Archive for methods

Want to improve the spatiotemporal coverage of coastal water clarity? This approach combines high-resolution satellite data with low-cost in situ methods

Posted by mmaheigan 
· Friday, December 1st, 2023 

To maintain marine ecosystem health and human well-being, it is important to understand coastal water quality changes. Water clarity is a key­ component of water quality, which can be measured in situ by tools such as Secchi disks or by satellites with high spatial and temporal coverage. Coastal environments pose unique challenges to remote sensing, sometimes resulting in inaccurate estimates of water clarity.

Figure caption: Maps of model-corrected Landsat-8 derived Secchi depths from monthly clear sky images (2019–2021).

In this study, we couple low-cost in situ methods (Secchi disk depths) with open-access, high-resolution satellite (Landsat-8 and Sentinel-2) data to improve estimates of water clarity in a shallow, turbid lagoon in Virginia, USA. Our model allows the retrieval of water clarity data across an entire water body and when field measurements are unavailable. This approach can be implemented in dynamic coastal water bodies with limited in situ measurements (e.g., as part of routine water quality monitoring). This can improve our understanding of water clarity changes and their drivers to better predict how water quality may change in the future. Improved water clarity predictions can lead to better coastal ecosystem management and human well-being.

Figure caption: Workflow for obtaining Secchi disk depth with l2gen in NASA SeaDAS, bio-optical algorithms, and empirical adjustments.

Authors
Sarah E. Lang (University of Rhode Island’s Graduate School of Oceanography)
Kelly M.A. Luis (Jet Propulsion Laboratory, California Institute of Technology)
Scott C. Doney (University of Virginia)
Olivia Cronin-Golomb (University of Virginia)
Max C.N. Castorani (University of Virginia)

 

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Exploiting phytoplankton as a biosensor for nutrient limitation

Posted by mmaheigan 
· Wednesday, September 15th, 2021 

In the surface ocean, phytoplankton growth is often limited by a scarcity of key nutrients such as nitrogen, phosphorus, and iron. While this is important, there are methodological and conceptual difficulties in characterizing these nutrient limitations.

A recent paper published in Science Magazine leveraged a global metagenomic dataset from Bio-GO-SHIP to address these challenges. The authors characterized the abundance of genes that confer adaptations to nutrient limitation within the picocyanobacteria Prochlorococcus. Using the relative abundance of these genes as an indicator of nutrient limitation allowed the authors to capture expected regions of nutrient limitation, and novel regions that had not previously been studied. This gene-derived indicator of nutrient limitation matched previous methods of assessing nutrient limitation, such as bottle incubation experiments.

These findings have important implications for the global ocean. Characterizing the impact of nutrient limitation on primary production is especially critical in light of future stratification driven by climate change. In addition, this novel methodological approach allows scientists to use microbial communities as an eco-genomic biosensor of adaptation to changing nutrient regimes. For instance, future studies of coastal microbes or other ecosystems may help communities and environmental managers better understand how local microbial populations are adapting to climate change.

 

Watch an illustrated video overview of this research

Authors:
Lucas J. Ustick, Alyse A. Larkin, Catherine A. Garcia, Nathan S. Garcia, Melissa L. Brock, Jenna A. Lee, Nicola A. Wiseman, J. Keith Moore, Adam C. Martiny
(all University of California, Irvine)

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