mmaheigan :: Ocean Carbon & Biogeochemistry

Studying marine ecosystems and biogeochemical cycles in the face of environmental change

Author Archive for mmaheigan

Estimating the large-scale biological pump: Do eddies matter?

Posted by mmaheigan

· Wednesday, December 4th, 2019

One factor that limits our capacity to quantify the ocean biological carbon pump is uncertainty associated with the physical injection of particulate (POC) and dissolved (DOC) organic carbon to the ocean interior. It is challenging to integrate the effects of these pumps, which operate at small spatial (<100 km) and temporal (<1 month) scales. Previous observational and fine-scale modeling studies have thus far been unable to quantify these small-scale effects. In a recent study published in Global Biogeochemical Cycles, authors explored the influence of these physical carbon pumps relative to sinking (gravity-driven) particles on annual and regional scales using a high-resolution (2 km) biophysical model of the North Atlantic that simulates intense eddy-driven subduction hotspots that are consistent with observations.

Figure 1: North Atlantic idealized double gyre ocean biophysical model. Top: Sea surface temperature, surface chlorophyll and mixed-layer depth during the spring bloom (March 21). Bottom: total export of organic carbon (POC+DOC) at 100 and individual contributions from the gravitational (particle sinking) and subduction (mixing, eddy advection and Ekman pumping) pumps for one day during the spring bloom (March 21) and averaged annually. Physical subduction hotspots visible on the daily export contribute little to the annual export due to strong compensation of upward and downward motions.

The authors showed that eddy dynamics can transport carbon below the mixed-layer (500-1000 m depth), but this mechanism contributes little (<5%) to annual export at the basin scale due to strong compensation between upward and downward fluxes (Figure 1). Additionally, the authors evidenced that small-scale mixing events intermittently export large amounts of suspended DOC and POC.

These results underscore the need to expand the traditional view of the mixed-layer carbon pump (wintertime export of DOC) to include downward mixing of POC associated with short-lived springtime mixing events, as well as eddy-driven subduction, which can contribute to longer-term ocean carbon storage. High-resolution measurements are needed to validate these model results and constrain the magnitude of the compensation between upward and downward carbon transport by small-scale physical processes.

Authors:
Laure Resplandy (Princeton University)
Marina Lévy (Sorbonne Université)
Dennis J. McGillicuddy Jr. (WHOI)

A role for tropical nitrogen fixers in glacial CO2 drawdown

Posted by mmaheigan

· Wednesday, December 4th, 2019

Iron fertilization of marine phytoplankton by Aeolian dust is a well-established mechanism for atmospheric carbon dioxide (CO₂) drawdown by the ocean. When atmospheric CO₂ decreased by 90-100 ppm during previous ice ages, fertilization of iron-limited phytoplankton in the high latitudes was thought to have contributed up to ¹/₃ (30 ppm) of the total CO₂ drawdown. Unfortunately, recent modeling studies suggest that substantially less CO₂ (only 2-10 ppm) is sequestered by the ocean in response to high latitude fertilization.

The limited capacity for high latitude CO₂sequestration in response to iron enrichment motivated the authors of a new study published in Nature Communications to address how lower latitude phytoplankton could contribute to CO₂ drawdown. The authors used an ocean model to show that in response to Aeolian iron fertilization, dinitrogen (N₂) fixers, specialized phytoplankton that introduce bioavailable nitrogen to tropical surface waters, drive the sequestration of an additional 7-16 ppm of CO₂ by the ocean.

Figure 1: Scenarios of Fe supply to the tropical Pacific. In the low iron scenario, analogous to the modern climate, N₂ fixation (yellow zone and dots) is concentrated in the Northwest and Southwest subtropical Pacific where aeolian dust deposition is greatest. Non-limiting PO₄ concentrations (green zone and dots) exist within the tropics and spread laterally from the area of upwelling near the Americas and at the equator (blue zone). In the high Fe scenario, analogous to the glacial climate, N₂ fixation couples to the upwelling zones in the east Pacific, enabling strong utilisation of PO₄, the vertical expansion of suboxic zones (grey bubbles) and a deeper injection of carbon-enriched organic matter (downward squiggly arrows).

These results provide evidence of a tropical ocean CO₂ sequestration pathway, the mere existence of which is hotly debated. Importantly, the study describes an additional mechanism of CO₂ drawdown that is complementary to the high latitude mechanism. When combined, their contributions elevate iron-driven CO₂ drawdown towards the expected 30 ppm, making iron fertilization a driver of a stronger biological pump on a global scale.

