Archive for phosphorus

A new Regional Earth System Model of the Mediterranean Sea biogeochemical dynamics

Posted by mmaheigan 
· Thursday, November 19th, 2020 

The Mediterranean Sea is a semi-enclosed mid-latitude oligotrophic basin with a lower net primary production than the global ocean. A west-east productivity trophic gradient results from the superposition of biogeochemical and physical processes, including the biological pump and associated carbon and nutrient (nitrogen, phosphorus) fluxes, the spatial asymmetric distribution of nutrient sources (rivers, atmospheric deposition, coastal upwelling, etc.), the estuarine inverse circulation associated with the inflow of Atlantic water through the Gibraltar Strait. The complex and highly variable interface between land and sea throughout this basin add a further layer of complexity in the Mediterranean oceanic and atmospheric circulation and on the associated biogeochemistry dynamics, emphasizing the need for high-resolution truly integrated Regional Earth System Models to track and understand fine-scale processes and ecosystem dynamics.

In a recent paper published in the Journal of Advances in Modeling Earth System, the authors introduced a new version of the Regional Earth System model RegCM-ES and evaluated its performance in the Mediterranean region. RegCM-ES fully integrates the regional climate model RegCM4, the land surface scheme CLM4.5 (Community Land Model), the river routing model HD (Hydrological Discharge Model), the ocean model MITgcm (MIT General Circulation model) and the Biogeochemical Flux Model BFM.

A comparison with available observations has shown that RegCM-ES was able to capture the mean climate of the region and to reproduce horizontal and vertical patterns of chlorophyll-a and PO4 (the limiting nutrient in the basin) (Figure 1). The same comparison revealed a systematic underestimation of simulated dissolved oxygen (which will be fixed by the use of a new parametrization of oxygen solubility), and an overestimation of NO3, possibly due to uncertainties in initial and boundary conditions (mostly traced to river and Dardanelles nutrient discharges) and an overly vigorous vertical mixing simulated by the ocean model in some parts of the Basin.

Figure.1 Distributions of chlorophyll-a mg/m3 (top) and PO4 mmol/m3 (bottom) in the Mediterranean Sea as simulated by RegCM-ES.

Overall, this analysis has demonstrated that RegCM-ES has the capabilities required to become a powerful tool for studying regional dynamics and impacts of climate change on the Mediterranean Sea and other ocean basins around the world.

 

Authors:
Marco Reale (Abdus Salam International Centre for theoretical physics-ICTP, National Institute of Oceanography and Experimental Geophysics-OGS)
Filippo Giorgi (Abdus Salam International Centre for theoretical physics-ICTP)
Cosimo Solidoro (National Institute of Oceanography and Experimental Geophysics-OGS)
Valeria Di Biagio (National Institute of Oceanography and Experimental Geophysics-OGS)
Fabio Di Sante (Abdus Salam International Centre for theoretical physics-ICTP)
Laura Mariotti (National Institute of Oceanography and Experimental Geophysics-OGS)
Riccardo Farneti (Abdus Salam International Centre for theoretical physics-ICTP)
Gianmaria Sannino (Italian National Agency for New Technologies, Energy and Sustainable Economic Development-ENEA)

Biogeochemical controls of surface ocean phosphate

Posted by mmaheigan 
· Tuesday, November 12th, 2019 

Phosphorus availability is important for phytoplankton growth and more broadly ocean biogeochemical cycles. However, phosphate concentration is often below the analytical detection limit of the standard auto-analyzer technique. Thus, we know little about geographic phosphate variation across most low latitude regions. To address this issue, a global collaboration of scientists conducted a study published in Science Advances on combined phosphate measurements using high-sensitivity methods that yielded a detailed map of surface phosphate (Figure 1).

Figure 1: Fine-scale global variation of surface phosphate. Surface phosphate measured using high-sensitivity techniques revealed previously unrecognized low latitude differences in phosphate drawdown.

