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Archive for New OCB Research – Page 12

Water clarity impacts temperature and biogeochemistry in Chesapeake Bay

Posted by mmaheigan

· Thursday, December 3rd, 2020

Estuarine water clarity is determined by suspended materials in the water, including colored dissolved organic matter, phytoplankton, sediment, and detritus. These constituents directly affect temperature because when water is opaque, sunlight heats only the shallowest layers near the surface, but when water is clear, sunlight can penetrate deeper, warming the waters below the surface. Despite the importance of accurately predicting temperature variability, many numerical modeling studies do not adequately parameterize this fundamental relationship between water clarity and temperature.

In a recent study published in Estuaries and Coasts, the authors quantified the impact of a more realistic representation of water clarity in a hydrodynamic-biogeochemical model of the Chesapeake Bay by comparing two simulations: (1) water clarity is constant in space and time for the calculation of solar heating vs. (2) water clarity varies with modeled concentrations of light-attenuating materials. In the variable water clarity simulation (2), the water is more opaque, particularly in the northern region of the Bay. During the spring and summer months, the lower water clarity in the northern Bay is associated with warmer surface temperatures and colder bottom temperatures. Warmer surface temperatures encourage phytoplankton growth and nutrient uptake near the head of the Bay, thus fewer nutrients are transported downstream. These conditions are exacerbated during high-river flow years, when differences in temperature, nutrients, phytoplankton, and zooplankton extend further seaward.

Figure 1: Top row: Difference in the light attenuation coefficient for shortwave heating, kh[m-1] (variable minus constant light attenuation simulation). June, July, and August average for (A) 2001, (B) average of 2001-2005, and (C) 2003; difference in bottom temperatures [oC] (variable minus constant). Bottom row: Difference in June, July, and August average bottom temperature for (D) 2001, (E) average of 2001-2005, and (F) 2003. Data for 2001 are representative of low river discharge, and 2003 are representative high river discharge years.

This work demonstrates that a constant light attenuation scheme for heating calculations in coupled hydrodynamic-biogeochemical models underestimates temperature variability, both temporally and spatially. This is an important finding for researchers who use models to predict future temperature variability and associated impacts on biogeochemistry and species habitability.

Authors:
Grace E. Kim (NASA, Goddard Space Flight Center)
Pierre St-Laurent (VIMS, William & Mary)
Marjorie A.M. Friedrichs (VIMS, William & Mary)
Antonio Mannino (NASA, Goddard Space Flight Center)

Tiny phytoplankton seen from space

Posted by mmaheigan

· Thursday, November 19th, 2020

Picophytoplankton, the smallest phytoplankton on Earth, are dominant in over half of the global surface ocean, growing in low-nutrient “ocean deserts” where diatoms and other large phytoplankton have difficult to thrive. Despite their small size, picophytoplankton collectively account for well over 50% of primary production in oligotrophic waters, thus playing a major role in sustaining marine food webs.

In a recent paper published in Optics Express, the authors use satellite-detected ocean color (namely remote-sensing reflectance, R_rs(λ)) and sea surface temperature to estimate the abundance of the three picophytoplankton groups—the cyanobacteria Prochlorococcus and Synechococcus, and autotrophic picoeukaryotes. The authors analysed R_rs(λ) spectra using principal component analysis, and principal component scores and SST were used in the predictive models. Then, they trained and independently evaluated the models with in-situ data from the Atlantic Ocean (Atlantic Meridional Transect cruises). This approach allows for the satellite detection of the succession of species across ocean oligotrophic ecosystem boundaries, where these cells are most abundant (Figure 1).

Figure 1. Cell abundances of the three major picophytoplankton groups (the cyanobacteria Prochlorococcus and Synechococcus, and a collective group of autotrophic picoeukaryotes) in surface waters of the Atlantic Ocean. Abundances are shown for the dominant group in terms of total biovolume (converted from cell abundance).