Authors:
Pearse Buchanan (University of Liverpool, University of Tasmania, CSIRO Oceans and Atmosphere, ARC Centre of Excellence in Climate System Science)
Zanna Chase (University of Tasmania)
Richard Matear (CSIRO Oceans and Atmosphere, ARC Centre of Excellence in Climate Extremes)
Steven Phipps (University of Tasmania)
Nathaniel Bindoff (University of Tasmania, CSIRO Oceans and Atmosphere, ARC Centre of Excellence in Climate Extremes, Antarctic Climate and Ecosystems Cooperative Research Centre)

New Report: Review of US GO-SHIP

Posted by mmaheigan

· Tuesday, December 3rd, 2019

New report available

Review of US GO-SHIP (Global Ocean Shipboard Hydrographic Investigations Program)
An OCB and US CLIVAR Report (November 2019)

In 2018 an external review committee convened to assess US GO-SHIP, an affiliate of international GO-SHIP, which performs global ship-based decadal surveys to collect, document, and store high precision and full depth hydrographic and biogeochemical data from the global ocean. The review committee assessed program planning, progress, and opportunities in collecting, providing, and synthesizing high quality hydrographic data to advance the scientific research goals of US CLIVAR and OCB. The review included a in depth community survey to gauge the effectiveness and value of US GO-SHIP operations, products and science and seeks to find opportunities to strengthen these in the future, over 100 responses were submitted as detailed in the new report.

US GO-SHIP External Review Committee
Frederick Bingham, U. North Carolina, Wilmington, chair
Susan Wijffels, Woods Hole Oceanographic Institution
Matt Mazloff, Scripps Institution of Oceanography
Galen McKinley, Columbia U.
Norm Nelson, U. California, Santa Barbara
Laurie Juranek, Oregon State U.

Supported by the OCB and US CLIVAR project offices

Read or download here.

Call for Nominations! Consensus Study on Deep Decarbonization Initiative

Posted by mmaheigan

· Thursday, November 21st, 2019

Consider nominating yourself or others to this Consensus Study sponsored by NASEM. Note the very fast turnaround for nominations (November 26).

The National Academies’ Board on Energy and Environmental Systems invites your nominations for qualified individuals to serve on a new consensus study, Accelerating Decarbonization in the United States: Technology, Policy, and Societal Dimensions. For this study, the National Academies seeks nominations for experts in the following general categories: energy technologies; resources; energy systems modeling; systems analysis and engineering; economics; policy analysis; sociology & behavioral sciences; innovation; information technology and controls; and historical perspective on innovation or climate change mitigation.

Please don’t feel constrained by those categories – suggest anyone that you feel can contribute and why. In addition, please think about the need for a diverse group and please nominate folks that have been highly productive on other committees.

Committee selection is critical to the success of National Academies’ projects. The National Academies is committed to the full participation of persons with disabilities, individuals from underrepresented demographic groups, and persons from all sexual orientation and gender identity groups in all phases of its work. Committee members must be well-respected in their specified fields of study and work and have a broad understanding of the domains relevant to the charge.

Suggestions can be sent to Rebecca DeBoer or John Holmes

Submit by Tuesday, November 26, 2019

New outreach and education items

Posted by mmaheigan

· Tuesday, November 19th, 2019

New Biological Pump from Emma Cavan (Imperial College London) and McCork Studios, which incorporates some key remineralization processes, from this recently published Nature paper.

New OA podcast featuring Libby Jewett, founding Director of the Ocean Acidification Program at the National Oceanic and Atmospheric Administration (NOAA).

Topics discussed include:

Chemistry of ocean acidification
Impact on animals and plant life
Coral reefs
Variation in acidification between oceans
Economic repercussions
Vulnerability of resources and human communities
Global effects of ocean acidification
Adaptation and management
Mitigation
Acidification of freshwater bodies
Geoengineering

See more OCB-relevant outreach & education products, videos and links!

IOCCG protocols are open for public comment

Posted by mmaheigan

· Tuesday, November 19th, 2019

The IOCCG sampling and measurement protocols for particulate organic carbon (POC) are now available for public comment until January 20, see these and other protocols open for comment.

The Equatorial Undercurrent influences the fate of the Oxygen Minimum Zone in the Pacific

Posted by mmaheigan

· Tuesday, November 12th, 2019

While the ocean as a whole is losing oxygen due to warming, oxygen minimum zones (OMZs) are maintained by a delicate balance of biological and physical processes; it is unclear how each one of them is going to evolve in the future. Changes to OMZs could affect the global uptake of carbon, the generation of greenhouse gases, and interactions among marine life. Current generation coarse-resolution (~1°) climate models compromise the ability to simulate low-oxygen waters and their response to climate change in the future because they fail to reproduce a major ocean current, the Equatorial Undercurrent (EUC). These shortcomings lead to an overly tilted upper oxygen minimum zone (OMZ) (Figure 1), thus exaggerating sensitivity to circulation changes and overwhelming other key processes like diffusion and biology. The EUC also plays a vital role in feeding the eastern Pacific upwelling region, connecting it to global climate variability.