The study’s new globally expansive phosphate data set revealed previously unrecognized low-phosphate areas, including large regions of the Pacific Ocean—really low phosphate in the western North Pacific and to a lesser extent in the South Pacific. Although atmospheric iron input and nitrogen fixation are commonly described as regulators of surface phosphate, this study shows that shifts in the elemental stoichiometry (N:P:Fe) of the vertical nutrient supply play an additional role. Previous studies and climate models have suggested that the availability of phosphate is a first-order driver of ocean biogeochemical changes. Interestingly, this study suggests that marine ecosystems are more resilient to phosphate stress than previously thought. These findings underscore the importance of accurately quantifying nutrients at low concentrations for understanding the regulation of ocean ecosystem processes and biogeochemistry now and under future climate conditions.

And the data are of course available in BCO-DMO!

 

Authors:
Adam C. Martiny (University of California, Irvine)
Michael W. Lomas (Bigelow Laboratory for Ocean Sciences)
Weiwei Fu (University of California, Irvine)
Philip W. Boyd (University of Tasmania)
Yuh-ling L. Chen (National Sun Yat-sen University)
Gregory A. Cutter (Old Dominion University)
Michael J. Ellwood (Australian National University)
Ken Furuya (The University of Tokyo)
Fuminori Hashihama (Tokyo University of Marine Science and Technology)
Jota Kanda (Tokyo University of Marine Science and Technology)
David M. Karl (University of Hawaii)
Taketoshi Kodama (Japan Fisheries Research and Education Agency)
Qian P. Li (Chinese Academy of Sciences)
Jian Ma (Xiamen University)
Thierry Moutin (Université de Toulon)
E. Malcolm S. Woodward (Plymouth Marine Laboratory)
J. Keith Moore (University of California, Irvine)

Role for iron in controlling microbial phosphorus acquisition in the ocean

Posted by mmaheigan 
· Thursday, October 12th, 2017 

In the subtropical North Atlantic, dissolved inorganic phosphorus (DIP) concentrations are depleted and might co-limit N2 fixation and microbial productivity. There are relatively large pools of dissolved organic phosphorus (DOP), but microbes need an enzyme to access this P source. One such alkaline phosphatase (APase) enzyme requires zinc (Zn) as its activating cofactor. This has been known for almost 30 years. However, recent crystallography studies revealed that two other widespread APase enzymes contain Fe. Via this requirement, Fe availability could regulate microbial access to the DOP pool.

As detailed in a recent publication in Nature Communications (Browning et al. 2017), this hypothesis was tested on a cruise across the tropical North Atlantic by adding Fe and Zn to incubated seawater and monitoring changes in bulk APase using a simple fluorescence assay. Adding Fe significantly increased APase activity in seawater samples collected in areas that were far-removed from coastal and aerosol Fe sources. Despite seawater Zn concentrations being much lower than Fe, it appeared not to be limiting.

 

Iron (Fe) and zinc (Zn) enrichment experiments conducted in the DIP-depleted tropical North Atlantic suggested that Fe, not Zn, could limit alkaline phosphatase activity (APA). DIP*=DIP–DIN/16, and represents excess DIP availability assuming a 16-fold higher microbial N requirement. Results in the bar chart represent a subset of treatments from one experiment (out of eight conducted).

DIP is depleted in surface waters of the tropical North Atlantic because inputs of North African aerosol Fe stimulates N2 fixation and leads to microbial drawdown of DIP. If the modern ocean is a good analog for the past, the lack of APase stimulation following experimental Zn addition could reflect limited evolutionary selection for Zn-containing APase. In general, DIP is only substantially depleted where there is enhanced Fe input fueling N2 fixation; it therefore follows that any significant requirement for APases might be restricted to these relatively high-Fe, low-Zn waters.

On a shorter timescale, growing anthropogenic nitrogen input to the ocean relative to phosphorus could result in more prevalent oceanic phosphorus deficiency. Corresponding iron inputs might then serve as an important control on phosphorus availability for microbes in these regions.