Since these organisms can be used as proxies for marine ecosystem boundaries, this method can be used in studies of climate and ecosystem change, as it allows a synoptic observation of changes in picophytoplankton distributions over time and space. For exploring spectral features in hyperspectral R_rs(λ) data, the implementation of this model using data from future hyperspectral satellite instruments such as NASA PACE’s Ocean Color Instrument (OCI) will extend our knowledge about the distribution of these ecologically relevant phytoplankton taxa. These observations are crucial for broad comprehension of the effects of climate change in the expansion or shifts in ocean ecosystems.

Authors:
Priscila K. Lange (NASA Goddard Space Flight Center / Universities Space Research Association / Blue Marble Space Institute of Science)
Jeremy Werdell (NASA Goddard Space Flight Center)
Zachary K. Erickson (NASA Goddard Space Flight Center)
Giorgio Dall’Olmo (Plymouth Marine Laboratory)
Robert J. W. Brewin (University of Exeter)
Mikhail V. Zubkov (Scottish Association for Marine Science)
Glen A. Tarran (Plymouth Marine Laboratory)
Heather A. Bouman (University of Oxford)
Wayne H. Slade (Sequoia Scientific, Inc)
Susanne E. Craig (NASA Goddard Space Flight Center / Universities Space Research Association)
Nicole J. Poulton (Bigelow Laboratory for Ocean Sciences)
Astrid Bracher (Alfred-Wegener-Institute Helmholtz Center for Polar and Marine Research / University of Bremen)
Michael W. Lomas (Bigelow Laboratory for Ocean Sciences)
Ivona Cetinić (NASA Goddard Space Flight Center / Universities Space Research Association)

A new Regional Earth System Model of the Mediterranean Sea biogeochemical dynamics

Posted by mmaheigan

· Thursday, November 19th, 2020

The Mediterranean Sea is a semi-enclosed mid-latitude oligotrophic basin with a lower net primary production than the global ocean. A west-east productivity trophic gradient results from the superposition of biogeochemical and physical processes, including the biological pump and associated carbon and nutrient (nitrogen, phosphorus) fluxes, the spatial asymmetric distribution of nutrient sources (rivers, atmospheric deposition, coastal upwelling, etc.), the estuarine inverse circulation associated with the inflow of Atlantic water through the Gibraltar Strait. The complex and highly variable interface between land and sea throughout this basin add a further layer of complexity in the Mediterranean oceanic and atmospheric circulation and on the associated biogeochemistry dynamics, emphasizing the need for high-resolution truly integrated Regional Earth System Models to track and understand fine-scale processes and ecosystem dynamics.

In a recent paper published in the Journal of Advances in Modeling Earth System, the authors introduced a new version of the Regional Earth System model RegCM-ES and evaluated its performance in the Mediterranean region. RegCM-ES fully integrates the regional climate model RegCM4, the land surface scheme CLM4.5 (Community Land Model), the river routing model HD (Hydrological Discharge Model), the ocean model MITgcm (MIT General Circulation model) and the Biogeochemical Flux Model BFM.

A comparison with available observations has shown that RegCM-ES was able to capture the mean climate of the region and to reproduce horizontal and vertical patterns of chlorophyll-a and PO₄(the limiting nutrient in the basin) (Figure 1). The same comparison revealed a systematic underestimation of simulated dissolved oxygen (which will be fixed by the use of a new parametrization of oxygen solubility), and an overestimation of NO₃, possibly due to uncertainties in initial and boundary conditions (mostly traced to river and Dardanelles nutrient discharges) and an overly vigorous vertical mixing simulated by the ocean model in some parts of the Basin.

Figure.1 Distributions of chlorophyll-a mg/m³ (top) and PO₄ mmol/m³ (bottom) in the Mediterranean Sea as simulated by RegCM-ES.

Overall, this analysis has demonstrated that RegCM-ES has the capabilities required to become a powerful tool for studying regional dynamics and impacts of climate change on the Mediterranean Sea and other ocean basins around the world.

