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Archive for ocean carbon uptake and storage

Blue hole in the South China Sea reveals ancient carbon

Posted by mmaheigan

· Wednesday, July 8th, 2020

Blue holes are unique depositional environments that are formed within carbonate platforms. Due to an enclosed geomorphology that restricts water exchange, blue hole ecosystems are typically characterized by steep biogeochemical gradients and distinctive microbial communities. For the past three decades, studies have described vertical gradients in physical, chemical, and biological parameters that typify blue hole water columns, but their elemental cycles, particularly carbon, remain poorly understood.

Figure 1. Aerial photo of the Yongle Blue Hole in the South China Sea (Credit: P. Yao et al./JGR Biogeosciences)

In July 2016, the Yongle Blue Hole (YBH) was discovered to be the deepest known blue hole on Earth (~300 m). YBH is located in the Xisha Islands of the South China Sea. The unique features and ease of accessibility make YBH an ideal natural laboratory for studying carbon cycling in marine anoxic systems. In a recent study published in JGR Biogeosciences, the authors reported extremely low concentrations of dissolved organic carbon (DOC) (e.g., 22 µM) and very high concentrations of dissolved inorganic carbon (DIC) (e.g., 3,090 µM) in YBH deep waters. Radiocarbon dating revealed that the YBH DOC and DIC were unusually old, yielding ages (6,810 and 8270 years BP, respectively) that are much more typical of open ocean deep water. Based on H₂S and microbial community composition profiles, the authors concluded that sharp redox gradients and a high abundance of sulfur cycling bacteria were likely responsible for much of the DOC consumption in YBH. The unusually low concentrations and old DOC ages in the relatively shallow YBH suggest short-term cycling of recalcitrant DOC in oceanic waters, which has been recognized as a long-term microbial carbon sink in the global ocean. The stoichiometry of DIC and total alkalinity changes suggested that the accumulation of DIC in the deep layer of the YBH was largely derived from both the dissolution of carbonate and OC decomposition through sulfate reduction. However, the role of carbonate dissolution from the walls of the blue hole in affecting the old ages of carbon in this system remain uncertain, yet there appears to no evidence of subterranean freshwater into the bottom waters of the blue hole. In the face of expanding oxygen minimum zones and anthropogenically-induced coastal hypoxia, blue holes such as YBH can provide an accessible natural laboratory in which to study the microbial and biogeochemical features that typify these low-oxygen systems.

Authors:
Peng Yao (Ocean University of China)
Thomas S. Bianchi (University of Florida)
Xuchen Wang (Ocean University of China)
Zuosheng Yang (Ocean University of China)
Zhigang Yu (Ocean University of China)

A Methane-Charged Carbon Pump in Shallow Marine Sediments

Posted by mmaheigan

· Wednesday, June 3rd, 2020

Ocean margins are often characterized by the transport of methane, a potent greenhouse gas, entering from the subsurface and moving towards the seafloor. However, a significant portion of subsurface methane is consumed within shallow sediments via microbial driven anaerobic oxidation of methane (AOM). AOM converts the methane carbon to dissolved inorganic carbon (DIC) and reduces the amount of sulfate that diffuses down from the seafloor towards a sediment interval known as the sulfate-methane transition zone (SMTZ). The SMTZ is where the upward flux of methane encounters the downward diffusive sulfate flux (Figure 1). While the mechanisms of methane production and consumption have been extensively studied, the fate of the DIC that is produced in methane-charged sediments is not well constrained.

In a recent study published in Frontiers in Marine Science, authors used existing reports of methane and sulfate flux values to the SMTZ and synthesized a carbon flow model to quantify the DIC cycling in diffusive methane flux sites globally. They report an annual average of 8.7 Tmol (1 Tmol = 10¹² moles) of DIC entering the diffusive methane-charged shallow marine sediments due to sulfate reduction coupled with AOM and organic matter degradation, as well as DIC input from depth (Figure 1). Approximately 75% (average of 6.5 Tmol year^–1) of this DIC pool flows upward toward the water column, making it a potential contributor to oceanic CO₂and ocean acidification. Further, an average of 1.7 Tmol year^–1DIC precipitates as methane-derived authigenic carbonates. This synthesis emphasizes the importance of the SMTZ, not only as a methane sink but also an important biogeochemical front for global DIC cycling.