 

Authors:

Tom Browning (GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany)
Eric Achterberg (GEOMAR) 
Jaw Chuen Yong (GEOMAR)
Insa Rapp (GEOMAR)
Caroline Utermann (GEOMAR) 
Anja Engel (GEOMAR)
Mark Moore (Ocean and Earth Science, University of Southampton, Southampton, UK)

 

Sinking particles as biogeochemical hubs for trace metal cycling and release

Posted by mmaheigan 
· Thursday, September 14th, 2017 

The extent to which the return of major and minor elements to the dissolved phase in the deep ocean (termed remineralization) is decoupled plays a major role in setting patterns of nutrient limitation in the global ocean. It is well established that major elements such as phosphorus, silicon, and carbon are released at different rates from sinking particles, with major implications for nutrient recycling. Is this also the case for trace metals?

A recent publication by Boyd et al. in Nature Geoscience provides new insights into the biotic and abiotic processes that drive remineralization of metals in the ocean.  Particle composition changes rapidly with depth with both physical (disaggregation) and biogeochemical (grazing; desorption) processes leading to a marked decrease in the total surface area of the particle population. The proportion of lithogenic metals in sinking particles also appears to increase with depth, as the biogenic metals may be more labile and hence more readily removed.

Findings from GEOTRACES process studies revealed that release rates for trace elements such as iron, nickel, and zinc vary from each other. Microbes play a key role in determining the turnover rates for nutrients and trace elements. Decoupling of trace metal recycling in the surface ocean and below may result from their preferential removal by microbes to satisfy their nutritional requirements. In addition, the chemistry operating on particle surfaces plays a pivotal role in determining the specific fates of each trace metal. Teasing apart these factors will take time, as there is a complex interplay between chemical and biological processes. Improving our understanding is crucial, as these processes are not currently well represented by state-of-the-art ocean biogeochemical models.

Figure caption: Rapid changes in the characteristics of sinking particles over the upper 200 m as evidenced by: a) differential release of trace metals from sinking diatoms; b) changes in proportion of lithogenic versus biogenic materials; and c) ten-fold decrease in total particle surface area.

 

Authors:
Philip Boyd (IMAS, Australia)
Michael Ellwood (ANU, Australia)
Alessandro Tagliabue (Liverpool, UK)
Ben Twining (Bigelow, USA)

 

Relevant links:
GEOTRACES Digest: Iron Superstar

Joint workshop with GEOTRACES in August 2016: Biogeochemical Cycling of Trace Elements within the Ocean

Do rivers supply nutrients to the open ocean?

Posted by mmaheigan 
· Wednesday, May 24th, 2017 

Rivers carry large amounts of nutrients (e.g., nitrogen and phosphorus) to the sea, but we do not know how much of that riverine nutrient supply escapes biological and chemical processing in shallow coastal waters to reach the open ocean. Most global ocean biogeochemical models, which are typically unable to resolve coastal processes, assume that either all or none of the riverine nutrients entering coastal waters actually contribute to open ocean processes.

While we know a good deal about the dynamics of individual rivers entering the coastal ocean, studies to date have been limited to a few major river systems, mainly in in developed countries. Globally, there are over 6,000 rivers entering the coastal ocean. In a recent study, Sharples et al (2017) devised a simple approach to obtain a global-scale estimate of riverine nutrient inputs based on the knowledge that low-salinity waters entering the coastal ocean tend to form buoyant plumes that turn under the influence of Earth’s daily rotation to flow along the coastline. Using published data on such flows and incorporating the effect of Earth’s rotation, they obtained estimates of typical cross-shore plume width and compared them to the local width of the continental shelf. This was used to calculate the residence time of riverine nutrients on the shelf, which is the key to estimating how much of a given nutrient is consumed in shelf waters vs. how much is exported to the open ocean.

Global distribution of the amount of riverine dissolved inorganic nitrogen that escapes the continental shelf to reach the open ocean.

