Ocean Carbon & Biogeochemistry
Studying marine ecosystems and biogeochemical cycles in the face of environmental change
  • Home
  • About OCB
    • About Us
    • Scientific Breadth
      • Biological Pump
      • Changing Marine Ecosystems
      • Changing Ocean Chemistry
      • Estuarine and Coastal Carbon Fluxes
      • Ocean Carbon Uptake and Storage
      • Ocean Observatories
    • Code of Conduct
    • Get Involved
    • Project Office
    • Scientific Steering Committee
    • OCB committees
      • Ocean Time-series
      • US Biogeochemical-Argo
      • Ocean-Atmosphere Interaction
  • Activities
    • Summer Workshop
    • OCB Webinars
    • Guidelines for OCB Workshops & Activities
    • Topical Workshops
      • CMIP6 Models Workshop
      • Coastal BGS Obs with Fisheries
      • C-saw extreme events workshop
      • Expansion of BGC-Argo and Profiling Floats
      • Fish, fisheries and carbon
      • Future BioGeoSCAPES program
      • GO-BCG Scoping Workshop
      • Lateral Carbon Flux in Tidal Wetlands
      • Leaky Deltas Workshop – Spring 2025
      • Marine CDR Workshop
      • Ocean Nucleic Acids ‘Omics
      • Pathways Connecting Climate Changes to the Deep Ocean
    • Small Group Activities
      • Aquatic Continuum OCB-NACP Focus Group
      • Arctic-COLORS Data Synthesis
      • BECS Benthic Ecosystem and Carbon Synthesis WG
      • Carbon Isotopes in the Ocean Workshop
      • CMIP6 WG
      • Filling the gaps air–sea carbon fluxes WG
      • Fish Carbon WG
      • Meta-eukomics WG
      • mCDR
      • Metaproteomic Intercomparison
      • Mixotrophs & Mixotrophy WG
      • N-Fixation WG
      • Ocean Carbonate System Intercomparison Forum
      • Ocean Carbon Uptake WG
      • OOI BGC sensor WG
      • Operational Phytoplankton Observations WG
      • Phytoplankton Taxonomy WG
    • Other Workshops
    • Science Planning
      • Coastal CARbon Synthesis (CCARS)
      • North Atlantic-Arctic
    • Ocean Acidification PI Meetings
    • Training Activities
      • PACE Hackweek 2025
      • PACE Hackweek 2024
      • PACE Training Activity 2022
  • Science Support
    • Data management and archival
    • Early Career
    • Funding Sources
    • Jobs & Postdocs
    • Meeting List
    • OCB Topical Websites
      • Ocean Fertilization
      • Trace gases
      • US IIOE-2
    • Outreach & Education
    • Promoting your science
    • Student Opportunities
    • OCB Activity Proposal Solicitations
      • Guidelines for OCB Workshops & Activities
    • Travel Support
  • Publications
    • OCB Workshop Reports
    • Science Planning and Policy
    • Newsletter Archive
  • Science Highlights
  • News

Archive for boundary layer

What really controls deep-seafloor calcite dissolution?

Posted by mmaheigan 
· Monday, December 16th, 2019 

On time scales of tens to millions of years, seawater acidity is primarily controlled by biogenic calcite (CaCO3) dissolution on the seafloor. Our quantitative understanding of future oceanic pH and carbonate system chemistry requires knowledge of what controls this dissolution. Past experiments on the dissolution rate of suspended calcite grains have consistently suggested a high-order, nonlinear dependence on undersaturation that is independent of fluid flow rate. This form of kinetics has been extensively adopted in models of deep-sea calcite dissolution and pH of benthic sediments. However, stirred-chamber and rotating-disc dissolution experiments have consistently demonstrated linear kinetics of dissolution and a strong dependence on fluid flow velocity. This experimental discrepancy surrounding the kinetic control of seafloor calcite dissolution precludes robust predictions of oceanic response to anthropogenic acidification.

