site with only 5% coral cover that was dominated by a non-calcifying invasive corallimorph Rhodactis howesii. Over the course of two weeks, BEAMS collected over 1,000 measurements of NCP and NCC from each site, yielding significantly different ratios of NCP to NCC between the two sites. These initial results suggest that BEAMS is capable of detecting different metabolic states, as well as patterns consistent with degrading reef health.

BEAMS is an exciting new autonomous tool to monitor reef health and study drivers of reef metabolism on timescales ranging from minutes to months (and potentially years). Additionally, autonomous measurement tools increase the potential for widespread and comparable observations across reefs and reef systems. Such knowledge will greatly improve our ability to predict the fate of coral reefs in a changing ocean.

 

Authors: 
Yui Takeshita (Monterey Bay Aquarium Research Institute)

Filter by Keyword

abundance acidification africa air-sea interactions algae alkalinity allometry ammonium AMOC anoxic Antarctic anthro impacts anthropogenic carbon aquaculture aquatic continuum aragonite saturation arctic Argo argon arsenic artificial seawater Atlantic atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria bathypelagic BATS BCG Argo benthic bgc argo bio-go-ship bio-optical bioavailability biogeochemical cycles biogeochemical models biogeochemistry Biological Essential Ocean Variables biological pump biophysics bloom blue carbon bottom water boundary layer buffer capacity C14 CaCO3 calcification calcite carbon carbon-climate feedback carbon-sulfur coupling carbon budget carbon cycle carbon dioxide carbon export carbon sequestration carbon storage Caribbean CCA CCS changing marine ecosystems changing marine environments changing ocean chemistry chemical oceanographic data chemical speciation chemoautotroph chesapeake bay chl a chlorophyll circulation climate change climate variability CO2 coastal darkening coastal ocean cobalt Coccolithophores commercial community composition conservation cooling effect copepod coral reefs CTD currents cyclone daily cycles data data access data assimilation data management data product Data standards DCM dead zone decadal trends decomposers decomposition deep convection deep ocean deep sea coral deoxygenation depth diatoms DIC diel migration diffusion dimethylsulfide dinoflagellate discrete measurements DOC DOM domoic acid dust DVM ecology ecosystem management ecosystems eddy Education Ekman transport emissions ENSO enzyme equatorial regions ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export export fluxes export production EXPORTS extreme events faecal pellets fecal pellets filter feeders filtration rates fire fish Fish carbon fisheries fishing floats fluid dynamics fluorescence food webs forage fish forams freshening freshwater frontal zone functional role future oceans geochemistry geoengineering geologic time GEOTRACES glaciers gliders global carbon budget global ocean global warming go-ship grazing greenhouse gas Greenland ground truthing groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact human well-being hurricane hydrogen hydrothermal hypoxia ice age ice cores ice cover industrial onset inland waters in situ inverse circulation ions iron iron fertilization isotopes jellies katabatic winds kelvin waves krill kuroshio lab vs field land-ocean continuum larvaceans lateral transport LGM lidar ligands light light attenuation lipids machine learning mangroves marine carbon cycle marine heatwave marine particles marine snowfall marshes Mediterranean meltwater mesopelagic mesoscale metagenome metals methane methods microbes microlayer microorganisms microscale microzooplankton midwater mixed layer mixed layers mixing mixotrophy model modeling model validation mode water molecular diffusion MPT multi-decade n2o NAAMES NASA NCP nearshore net community production net primary productivity new ocean state new technology Niskin bottle nitrate nitrogen nitrogen cycle nitrogen fixation nitrous oxide north atlantic north pacific nuclear war nutricline nutrient budget nutrient cycling nutrient limitation nutrients OA ocean-atmosphere ocean acidification ocean acidification data ocean carbon uptake and storage ocean color ocean modeling ocean observatories ocean warming ODZ oligotrophic omics OMZ open ocean optics organic particles oscillation overturning circulation oxygen pacific paleoceanography parameter optimization particle flux partnerships pCO2 PDO peat pelagic PETM pH phenology phosphorus photosynthesis physical processes physiology phytoplankton PIC piezophilic piezotolerant plankton POC polar regions policy pollutants precipitation predation prediction pressure primary productivity Prochlorococcus prokaryotes proteins pteropods pycnocline radioisotopes remineralization remote sensing repeat hydrography residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satellite scale seafloor seagrass sea ice sea level rise seasonal patterns seasonal trends sea spray seawater collection seaweed secchi sediments sensors shelf ocean shelf system shells ship-based observations shorelines silicate silicon cycle sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST state estimation stoichiometry subduction submesoscale subpolar subtropical sulfate surf surface surface ocean Synechococcus technology teleconnections temperate temperature temporal covariations thermocline thermodynamics thermohaline thorium tidal time-series time of emergence titration top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features Tris trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport volcano warming water clarity water mass water quality waves western boundary currents wetlands winter mixing zooplankton

Copyright © 2023 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.