Figure: Top: The boundary of the Oxygen Minimum Zone (OMZ) along the Equator is unrealistically tilted for current generation (coarse resolution) climate models, and improves with increased horizontal resolution. The tilt is due to a bad representation of the Equatorial Undercurrent in the coarse model, also seen in other coarse models. The exaggerated tilt of the OMZ boundary at the Equator leads to increased inter-annual variability of the depth of the upper OMZ boundary, via changes in the zonal flow (left). This phenomenon is found in most CMIP5 models (right) and could be responsible for the current inability to predict the change in OMZ extent for the next century.

A recent high‐resolution climate model study in Geophysical Research Letters significantly improved the representation of both the EUC and OMZ, suggesting that the EUC is a key player in OMZ variability. This study emphasizes the importance of improving transport processes in global circulation models to better simulate oxygen distribution and predict future OMZ extent. The results of this study imply that the fundamental dynamics maintaining this key ocean current could be categorically misrepresented in the current generation of climate models, potentially influencing the ability to predict future climate variability and trends.

Authors:
Julius J.M. Busecke (Princeton University)
Laure Resplandy (Princeton University)
John P. Dunne (NOAA/GFDL)

Biogeochemical controls of surface ocean phosphate

Posted by mmaheigan

· Tuesday, November 12th, 2019

Phosphorus availability is important for phytoplankton growth and more broadly ocean biogeochemical cycles. However, phosphate concentration is often below the analytical detection limit of the standard auto-analyzer technique. Thus, we know little about geographic phosphate variation across most low latitude regions. To address this issue, a global collaboration of scientists conducted a study published in Science Advances on combined phosphate measurements using high-sensitivity methods that yielded a detailed map of surface phosphate (Figure 1).

Figure 1: Fine-scale global variation of surface phosphate. Surface phosphate measured using high-sensitivity techniques revealed previously unrecognized low latitude differences in phosphate drawdown.

The study’s new globally expansive phosphate data set revealed previously unrecognized low-phosphate areas, including large regions of the Pacific Ocean—really low phosphate in the western North Pacific and to a lesser extent in the South Pacific. Although atmospheric iron input and nitrogen fixation are commonly described as regulators of surface phosphate, this study shows that shifts in the elemental stoichiometry (N:P:Fe) of the vertical nutrient supply play an additional role. Previous studies and climate models have suggested that the availability of phosphate is a first-order driver of ocean biogeochemical changes. Interestingly, this study suggests that marine ecosystems are more resilient to phosphate stress than previously thought. These findings underscore the importance of accurately quantifying nutrients at low concentrations for understanding the regulation of ocean ecosystem processes and biogeochemistry now and under future climate conditions.

And the data are of course available in BCO-DMO!

Authors:
Adam C. Martiny (University of California, Irvine)
Michael W. Lomas (Bigelow Laboratory for Ocean Sciences)
Weiwei Fu (University of California, Irvine)
Philip W. Boyd (University of Tasmania)
Yuh-ling L. Chen (National Sun Yat-sen University)
Gregory A. Cutter (Old Dominion University)
Michael J. Ellwood (Australian National University)
Ken Furuya (The University of Tokyo)
Fuminori Hashihama (Tokyo University of Marine Science and Technology)
Jota Kanda (Tokyo University of Marine Science and Technology)
David M. Karl (University of Hawaii)
Taketoshi Kodama (Japan Fisheries Research and Education Agency)
Qian P. Li (Chinese Academy of Sciences)
Jian Ma (Xiamen University)
Thierry Moutin (Université de Toulon)
E. Malcolm S. Woodward (Plymouth Marine Laboratory)
J. Keith Moore (University of California, Irvine)

The arsenic respiratory cycle in pelagic waters of Oxygen Deficient Zones

Posted by mmaheigan

· Wednesday, October 30th, 2019

Oxygen Deficient Zones (ODZs) are naturally occurring functionally anoxic regions of the open ocean which can act as proxies for early Earth’s anoxic ocean. Without free oxygen, microorganisms in these regions use alternative electron acceptors to oxidize organic material. These functionally anoxic regions are also hotspots for chemoautotrophic pathways. Some microorganisms can use arsenic based compounds to oxidize organic material, and others can couple nitrate reduction with arsenic oxidation supporting autotrophic carbon fixation thus linking arsenic respiration with carbon and nitrogen cycling. While arsenic concentrations in modern oceans are relatively low, the Precambrian ocean likely had periods of high arsenic concentrations. Integrating over time and space of anoxic waters, arsenic-based metabolisms may have had significant implications for the biogeochemical cycling of not only arsenic, but also carbon and nitrogen.

