Archive for proteins

Diatoms commit iron piracy with stolen bacterial gene

Posted by mmaheigan 
· Tuesday, February 4th, 2020 

Since diatoms carry out much of the primary production in iron-limited marine environments, constraining the details of how these phytoplankton acquire the iron they need is paramount to our understanding of biogeochemical cycles of iron-depleted high-nutrient low-chlorophyll (HNLC) regions. The proteins involved in this process are largely unknown, but McQuaid et al. (2018) scientists described a carbonate-dependent uptake protein that enables diatoms to access inorganic iron dissolved in seawater. As increasing atmospheric CO2 results in decreased seawater carbonate ion concentrations, this iron uptake strategy may have an uncertain future. In a recent study published in PNAS, authors used CRISPR technology to characterize a parallel uptake system that requires no carbonate and is therefore not impacted by ocean acidification.

This system targets an organically complexed form of iron (siderophores, molecules that bind and transport iron in microorganisms) that is only produced by co-occurring microbes. Two genes are required to convert siderophores from a potent toxicant to an essential nutrient. One of these (FBP1) is a receptor that was horizontally acquired from siderophore-producing bacteria. The other (FRE2) is a eukaryotic reductase that facilitates the dissociation of Fe-siderophore complexes.

Figure caption: (A) Growth curves of diatom cultures ( • = WT, ◇ = ΔFBP1, ☐ = ΔFRE2) in low iron media. (B) Growth in same media with siderophores added. (C) Diatoms under 1000x magnification, brightfield. (D) mCherry-FBP1. (E) Plastid autofluorescence. (F) YFP-FRE2. (G) Phylogenetic tree of FBP1 and related homologs.

Are diatoms really stealing siderophores from hapless bacteria? The true nature of this interaction is unknown and may at times be mutualistic. For example, when iron availability limits the carbon supply to a microbial community, heterotrophic bacteria may benefit from using siderophores to divert iron to diatom companions. Further work is needed to understand the true ecological basis for this interaction, but these results suggest that as long as diatoms and bacteria co-occur, iron limitation in marine ecosystems will not be exacerbated by ocean acidification.

Authors:
Tyler Coale (Scripps Institution of Oceanography, J.Craig Venter Institute)
Mark Moosburner (Scripps Institution of Oceanography, J.Craig Venter Institute)
Aleš Horák (Biology Centre CAS, Institute of Parasitology, University of South Bohemia)
Miroslav Oborník (Biology Centre CAS, Institute of Parasitology, University of South Bohemia)
Katherine Barbeau (Scripps Institution of Oceanography)
Andrew Allen (Scripps Institution of Oceanography, J.Craig Venter Institute)

Also see joint post on the GEOTRACES website

Filter by Keyword

abundance acidification africa air-sea interactions alkalinity allometry ammonium AMOC anoxia anoxic Antarctic anthropogenic carbon aragonite saturation arctic arsenic Atlantic Atlantic modeling atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria BATS benthic bgc argo bioavailability biogeochemical cycles biogeochemical models biogeochemistry biological pump biological uptake biophysics bloom blooms blue carbon bottom water boundary layer buffer capacity CaCO3 calcification calcite carbon-climate feedback carbon-sulfur coupling carbon cycle carbon dioxide carbon sequestration Caribbean CCA CCS changing marine ecosystems changing ocean chemistry chemoautotroph chl a chlorophyll circulation climate change CO2 coastal ocean cobalt Coccolithophores community composition conservation cooling effect copepod coral reefs currents cyclone DCM decomposers decomposition deep convection deep ocean deep sea coral deoxygenation depth diagenesis diatoms DIC diel migration dimethylsulfide dissolved inorganic carbon dissolved organic carbon DOC DOM domoic acid dust DVM earth system models eddy Education Ekman transport emissions ENSO enzyme equatorial regions error ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export EXPORTS extreme weather events faecal pellets filter feeders filtration rates fish Fish carbon fisheries floats fluid dynamics fluorescence food webs forams freshening freshwater frontal zone future oceans geochemistry geoengineering GEOTRACES glaciers gliders global carbon budget global warming go-ship grazing greenhouse gas Greenland groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact hydrothermal hypoxia ice age ice cores ice cover industrial onset inverse circulation iron iron fertilization isotopes jellies katabatic winds kelvin waves krill kuroshio land-ocean continuum larvaceans lateral transport lidar ligands light light attenuation mangroves marine heatwave marine snowfall marshes Mediterranean meltwater mesopelagic mesoscale metagenome metals methane microbes microlayer microorganisms microscale microzooplankton midwater mixed layer mixed layers mixotrophy modeling mode water molecular diffusion MPT multi-decade NASA NCP net community production new technology nitrate nitrogen nitrogen fixation nitrous oxide north atlantic north pacific nutricline nutrient budget nutrient cycling nutrient limitation nutrients OA ocean-atmosphere ocean acidification ocean carbon uptake and storage ocean color ocean observatories ODZ oligotrophic omics OMZ open ocean optics organic particles overturning circulation oxygen pacific paleoceanography particle flux pCO2 PDO peat pelagic pH phenology phosphorus photosynthesis physical processes physiology phytoplankton plankton POC polar regions pollutants prediction primary productivity Prochlorococcus proteins pteropods pycnocline radioisotopes remineralization remote sensing residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satell satellite scale seafloor seagrass sea ice sea level rise seasonal patterns seaweed sediments sensors shelf system shells ship-based observations silicate sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST subduction submesoscale subpolar subtropical surface surface ocean Synechococcus teleconnections temperate temperature temporal covariations thermocline thermohaline thorium tidal time-series time of emergence top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport volcano water quality western boundary currents wetlands winter mixing zooplankton

Copyright © 2021 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.