In a recent study published in Geochimica et Cosmochimica Acta, authors have reconciled these divergent experimental results through an equation for the mass balance of the carbonate ion at the sediment-water interface (SWI), which equates the rate of production of that ion via dissolution and its diffusion in sediment porewaters to the transport across the diffusive sublayer (DBL) at the SWI. If the rate constant derived from suspended-grain experiments is inserted into this balance equation, the rate of carbonate ion supply to the SWI from the sediment (sediment-side control) is much greater in the oceans than the rate of transfer across the DBL (water-side control). Thus, calcite dissolution at the seafloor, while technically under mixed control, is strongly water-side dominated. Consequently, a model that neglects boundary-layer transport (sediment-side control alone) invariably predicts CaCO3-versus-depth profiles that are too shallow compared to available data (Figure 1). These new findings will inform future attempts to model the ocean’s response to acidification.

Figure 1: Plots of the calcite (CaCO3) content of deep-sea sediments as a function of oceanic depth. Left panel: data from the Northwestern Atlantic Ocean. Right panel: data from the Southwest Pacific Ocean. The blue line represents predicted CaCO3 content assuming no boundary-layer effects (pure sediment-side control). The red line is the prediction that includes both sediment and water effects (mixed control), and the green line is the prediction with pure water-side control. The agreement between the red and green lines signifies that calcite dissolution is essentially water-side controlled at the seafloor. These results are duplicated for all tested regions of the oceans.

Authors:
Bernard P. Boudreau (Dalhousie University)
Olivier Sulpis (University of Utrecht)
Alfonso Mucci (McGill University)

Improved method to identify and reduce uncertainties in marine carbon cycle predictions

Posted by mmaheigan 
· Wednesday, September 26th, 2018 

Improved method to identify and reduce uncertainties in marine carbon cycle predictions

How well do contemporary Earth System Models (ESMs) represent the dynamics of the modern day ocean? Often we question the fidelity of biological and chemical processes represented in these ESMs. The fact is representations of biogeochemical processes in models are plagued with some degree of uncertainties; therefore, identifying and reducing such deficiencies could advance ESM development and improve model predictions.

An overview of several models with respect to each of the variables, using absolute (left) and relative (right) scores to determine the degree of uncertainty in relation to referenced datasets.

 

A recent publication in Atmosphere described the ongoing efforts to develop the International Ocean Model Benchmarking (IOMB) package to evaluate ESM skill sets in simulating marine biogeochemical variables and processes. Model performances were scored based on how well they captured the distribution and variability contained in high-quality observational datasets. The authors highlighted systematic model–data benchmarking as a technique to identify ocean model deficiencies, which could provide a pathway to improving representations of sub-grid-scale parameterizations. They have scaled the absolute score from zero to unity, where the red color tends toward zero to quantify weaknesses in the skill set of a particular model in capturing values from the observational datasets. On the other side of the spectrum, the green color signifies considerable temporal and spatial overlap between the predicted and the observational values. The authors also present the standard score to show the relative scores within two standard deviations from the model mean. The benchmarking package was employed in the published study to assess marine biogeochemical process representations, with a focus on surface ocean concentrations and sea–air fluxes of dimethylsulfide (DMS). The production and emission of natural aerosols remain one of the major limitations in estimating global radiative forcing. Appropriate representation of aerosols in the marine boundary layer (MBL) is essential to reduce uncertainty and provide reliable information on offsets to global warming. Results show that model–data biases increased as DMS enters the MBL, with models over-predicting sea surface concentrations in the productive region of the eastern tropical Pacific by almost a factor of two and the sea–air fluxes by a factor of three. The associated uncertainties with oceanic carbon cycle processes may be additive or antagonistic; in any case, a constructive effort to disentangle the subtleties begins with an objective benchmarking effort, which is focused specifically on marine biogeochemical processes. The tool in development will ensure we satisfy some of the Model Intercomparison Project (MIP) benchmarking needs for the sixth phase of Coupled Model Intercomparison Project (CMIP6).

 

Authors:
Oluwaseun Ogunro (ORNL)
Scott Elliott (LANL)
Oliver Wingenter (New Mexico Tech)
Clara Deal (University of Alaska)
Weiwei Fu (UC Irvine)
Nathan Collier (ORNL)
Forrest M. Hoffman (ORNL)