Figure 1: Arsenotrophic genes identified in the Eastern Tropical North Pacific Oxygen Deficient Zone. (A) Genomic complement for dissimilatory arsenate reduction assembled from metagenomes which likely supports respiration of organic matter. (B) Genomic complement for putative chemoautotrophic arsenite oxidation pathway assembled from metagenomes which may couple with nitrate reduction to support organic matter production. (C) Relative abundance of genes associated with arsenite oxidase (aioA), dissimilatory arsenate reduction (arrA), and forward dissimilatory sulfite reductase (dsrA) associated with sulfur reduction; abundance shown as a relative contribution to the total microbial community as estimated by abundance of RNA polymerase genes (rpoB). The genes arrA and forward-dsrA are more abundant in the particulate fraction, whereas aioA is more abundant in the free-living fraction. (D) Relative abundance of genes in the microbial community for the more abundant genes aioA-like and reverse form of dsrA associated with sulfur oxidation. aioA-like genes are relatively more abundant within the particulate fraction, with no strong partitioning between fractions identified for the reverse-dsrA genes. Arsenical reduction and chemoautotrophic arsenical oxidation are likely performed by different microbial groups within the ODZ communities.

Recent work in PNAS identified gene sequences for a complete arsenic respiratory cycle from Eastern Tropical North Pacific (ETNP) ODZ metagenomes. The authors identified arsenotrophic genes for dissimilatory arsenate reduction from one group of microorganisms and genes for a putative chemoautotrophic arsenite oxidation pathway from another group within the ETNP ODZ microbial community. Analysis of genomic sequences from a free-living sample and from particulate-associated sample indicate niche differentiation of these pathways—arsenate reduction genes enriched within the particulate fraction and arenite oxidation enriched in the free-living water column. In addition to the presence of these genes in metagenomes, the authors identified the active expression of these arsenotrophic genes in publicly available metatranscriptomes from the ETNP and Eastern Tropical South Pacific ODZs. Theyalso found an abundance of sequences in the ETNP ODZ for the gene aioA-like, which is a closely related enzyme to arsenite oxidase (aioA), but with an unconfirmed function. The identification of these actively expressed genes in modern ODZs enables further investigation of these cycles that were likely important in early oceans. These findings also highlight that there are still yet to be discovered respiratory pathways in ODZs. Arsenotrophy, in conjunction with other niche respiratory pathways – both known and as yet undiscovered – likely sum to a considerable contribution of energy flow and elemental cycling through these anoxic systems.

Authors:
Jaclyn Saunders (University of Washington; present affiliation Woods Hole Oceanographic Institution)
Clara Fuchsman (University of Washington; present affiliation Horn Point Laboratory)
Cedar McKay & Gabrielle Rocap (University of Washington)

See related University of Washington press-release

Pumped up by the cold: Increased elemental density in polar diatoms

Posted by mmaheigan

· Monday, October 28th, 2019

Large diatoms are common in polar phytoplankton blooms, contributing significantly to food webs and carbon export, but relatively little is known about their elemental biogeochemistry. A recent study in Frontiers in Marine Science showed that the size-dependent increase in cell nutrient content for polar diatoms was similar to published values for temperate diatoms, whereas the elemental density (mass per unit volume) of polar diatoms was substantially greater for all elements measured (carbon, nitrogen, silicon and phosphorus). Furthermore, at near freezing culture temperatures, there was a positive relationship between diatom size and realized growth rates near their theoretical maximum (Figure 1). Because of the differences in elemental density between carbon and silica, these diatoms exhibited particulate C:Si ratios that are commonly interpreted as a sign of iron limitation; yet these cultures were trace metal-replete. The observed elemental composition differences suggest that it may be important for polar biogeochemical models to include different representations of diatom biogeochemistry by accounting for the functions of size and near freezing temperature.

Figure 1. Left: Cellular carbon content for polar diatoms across four orders of magnitude in biovolume compared to the same relationship for a wide range of non-polar diatoms (MD&L = Menden-Deuer & Lessard, 2000). The y-intercept is the estimate of the baseline carbon density in these polar diatoms, and is significantly higher than the literature values reviewed in MD&L (2000). Right: Growth rate of the same polar diatoms expressed as a percent of their calculated maximum growth rate at 2°C. Error bars represent the range of values observed in the experiments. Maximum growth rate was estimated by 1) applying the growth rate/biovolume relationships published by Chisholm (1992) and Edwards et al. (2012) to the observed biovolume for each culture, and 2) scaling this growth rate to 2°C growth temperature using the relationship of Eppley (1972).

Authors:
Michael Lomas (Bigelow Laboratory for Ocean Sciences)
Steven Baer (Maine Maritime Academy)
Sydney Acton (Dauphin Island Sea Lab)
Jeffrey Krause (Dauphin Island Sea Lab and University of South Alabama)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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