The results indicate that, on a global scale, 75% (80%) of the nitrogen (phosphorus) supplied by rivers reaches the open ocean, whereas 25% (20%) of the nitrogen (phosphorus) is consumed on the shelf (e.g., fueling coastal productivity). Limited knowledge of nutrient cycling and consumption in shelf waters represents the primary source of uncertainty in this study. However, well-defined global patterns related to human land use (e.g., agricultural fertilizer use in developed nations) emerged from this analysis, underscoring the need to understand how land-use changes and other human activities will alter nutrient delivery to the coastal ocean in the future.

 

Authors:
Jonathan Sharples (School of Environmental Sciences, University of Liverpool, UK)
Jack Middelburg (Department of Earth Sciences, Utrecht University, Netherlands)
Katja Fennel (Department of Oceanography, Dalhousie University, Canada)
Tim Jickells (School of Environmental Sciences, University of East Anglia, UK)

Filter by Keyword

abundance acidification africa air-sea interactions alkalinity allometry ammonium AMOC anoxia anoxic Antarctic anthropogenic carbon aragonite saturation arctic arsenic Atlantic Atlantic modeling atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria BATS benthic bgc argo bioavailability biogeochemical cycles biogeochemical models biogeochemistry biological pump biological uptake biophysics bloom blooms blue carbon bottom water boundary layer buffer capacity CaCO3 calcification calcite carbon-climate feedback carbon-sulfur coupling carbon cycle carbon dioxide carbon sequestration Caribbean CCA CCS changing marine ecosystems changing ocean chemistry chemoautotroph chesapeake bay chl a chlorophyll circulation climate change CO2 coastal darkening coastal ocean cobalt Coccolithophores community composition conservation cooling effect copepod coral reefs currents cyclone DCM decomposers decomposition deep convection deep ocean deep sea coral deoxygenation depth diagenesis diatoms DIC diel migration dimethylsulfide dinoflagellate dissolved inorganic carbon dissolved organic carbon DOC DOM domoic acid dust DVM earth system models ecosystem state eddy Education Ekman transport emissions ENSO enzyme equatorial regions error ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export EXPORTS extreme events extreme weather events faecal pellets filter feeders filtration rates fire fish Fish carbon fisheries floats fluid dynamics fluorescence food webs forams freshening freshwater frontal zone functional role future oceans geochemistry geoengineering GEOTRACES glaciers gliders global carbon budget global warming go-ship grazing greenhouse gas Greenland groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact hurricane hydrothermal hypoxia ice age ice cores ice cover industrial onset inverse circulation iron iron fertilization isotopes jellies katabatic winds kelvin waves krill kuroshio land-ocean continuum larvaceans lateral transport LGM lidar ligands light light attenuation mangroves marine heatwave marine snowfall marshes Mediterranean meltwater mesopelagic mesoscale metagenome metals methane microbes microlayer microorganisms microscale microzooplankton midwater mixed layer mixed layers mixotrophy modeling mode water molecular diffusion MPT multi-decade NASA NCP net community production new technology nitrate nitrogen nitrogen fixation nitrous oxide north atlantic north pacific nutricline nutrient budget nutrient cycling nutrient limitation nutrients OA ocean-atmosphere ocean acidification ocean carbon uptake and storage ocean color ocean observatories ODZ oligotrophic omics OMZ open ocean optics organic particles overturning circulation oxygen pacific paleoceanography particle flux pCO2 PDO peat pelagic pH phenology phosphorus photosynthesis physical processes physiology phytoplankton plankton POC polar regions pollutants prediction primary productivity Prochlorococcus proteins pteropods pycnocline radioisotopes remineralization remote sensing residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satell satellite scale seafloor seagrass sea ice sea level rise seasonal patterns sea spray seaweed sediments sensors shelf system shells ship-based observations shorelines silicate sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST subduction submesoscale subpolar subtropical sulfate surface surface ocean Synechococcus teleconnections temperate temperature temporal covariations thermocline thermohaline thorium tidal time-series time of emergence top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport volcano water clarity water quality western boundary currents wetlands winter mixing zooplankton

Copyright © 2021 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.