Figure 1: A simplified representation of DIC cycling at diffusive methane charged settings.

The study highlights that regions characterized by diffusive methane fluxes can contribute significantly to the oceanic inorganic carbon pool and sedimentary carbonate accumulation. DIC outflux from the methane-charged sediments is comparable to ~20% global riverine DIC flux to oceans. Methane-derived authigenic carbonate precipitation is comparable to ~15% of carbonate accumulation on continental shelves and in pelagic sediments, respectively. These pathways must be included in coastal and geologic carbon models.

Authors:
Sajjad Akam (Texas A&M University-Corpus Christi)
Richard Coffin (Texas A&M University-Corpus Christi)
Hussain Abdulla (Texas A&M University-Corpus Christi)
Timothy Lyons (University of California, Riverside)

Light matters for biological pump assessments

Posted by mmaheigan

· Thursday, May 7th, 2020

Organic carbon produced during photosynthesis in the sunlit euphotic zone is transported to the deep ocean via the ocean’s biological carbon pump (BCP). Even small changes in the BCP efficiency changes the carbon dioxide gradient across the ocean‐atmosphere interface, thus influencing global climate. A recent study in PNAS demonstrate that prior studies that estimate BCP efficiencies at a fixed depth fail because they do not consider the varying depth of light penetration, which ultimately controls production of sinking organic carbon and varies by location and season. Subsequently, the fixed depth approach introduces regional biases and underestimates global estimates of BCP efficiency by two-fold (Figure 1). These new findings make the case for using euphotic zone‐based metrics rather than applying a fixed depth to compare BCP efficiencies between sites. Improved estimates of BCP efficiency will lead to a better understanding of the mechanisms that control ocean carbon fluxes and its feedbacks on climate.

Figure 1: Carbon loss from the surface ocean shows more variability and is twice as high if measured at the depth where sunlight penetrates (left) vs. 150 meters (about 500 feet; right) where it is commonly measured. One Pg is 10¹⁵ grams with close to 6 Pg of carbon being transported to depth per year in left panel. In comparison, about 10 Pg C/yr is released to the atmosphere as a result of human activity.

Authors:
Ken Buesseler (WHOI)
Philip Boyd (IMAS Univ. Tasmania)
Erin Black (Dalhousie University)
David Siegel (University of California, Santa Barbara)

Also see: Tiny plankton drive processes in the ocean that capture twice as much carbon as scientists thought on The Conversation.

Featured on the cover of the PNAS May 5, 2020 issue:

Autonomous platforms yield new insights on North Atlantic bloom phenology

Posted by mmaheigan

· Wednesday, April 22nd, 2020

Phytoplankton produces organic carbon, which serves as a major energy source in marine food webs and plays an important role in the global carbon cycle. Studies of phytoplankton seasonal timing (phenology) have been a major focus in oceanography, especially in the subpolar North Atlantic region, where massive increases in phytoplankton biomass (blooms) occur during the winter-spring transition.

Figure 1. Panel a: Each line represents the trajectory of a profiling Argo float deployed during the North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) expeditions (12 total); the initial float deployment location is denoted by a filled circle. The bar chart (inset right bottom) indicates float deployment durations. Panel b: Seasonal climatologies of C_phyto (green), µ (blue), l (red), and r (grey) from Argo floats for all 4 regions (D1-D4 as indicated on map in Panel a).