Authors:
Marco Reale (Abdus Salam International Centre for theoretical physics-ICTP, National Institute of Oceanography and Experimental Geophysics-OGS)
Filippo Giorgi (Abdus Salam International Centre for theoretical physics-ICTP)
Cosimo Solidoro (National Institute of Oceanography and Experimental Geophysics-OGS)
Valeria Di Biagio (National Institute of Oceanography and Experimental Geophysics-OGS)
Fabio Di Sante (Abdus Salam International Centre for theoretical physics-ICTP)
Laura Mariotti (National Institute of Oceanography and Experimental Geophysics-OGS)
Riccardo Farneti (Abdus Salam International Centre for theoretical physics-ICTP)
Gianmaria Sannino (Italian National Agency for New Technologies, Energy and Sustainable Economic Development-ENEA)

Warming counteracts acidification in temperate crustose coralline algae communities

Posted by mmaheigan

· Friday, November 6th, 2020

Seawater carbonate chemistry has been altered by dramatic increases in anthropogenic CO₂ release and global temperatures, leading to significant changes in rocky shore habitats and the metabolism of most marine organisms. There has been recent interest in how these anthropogenic stresses affect crustose coralline algae (CCA) communities because CCA photosynthesis and calcification are directly influenced by seawater carbonate chemistry. CCA is a foundation species in temperate macroalgal communities, where species succession and rocky shore community structure are particularly susceptible to anthropogenic disturbance. In particular, the disappearance of turf and foliose macroalgae caused by climate change and herbivore pressure results in the dominance of CCA (Figure 1a).

Figure 1: (a) Examples of crustose coralline algae (CCA)-dominated seaweed bed in the East Sea of Korea showing barren ground dominated by CCA (bright white and pink color on the rock; see arrows) on a rocky subtidal zone grazed by sea urchins. (b) Specific growth rate of marginal encrusting area under future climate conditions.

In a recent study published in Marine Pollution Bulletin, the authors conducted a mesocosm experiment to investigate the sensitivity of temperate CCA Chamberlainium sp. to future climate stressors, as simulated by three experimental treatments: 1) Acidification: doubled CO₂; 2) Warming: +5ºC; and 3) Greenhouse: doubled CO₂ and +5ºC. After a 47-day acclimation period, when compared with present-day (control: 490 μatm and 20ºC) conditions, the Acidification treatment showed decreased photosynthesis rates of Chamberlainium sp, whereas the Warming treatment showed increased photosynthesis. The Acidification treatment also showed reduced encrusting growth rates relative to the Control, but when acidification was combined with warming in the Greenhouse treatment, encrusting growth rates increased substantially (Figure 1b). Taken together, these results suggest that the negative ecophysiological responses of Chamberlainium sp to acidification are ameliorated by elevated temperatures in a greenhouse world. In other words, if the foliose macroalgal community responses negatively in the greenhouse environment, the dominance of CCA will increase further, and the biodiversity of the algae community will be reduced.

Authors:
Ju-Hyoung Kim (Faculty of Marine Applied Biosciences, Kunsan National University)
Il-Nam Kim (Department of Marine Science, Incheon National University)

Timing matters: Correcting float-based measurements of diurnal oxygen variability

Posted by mmaheigan

· Friday, November 6th, 2020

Despite its fundamental importance to the global carbon cycle, climate, and marine ecosystems, oceanic primary production is grossly under-sampled. Autonomous platforms represent an important frontier for expanding measurements of marine primary productivity in time and space, but this requires the establishment of robust, standardized methods to obtain reliable data from these platforms. Using data from profiling floats deployed in the northern Gulf of Mexico, authors of a recent study published in Biogeosciences demonstrated, for the first time, that daily cycles of dissolved oxygen can be observed with Argo-type profiling floats. The floats were instructed to profile continuously, resulting in about one profile every three hours. The floats recorded data both on the ascent (upcast) and the descent (downcast). Adjacent casts showed hysteresis in gradient areas, i.e. a lag in the concentration measurement, due to the slow response time of oxygen sensors.