Filter by Keyword

abundance acidification additionality advection africa air-sea air-sea interactions algae alkalinity allometry ammonium AMO AMOC anoxic Antarctic Antarctica anthro impacts anthropogenic carbon anthropogenic impacts appendicularia aquaculture aquatic continuum aragonite saturation arctic Argo argon arsenic artificial seawater Atlantic atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms bacteria bathypelagic BATS BCG Argo benthic bgc argo bio-go-ship bio-optical bioavailability biogeochemical cycles biogeochemical models biogeochemistry Biological Essential Ocean Variables biological pump biophysics bloom blue carbon bottom water boundary layer buffer capacity C14 CaCO3 calcification calcite carbon carbon-climate feedback carbon-sulfur coupling carbonate carbonate system carbon budget carbon cycle carbon dioxide carbon export carbon fluxes carbon sequestration carbon storage Caribbean CCA CCS changing marine chemistry changing marine ecosystems changing marine environments changing ocean chemistry chemical oceanographic data chemical speciation chemoautotroph chesapeake bay chl a chlorophyll circulation CO2 coastal and estuarine coastal darkening coastal ocean cobalt Coccolithophores commercial community composition competition conservation cooling effect copepod copepods coral reefs CTD currents cyclone daily cycles data data access data assimilation database data management data product Data standards DCM dead zone decadal trends decomposers decomposition deep convection deep ocean deep sea coral denitrification deoxygenation depth diatoms DIC diel migration diffusion dimethylsulfide dinoflagellate dinoflagellates discrete measurements distribution DOC DOM domoic acid DOP dust DVM ecology economics ecosystem management ecosystems eddy Education EEZ Ekman transport emissions ENSO enzyme equatorial current equatorial regions ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export export fluxes export production extreme events faecal pellets fecal pellets filter feeders filtration rates fire fish Fish carbon fisheries fishing floats fluid dynamics fluorescence food webs forage fish forams freshening freshwater frontal zone functional role future oceans gelatinous zooplankton geochemistry geoengineering geologic time GEOTRACES glaciers gliders global carbon budget global ocean global warming go-ship grazing greenhouse gas greenhouse gases Greenland ground truthing groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact human well-being hurricane hydrogen hydrothermal hypoxia ice age ice cores ice cover industrial onset inland waters in situ inverse circulation ions iron iron fertilization iron limitation isotopes jellies katabatic winds kelvin waves krill kuroshio lab vs field land-ocean continuum larvaceans lateral transport LGM lidar ligands light light attenuation lipids low nutrient machine learning mangroves marine carbon cycle marine heatwave marine particles marine snowfall marshes mCDR mechanisms Mediterranean meltwater mesopelagic mesoscale mesoscale processes metagenome metals methane methods microbes microlayer microorganisms microplankton microscale microzooplankton midwater mitigation mixed layer mixed layers mixing mixotrophs mixotrophy model modeling model validation mode water molecular diffusion MPT MRV multi-decade n2o NAAMES NCP nearshore net community production net primary productivity new ocean state new technology Niskin bottle nitrate nitrogen nitrogen cycle nitrogen fixation nitrous oxide north atlantic north pacific North Sea nuclear war nutricline nutrient budget nutrient cycles nutrient cycling nutrient limitation nutrients OA observations ocean-atmosphere ocean acidification ocean acidification data ocean alkalinity enhancement ocean carbon storage and uptake ocean carbon uptake and storage ocean color ocean modeling ocean observatories ocean warming ODZ oligotrophic omics OMZ open ocean optics organic particles oscillation outwelling overturning circulation oxygen pacific paleoceanography PAR parameter optimization parasite particle flux particles partnerships pCO2 PDO peat pelagic PETM pH phenology phosphate phosphorus photosynthesis physical processes physiology phytoplankton PIC piezophilic piezotolerant plankton POC polar polar regions policy pollutants precipitation predation predator-prey prediction pressure primary productivity Prochlorococcus productivity prokaryotes proteins pteropods pycnocline radioisotopes remineralization remote sensing repeat hydrography residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satellite scale seafloor seagrass sea ice sea level rise seasonal seasonality seasonal patterns seasonal trends sea spray seawater collection seaweed secchi sediments sensors sequestration shelf ocean shelf system shells ship-based observations shorelines siderophore silica silicate silicon cycle sinking sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST state estimation stoichiometry subduction submesoscale subpolar subtropical sulfate surf surface surface ocean Synechococcus technology teleconnections temperate temperature temporal covariations thermocline thermodynamics thermohaline thorium tidal time-series time of emergence titration top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trawling Tris trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport warming water clarity water mass water quality waves weathering western boundary currents wetlands winter mixing zooplankton

Copyright © 2025 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.