Many hypotheses based on data from shipboard discrete sampling or satellite remote sensing have been proposed to explain drivers of phytoplankton bloom formation and dynamics. However, discrete shipboard sampling limits both spatial and temporal coverage, and satellite approaches cannot provide direct information at depth. To address this gap in spatiotemporal coverage, a recent study in Frontiers in Marine Science, applied bio-optical measurements from 12 Argo profiling floats to study the year-round phytoplankton phenology in a north-south section of the western North Atlantic Ocean (40° N to 60° N). The authors calculated phytoplankton division rate (µ), loss rate (l), and carbon accumulation rate (r) using the Argo-based Chlorophyll-a (Chl) and phytoplankton carbon (C_phyto) estimates. Latitudinally varying phytoplankton dynamics were observed, with a higher (and later) C_phyto peak in the north, and stronger μ–r decoupling and increased proportion of winter to total annual production in the south (Figure 1). Seasonal phenology patterns arise from interactions between “bottom-up” (e.g., resources for growth) and “top-down” (e.g., grazing, mortality) factors that involve both biological and physical drivers. The Argo float data are consistent with the disturbance recovery hypothesis (DRH) over a full annual cycle. Float-based mixed layer phytoplankton phenology observations were comparable to satellite remote sensing observations. In a data-model comparison, outputs from an eddy-resolving ocean simulation only reproduced some of the observed phytoplankton phenology, indicating possible biases in the simulated physical forcing, turbulent dynamics, and biophysical interactions.

In addition to seasonal patterns in the mixed layer, float-based measurements provide information on the vertical distribution of physical and biogeochemical quantities and therefore are complementary to the satellite measurements. This powerful combination of observing assets enhances spatiotemporal coverage, thus enabling us to better observe, compare, model, and predict seasonal phytoplankton dynamics in the subpolar North Atlantic.

Authors:
Bo Yang (University of Virginia)
Emmanuel S. Boss (University of Maine)
Nils Haëntjens (University of Maine)
Matthew C. Long (National Center for Atmospheric Research)
Michael J. Behrenfeld (Oregon State University)
Rachel Eveleth (Oberlin College)
Scott C. Doney (University of Virginia)

Tiny, but effective: Gelatinous zooplankton and the ocean biological carbon pump

Posted by mmaheigan

· Wednesday, March 25th, 2020

Barely visible to the naked eye, gelatinous zooplankton play important roles in marine food webs. Cnidaria, Ctenophora, and Urochordata are omnipresent and provide important food sources for many more highly developed marine organisms. These small, nearly transparent organisms also transport large quantities of “jelly-carbon” from the upper ocean to depth. A recent study in Global Biogeochemical Cycles focused on quantifying the gelatinous zooplankton contribution to the ocean carbon cycle.

Figure 1. Processes and pathways or gelatinous carbon transfer to the deep ocean.

Using >90,000 data points (1934 to 2011) from the Jellyfish Database Initiative (JeDI), the authors compiled global estimates of jellyfish biomass, production, vertical migration, and jelly carbon transfer efficiency. Despite their small biomass relative to the total mass of organisms living in the upper ocean, their rapid, highly efficient sinking makes them a globally significant source of organic carbon for deep-ocean ecosystems, with 43-48% of their upper ocean production reaching 2000 m, which translates into 0.016 Pg C yr^-1.

Figure 2. Mass deposition event of jellyfish at 3500 m in the Arabian Sea (Billett et al. 2006).

Sediment trap data have suggested that carbon transport associated with large, episodic gelatinous blooms in localized open ocean and continental shelf regions could often exceed phytodetrital sources, in particular instances. These mass deposition events and their contributions to deep carbon export must be taken into account in models to better characterize marine ecosystems and reduce uncertainties in our understanding of the ocean’s role in the global carbon cycle.

Links:

Jellyfish Database Initiative http://jedi.nceas.ucsb.edu, http://jedi.nceas.ucsb.edu-dmo.org/dataset/526852 )

Authors:
Mario Lebrato (Christian‐Albrechts‐University Kiel and Bazaruto Center for Scientific Studies, Mozambique)
Markus Pahlow (GEOMAR)
Jessica R. Frost (South Florida Water Management District)
Marie Küter (Christian‐Albrechts‐University Kiel)
Pedro de Jesus Mendes (Marine and Environmental Scientific and Technological Solutions, Germany)
Juan‐Carlos Molinero (GEOMAR)
Andreas Oschlies (GEOMAR)

Can phytoplankton help us determine ocean iron bioavailability?