Figure 1: Example of raw oxygen measurements from a downcast (dark purple line) and an upcast (dark green line) and corrected profiles (lighter purple and green lines) in (a) density and (b) pressure coordinates. (c) Upcasts and downcasts (top 150 m) plotted against each other with raw data (purple) and data corrected according to the new method (red). (d) The root-mean-square difference (RMSD) between the upcast and downcast after correcting casts for a range of time constants (τ), showing an optimal τ value in this case of 76 s (red dot).

To correct for these measurement errors, the authors developed a method to determine sensor response time in situ, using an established process for correcting sensor response time errors. This method requires a timestamp associated with each observation. The response time parameter (τ) was determined by correcting consecutive profiles taken in opposite directions using a range of possible values and finding the minimum root-mean-square-difference between them (Figure 1). In light of these findings, future oxygen measurements from Argo floats should be transmitted with time stamps for a calibration period during which up- and downcasts are recorded to facilitate response time correction. The method developed here will contribute to more accurate measurement of dissolved oxygen, thus improving the quality of derived quantities such as primary productivity.

Authors
Christopher Gordon (Dalhousie University)
Katja Fennel (Dalhousie University)
Clark Richards (Fisheries and Oceans Canada)
Nick Shay (University of Miami)
Jodi Brewster (University of Miami)

Austral summer vertical migration patterns in Antarctic zooplankton

Posted by mmaheigan

· Thursday, October 15th, 2020

Sunrise and sunset are the main cues driving zooplankton diel vertical migration (DVM) throughout the world’s oceans. These marine animals balance the trade-off between feeding in surface waters at night and avoiding predation during the day at depth. Near-constant daylight during polar summer was assumed to dampen these daily migrations. In a recent paper published in Deep-Sea Research I, authors assessed austral summer DVM patterns for 15 taxa over a 9-year period. Despite up to 22 hours of sunlight, a diverse array of zooplankton – including copepods, krill, pteropods, and salps – continued DVM.

Figure caption: Mean day (orange) and night (blue) abundance of (A) the salp Salpa thompsoni, (B) the krill species Thysanoessa macrura, (C) the pteropod Limacina helicina, and (D) chaetognaths sampled at discrete depth intervals from 0-500m. Horizontal dashed lines indicate weighted mean depth (WMD). N:D is the night to day abundance ratio for 0-150 m. Error bars indicate one standard error. Sample size n = 12 to 22. Photos by Larry Madin, Miram Gleiber, and Kharis Schrage.

The Palmer Antarctica Long-Term Ecological Research (LTER) Program conducted this study using a MOCNESS (Multiple Opening/Closing Net and Environmental Sensing System) to collect depth-stratified samples west of the Antarctic Peninsula. The depth range of migrations during austral summer varied across taxa and with daylength and phytoplankton biomass and distribution. While most taxa continued some form of DVM, others (e.g., carnivores and detritivores) remained most abundant in the mesopelagic zone, regardless of photoperiod, which likely impacted the attenuation of vertical carbon flux. Given the observed differences in vertical distribution and migration behavior across taxa, ongoing changes in Antarctic zooplankton assemblages will likely impact carbon export pathways. More regional, taxon-specific studies such as this are needed to inform efforts to model zooplankton contributions to the biological carbon pump.

Authors:
John Conroy (VIMS, William & Mary)
Deborah Steinberg (VIMS, William & Mary)
Patricia Thibodeau (VIMS, William & Mary; currently University of Rhode Island)
Oscar Schofield (Rutgers University)

Marine heatwave implications for future phytoplankton blooms

Posted by mmaheigan

· Thursday, October 15th, 2020

Ocean temperature extreme events such as marine heatwaves are expected to intensify in coming decades due to anthropogenic warming. Although the effects of marine heatwaves on large plants and animals are becoming well documented, little is known about how these warming events will impact microbes that regulate key biogeochemical processes such as ocean carbon uptake and export, which represent important feedbacks on the global carbon cycle and climate.