Posted by mmaheigan

· Wednesday, March 11th, 2020

Iron (Fe) is a key element to sustaining life, but it is present at extremely low concentrations in seawater. This scarcity limits phytoplankton growth in large swaths of the global ocean, with implications for marine food webs and carbon cycling. The acquisition of Fe by phytoplankton is an important process that mediates the movement of carbon to the deep ocean and across trophic levels. It is a challenge to evaluate the ability of marine phytoplankton to obtain Fe from seawater since it is bound by a variety of poorly defined organic complexes.

Figure 1: Schematic representation of the reactions governing dissolved Fe (dFe) bioavailability to phytoplankton (a) Bioavailability of dFe in seawater collected from various basins and depth and probed with different iron-limited phytoplankton species under dim laboratory light and sunlight (b) (See paper for further details on samples and species)

A recent study in The ISME Journal proposes a new approach for evaluating seawater dissolved Fe (dFe) bioavailability based on its uptake rate constant by Fe-limited cultured phytoplankton. The authors collected samples from distinct regions across the global ocean, measured the properties of organic complexation, loaded these complexes with a radioactive Fe isotope, and then tracked the internalization rates from these forms to a diverse set of Fe-limited phytoplankton species. Regardless of origin, all of the phytoplankton acquired natural organic complexes at similar rates (accounting for cell surface area). This confirms that multiple Fe-limited phytoplankton species can be used to probe dFe bioavailability in seawater. Among water types, dFe bioavailability varied by ~4-fold and did not clearly correlate with Fe concentrations or any of the measured Fe speciation parameters. This new approach provides a novel way to determine Fe bioavailability in samples from across the oceans and enables modeling of in situ Fe uptake rates by phytoplankton based simply on measured Fe concentrations.

Authors:
Yeala Shaked (Hebrew University of Jerusalem)
Kristen N. Buck (University of South Florida)
Travis Mellett (University of South Florida)
Maria. T. Maldonado (University of British Columbia)

Untangling microbial evolution in the oceans: How the interaction of biological and physical timescales determine marine microbial evolutionary strategies

Posted by mmaheigan

· Wednesday, March 11th, 2020

Marine microbes are the engines of global biogeochemical cycling in the oceans. They are responsible for approximately half of all photosynthesis on the planet and drive the ‘biological pump’, which transfers organic carbon from the surface to the deep ocean. As such, it is important to determine how marine microbes will adapt and evolve in response to a changing climate in order to understand and predict how the global carbon cycle may change. However, we still lack a mechanistic understanding of how and how fast microorganisms adapt to stressful and changing environments. This is particularly challenging due to the diversity of organisms that live in the ocean and the dynamic nature of the oceans themselves—microbes are at the whim of ocean currents and so get transported large distances fairly quickly. For the first time, a new study published in PNAS provides a prediction on the controls of microbial evolutionary timescales in the oceans. The authors hypothesize that there is a trade-off for marine microbes between ability to evolve to long-term changes versus respond to shorter term variability. Their results suggest that marine microbes commonly experience conditions that favor a short-term strategy at the cost of long-term adaptation. This trade-off determines evolutionary timescales and provides a foundation for understanding distributions of microbial traits and biogeochemistry.

Illustration of trade-off in evolutionary strategy as a function of environmental variability. Trajectories where individuals perceived high environmental variability (a & b) exhibited low selective pressure for any one environment but allowed for high environmental tracking. Trajectories where individuals perceived a more stable environment (c&d) had high selective pressure for ’new environments’ (high probability of a selective sweep) but these individuals exhibited poor environmental tracking. Panels a and c show trajectories where selective sweeps were highly probable (red), likely (yellow), and had a low probability (grey). Panels b and d show the estimated persistence of non-genetic modifications necessary for environmental tracking, where grey indicates unrealistically long timescales.