Figure caption: Relationship between phytoplankton bloom response to marine heatwaves and background nitrate concentration in the 23 study regions. X-axis denotes the annual-mean sea-surface nitrate concentration based on the model simulation (1992-2014; OFAM3, blue) and the in situ climatology (WOA13, orange). Y-axis denotes the mean standardised anomalies (see Equation 1 of the paper) of simulated sea-surface phytoplankton nitrogen biomass (1992-2014; OFAM3, blue) and observed sea-surface chlorophyll a concentration (2002-2018; MODIS, orange) during the co-occurrence of phytoplankton blooms and marine heatwaves.

In a recent study published in Global Change Biology, authors combined model simulations and satellite observations in tropical and temperate oceanographic regions over recent decades to characterize marine heatwave impacts on phytoplankton blooms. The results reveal regionally‐coherent anomalies depicted by shallower surface mixed layers and lower surface nitrate concentrations during marine heatwaves, which counteract known light and nutrient limitation effects on phytoplankton growth, respectively (Figure 1). Consequently, phytoplankton bloom responses are mixed, but derive from the background nutrient conditions of a study region such that blooms are weaker (stronger) during marine heatwaves in nutrient-poor (nutrient-rich) waters.

Given the projected expansion of nutrient-poor waters in the 21st century ocean, the coming decades are likely to see an increased occurrence of weaker blooms during marine heatwaves, with implications for higher trophic levels and biogeochemical cycling of key elements.

Authors:
Hakase Hayashida (University of Tasmania)
Richard Matear (CSIRO)
Pete Strutton (University of Tasmania)

Chesapeake Bay acidification partially offset by submerged aquatic vegetation

Posted by mmaheigan

· Wednesday, September 30th, 2020

Ocean acidification is often enhanced by eutrophication and subsequent hypoxia and anoxia in coastal waters, which collectively threaten marine organisms and ecosystems. Acidification is particularly of concern for organisms that form shells and skeletons from calcium carbonate (CaCO₃) such as commercially important shellfish species. Given that CaCO₃ mineral dissolution can increase the total alkalinity of water and neutralize anthropogenic and metabolic CO₂, it is important to include CaCO₃ cycle in the coastal water acidification study. However, very few studies have linked CaCO₃ dissolution to the timing and location of its formation in coastal waters. A recent study from the Chesapeake Bay published in Nature Geoscience reveals the occurrence of a bay-wide pH-buffering mechanism resulting from spatially decoupled CaCO₃ mineral cycling (Figure 1). Photosynthesis by submerged aquatic vegetation at the head of the Bay and in other shallow, nearshore waters can remove nutrient pollution from the Bay, generate very high pH, and elevate the carbonate mineral saturation state (Figure 1). This facilitates the formation of CaCO₃ minerals, which are then transported downstream along with other biologically produced carbonate shells into acidic subsurface waters, where they dissolve. This dissolution of carbonate minerals helps “buffer” the water against pH decreases and even drive pH increases. This finding has great ecological and natural resource management significance, in that coastal nutrient management and reduction via the resurgence of submerged aquatic vegetation can help mitigate low oxygen and acidification stress for these environments and organisms.

Figure 1: Conceptual model of the self-regulated pH-buffering mechanism in the Chesapeake Bay. Calcium carbonate is formed within the high-pH submerged aquatic vegetation beds in shallow waters (top left and upper part of diagram, all Shoals with SAV), where it could be subsequently transported longitudinally and/or laterally into the deep main channel of the mid and lower bay (center) and upon dissolution, increase pH buffering capacity and alleviate coastal acidification (lower section).

Authors:
Jianzhong Su (University of Delaware, Xiamen University)
Wei-Jun Cai (University of Delaware)
Jean Brodeur (University of Delaware)
Baoshan Chen (University of Delaware)
Najid Hussain (University of Delaware)
Yichen Yao (University of Delaware)
Chaoying Ni (University of Delaware)
Jeremy Testa (University of Maryland Center for Environmental Science)
Ming Li (University of Maryland Center for Environmental Science)
Xiaohui Xie (University of Maryland Center for Environmental Science, Second Institute of Oceanography)
Wenfei Ni (University of Maryland Center for Environmental Science)
K. Michael Scaboo (University of Delaware)
Yuanyuan Xu (University of Delaware)
Jeffrey Cornwell (University of Maryland Center for Environmental Science)
Cassie Gurbisz (St. Mary’s College of Maryland)
Michael S. Owens (University of Maryland Center for Environmental Science)
George G. Waldbusser (Oregon State University)
Minhan Dai (Xiamen University)
W. Michael Kemp (University of Maryland Center for Environmental Science)

Will global change “stress out” ocean DOC cycling?