Authors:
Nathan G. Walworth (University of Southern California)
Emily J. Zakem (University of Southern California)
John P. Dunne (Geophysical Fluid Dynamics Laboratory, NOAA)
Sinéad Collins (University of Edinburgh)
Naomi M. Levine (University of Southern California)

Hurricane-driven surge of labile carbon into the deep North Atlantic Ocean

Posted by mmaheigan

· Thursday, February 27th, 2020

Tropical cyclones (hurricanes and typhoons) are the most extreme episodic weather event affecting subtropical and temperate oceans. Hurricanes generate intense surface cooling and vertical mixing in the upper ocean, resulting in nutrient upwelling into the photic zone and episodic phytoplankton blooms. However, their influence on the deep ocean is unknown.

Figure 1. (a) Particulate organic carbon (POC) flux and percentage of the total mass flux (yellow) (top panel); fluxes (middle panel) and POC-normalized concentrations (bottom panel) of diagnostic lipid biomarkers for phytoplankton-derived and labile material, zooplankton, bacteria, and other (see legend); (b) Lipid concentrations (left panel) and POC-normalized concentrations (right panel) of diagnostic lipid biomarkers for the same sources as in (a) (see legend) measured two weeks after Nicole’s passage (25-29 Oct. 2016). Shown for reference are total lipid concentration profiles in April 2015 (dark gray, typical post spring bloom conditions) and Nov 2015 (light gray, typical minimum production period).

In October 2016, Category 3 Hurricane Nicole passed over the Bermuda time-series site (Oceanic Flux Program (OFP) and Bermuda Atlantic Time-Series site (BATS)) in the oligotrophic NW Atlantic Ocean. In a recent study published in Geophysical Research Letters, authors synthesized multidisciplinary data from hydrographic and phytoplankton measurements and lipid composition of sinking and suspended particles collected from OFP and BATS, respectively, after Hurricane Nicole in 2016. After the hurricane passed, particulate fluxes of lipids diagnostic of fresh phytodetritus, zooplankton, and microbial biomass increased by 30-300% at 1500 m depth and 30-800% at 3200 m depth (Figure 1a). In addition, mesopelagic suspended particles were enriched in phytodetrital material, as well as zooplankton- and bacteria-sourced lipids (Figure 1b), indicating particle disaggregation and a deep-water ecosystem response.

These results suggest that carbon export and biogeochemical cycles may be impacted by climate-induced changes in hurricane frequency, intensity, and tracks, and, underscore the sensitivity of deep ocean ecosystems to climate perturbations.

Authors:
Rut Pedrosa-Pamies (Marine Biological Laboratory)
Maureen H. Conte (Bermuda Institute of Ocean Science and Marine Biological Laboratory)
JC Weber (Marine Biological Laboratory)
Rodney Johnson (Bermuda Institute of Ocean Science)

Krillin’ it with poop: Highlighting the importance of Antarctic krill in ocean carbon and nutrient cycling

Posted by mmaheigan

· Tuesday, February 4th, 2020

Scientists have long known the role of Antarctic krill (Euphausia superba) in Southern Ocean ecosystems. Evidence is gathering about krill’s biogeochemical importance through releasing millions of faecal pellets in swarms and stimulating primary production through nutrient excretion. Here, we explore and synthesise the known impacts that this highly abundant and rather large species has on the environment. Krill exemplify how metazoa can play a dominant role in shaping ocean biogeochemistry, thus providing additional motivation for protecting certain harvested species.

Figure 1: The ecological roles of krill in Southern Ocean biogeochemical cycles, including releasing faecal pellets, excreting nutrients whilst grazing, and larval krill migrating throughout the water column, shedding exoskeletons, and feeding on the seabed.