Posted by mmaheigan

· Tuesday, September 29th, 2020

The dissolved organic carbon (DOC) pool is vital for the functioning of marine ecosystems. DOC fuels marine food webs and is a cornerstone of the earth’s carbon cycle. As one of the largest pools of organic matter on the planet, disruptions to marine DOC cycling driven by climate and environmental global changes can impact air-sea CO2 exchange, with the added potential for feedbacks on Earth’s climate system.

Figure 1. Simplified view of major dissolved organic carbon (DOC) sources (black text) and sinks (yellow text) in the ocean.

Since DOC cycling involves multiple processes acting concurrently over a range of time and space scales, it is especially challenging to characterize and quantify the influence of global change. In a recent review paper published in Frontiers in Marine Science, the authors synthesize impacts of global change-related stressors on DOC cycling such as ocean warming, stratification, acidification, deoxygenation, glacial and sea ice melting, inflow from rivers, ocean circulation and upwelling, and atmospheric deposition. While ocean warming and acidification are projected to stimulate DOC production and degradation, in most regions, the outcomes for other key climate stressors are less clear, with much more regional variation. This synthesis helps advance our understanding of how global change will affect the DOC pool in the future ocean, but also highlights important research gaps that need to be explored. These gaps include for example a need for studies that allow to understand the adaptation of degradation/production pathways to global change stressors, and their cumulative impacts (e.g. temperature with acidification).

Authors:
C. Lønborg (Aarhus University)
C. Carreira (CESAM, Universidade de Aveiro)
Tim Jickells (University of East Anglia)
X.A. Álvarez-Salgado (CSIC, Instituto de Investigacións Mariñas)

Sea ice loss and the changing Arctic carbon cycle

Posted by mmaheigan

· Friday, September 18th, 2020

Loss of Arctic Ocean ice cover is altering the carbon cycle in ways that are not well understood. Effectively “popping the top off” the Arctic Ocean, ice loss exposes the sea surface to warming and exchange of CO₂ with the atmosphere. These processes are expected to increase CO₂ levels in the Arctic Ocean, changing its contribution to the global carbon cycle, but limited data collection in the region has thus far precluded the establishment of a clear relationship between CO₂ and ice cover. In a recent study published in Geophysical Research Letters, authors report on observed partial pressure of CO₂ (pCO₂) trends from several years of data collection in the surface waters of the Canada Basin of the Arctic Ocean. These data show that the pCO₂ is higher during years when ice cover is low. Uptake of atmospheric CO₂ and heating are the primary sources of the CO₂ increase, with only a small counteracting offset from biological production. These processes vary significantly from year to year, masking the likely increase in pCO₂ over time. Based on these results, we can expect that, while the Arctic Ocean has thus far been a significant sink for atmospheric CO₂, if ice loss continues the uptake of CO₂ will diminish in coming years.

Figure caption: Sea surface pCO₂ increases with decreasing ice concentration (left), determined using the mean of spatially gridded data. The sea surface pCO₂ data were collected on five research cruises on the Canadian icebreaker, CCGS Louis S. St-Laurent, from 2012 to 2017 (shown at right for 2017). The pCO₂ levels are indicated by the color along the ship cruise track (right color bar). The dark shading (left color bar) represents sea ice concentration averaged from the daily satellite data collected during the cruise.

Authors:
Michael DeGrandpre (University of Montana-Missoula)
Wiley Evans (Hakai Institute)
Mary-Louise Timmermans (Yale University)
Richard Krishfield (Woods Hole Oceanographic Institution)
Bill Williams (Institute of Ocean Sciences)
Michael Steele (University of Washington)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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