A review published in Nature Communications uncovers at least 13 possible pathways by which Antarctic krill either influence the carbon sink or release fertilizing nutrients (Figure 1). Their large size (up to 7 cm) and swarming nature (millions of krill aggregate) enable krill to strongly impact ocean biogeochemistry. Swarms release large numbers of faecal pellets, overwhelming detritivores and resulting in a large sink of faecal carbon. Krill may physically mix nutrients from the deep ocean and become a decades-long carbon store in whale biomass. Antarctic krill larvae, which live near the sea-ice, undergo deeper diel vertical migrations compared to adult Antarctic krill (400 m vs. 200 m), so any carbon respired or faecal pellets released by larvae could remain in the deep ocean longer than those released by adult krill at a shallower depth; the larval krill contribution to carbon export has not been quantified. Furthermore, it is currently unknown how many krill larvae are removed from the Antarctic krill fishery as by-catch. Perhaps the biggest challenge in constraining the role of krill (adult and larvae) in biogeochemical cycles is our limited capacity to quantify the abundance and biomass of Antarctic krill, since shipboard sampling methods (nets or acoustics) have limited spatial and temporal coverage. Ultimately, the Southern Ocean is an important physical AND biological sink of carbon, and we must consider the role krill and other animals have in this cycle.

Figure 2: Processes in the biological carbon pump including the sinking of dead phytoplankton aggregates, zooplankton, krill and fish faecal pellets and dead animals. Microbial remineralisation is depicted through the return of particulate organic carbon to dissolved organic carbon (DOC) and eventually carbon dioxide.

Authors:
Emma Cavan (Imperial College London and University of Tasmania)
Anna Belcher (British Antarctic Survey)
Angus Atkinson (Plymouth Marine Laboratory)
Simeon Hill (British Antarctic Survey)
So Kawaguchi (Australian Antarctic Division)
Stacey McCormack (University of Tasmania)
Bettina Meyer (Alfred Wegener Institute for Polar and Marine Research and University of Oldenburg)
Stephen Nicol (University of Tasmania)
Lavenia Ratnarajah (University of Liverpool)
Katrin Schmidt (University of Plymouth)
Deborah Steinberg (Virginia Institute of Marine Science)
Geraint Tarling (British Antarctic Survey)
Philip Boyd (University of Tasmania and Antarctic Climate and Ecosystems Cooperative Research Centre)

Ocean iron fertilization commercialization: bad idea; Continued research: good idea

Posted by mmaheigan

· Tuesday, January 21st, 2020

Amidst little to no substantive global action on climate change mitigation, individuals and companies have been exploring various geoengineering strategies as a possible alternative. Ocean Iron Fertilization (OIF) is an ocean-based strategy that involves the addition of iron to the sunlit upper layers of the ocean in iron-limited areas such as the Southern Ocean in order to stimulate marine phytoplankton growth and increase drawdown of carbon dioxide. Authors of a recent technology review in the Journal of Science Policy & Governance argue that a market-based approach to Southern Ocean iron fertilization is not advisable, but recommends continued research into the matter.

Figure 1: Idealized schematic of carbon cycling and the biological in a natural High Nutrient Low Chlorophyll Region (HNLC) and an iron fertilized HLNC. White arrows represent carbon transport. The addition of iron may dramatically increase surface biomass but only a small fraction of that is additional sequestered in the deep ocean or the sea floor.

This study begins by asking whether or not fertilizing the Southern Ocean could actually create a sustainable carbon sink. A comprehensive literature review revealed that while iron fertilization almost certainly will stimulate new primary production, what is much less clear is how much of that carbon will sink out of the surface ocean and be sequestered long-term. Given the scientific uncertainty, it would be ill-advised to commercialize iron fertilization in emerging carbon offset markets. In addition to concerns about the fundamental feasibility and potential adverse side effect of fertilization, the study argues that any market framework would be corrupted by perverse incentives created by the inability to establish reliable baselines or to accurately and comprehensively document and quantify the effects of fertilization, thus making it impossible to provide fair and consistent compensation. Nevertheless, recent history shows that fertilization activity on unregulated voluntary offset markets motivated by the promise of an easy fix can and will continue to emerge. This study concludes that continued research is needed to constrain the public perception and clarify the reality of an iron bullet.

Author:
Tyler Rohr (MIT/WHOI, currently at US Department of Energy)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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