Ocean Carbon & Biogeochemistry
Studying marine ecosystems and biogeochemical cycles in the face of environmental change
  • Home
  • About OCB
    • About Us
    • Scientific Breadth
      • Biological Pump
      • Changing Marine Ecosystems
      • Changing Ocean Chemistry
      • Estuarine and Coastal Carbon Fluxes
      • Ocean Carbon Uptake and Storage
      • Ocean Observatories
    • Code of Conduct
    • Get Involved
    • Project Office
    • Scientific Steering Committee
    • OCB committees
      • Ocean-Atmosphere Interaction
      • Ocean Time-series
      • US Biogeochemical-Argo
  • Activities
    • Summer Workshop
    • OCB Webinars
    • Guidelines for OCB Workshops & Activities
    • Topical Workshops
      • CMIP6 Models Workshop
      • Coastal BGS Obs with Fisheries
      • C-saw extreme events workshop
      • Expansion of BGC-Argo and Profiling Floats
      • Fish, fisheries and carbon
      • Future BioGeoSCAPES program
      • GO-BCG Scoping Workshop
      • Lateral Carbon Flux in Tidal Wetlands
      • Leaky Deltas Workshop – Spring 2025
      • Marine CDR Workshop
      • Ocean Nucleic Acids ‘Omics
      • Pathways Connecting Climate Changes to the Deep Ocean
    • Small Group Activities
      • Aquatic Continuum OCB-NACP Focus Group
      • Arctic-COLORS Data Synthesis
      • BECS Benthic Ecosystem and Carbon Synthesis WG
      • Carbon Isotopes in the Ocean Workshop
      • CMIP6 WG
      • Filling the gaps air–sea carbon fluxes WG
      • Fish Carbon WG
      • Meta-eukomics WG
      • mCDR
      • Metaproteomic Intercomparison
      • Mixotrophs & Mixotrophy WG
      • N-Fixation WG
      • Ocean Carbonate System Intercomparison Forum
      • Ocean Carbon Uptake WG
      • OOI BGC sensor WG
      • Operational Phytoplankton Observations WG
      • Phytoplankton Taxonomy WG
    • Other Workshops
    • Science Planning
      • Coastal CARbon Synthesis (CCARS)
      • North Atlantic-Arctic
    • Ocean Acidification PI Meetings
    • Training Activities
      • PACE Hackweek 2025
      • PACE Hackweek 2024
      • PACE Training Activity 2022
  • Science Support
    • Data management and archival
    • Early Career
    • Funding Sources
    • Jobs & Postdocs
    • Meeting List
    • OCB Topical Websites
      • Ocean Fertilization
      • Trace gases
      • US IIOE-2
    • Outreach & Education
    • Promoting your science
    • Student Opportunities
    • OCB Activity Proposal Solicitations
      • Guidelines for OCB Workshops & Activities
    • Travel Support
  • Publications
    • OCB Workshop Reports
    • Science Planning and Policy
    • Newsletter Archive
  • Science Highlights
  • News

Author Archive for mmaheigan – Page 31

Impact of ENSO on biogeochemistry and lower trophic level response in the California Current System

Posted by mmaheigan 
· Thursday, February 16th, 2017 

El Niño events are one of the “most spectacular instances of interannual variability in the ocean” with “profound consequences for climate and the ocean ecosystem” (Cane 1986). Perturbations in the atmosphere directly influence the ocean with long-term effects on environmental variability in the tropical Pacific Ocean as the El Niño-Southern Oscillation (ENSO) shifts between El Niño, neutral, and La Niña states on a timescale of two to seven years. On longer timescales, teleconnections from the tropics to extratropical regions drive Pacific decadal variability, and these can be both oceanic and atmospheric in nature. Mid-latitude variability of the Pacific Decadal Oscillation (PDO) has been associated with ENSO (e.g., Newman et al. 2003) and is distinguished from ENSO in part by its multidecadal timescale (20-30 years; 50 years). The PDO is dependent upon ENSO as a response to the combined effects of atmospheric noise (Newman et al. 2003), as well as the asymmetry of the ENSO cycle (Rodgers et al. 2004). Therefore, when discussing decadal variability of the northeast Pacific, we are referring to the delayed impacts of ENSO.

Ecosystem impacts of northeast Pacific variability

Given the complex influence of tropical climate on northeast Pacific ecosystems, there is significant overlap between ENSO signals and higher frequency modes of the PDO Index. It is widely recognized that interactions between these two climate modes drive substantial ecosystem variability on a range of time and space scales. Large regime shifts in the North Pacific that have reverberated throughout the ecosystem, from physics to fish, are recurring patterns now associated with low-frequency changes in sea surface temperature (SST) that characterize the PDO (e.g., Mantua et al. 1997). Some of the higher-frequency fluctuations in ecosystem variables of the northeast Pacific that have not been successfully attributed to PDO or ENSO are now thought to be driven by an intermediate mode of variability called the North Pacific Gyre Oscillation (NPGO). While the PDO is characterized as the first empirical orthogonal function (EOF) of SST, NPGO is defined as the first EOF of both SST and sea surface height (SSH) anomalies (Di Lorenzo et al. 2008). Compared to PDO and ENSO, NPGO is more closely tied to variations in salinity, nutrient upwelling, and chlorophyll a (chl-a) in the long-running California Cooperative Oceanic Fisheries Investigations (CalCOFI) time-series. DiLorenzo et al. (2008) suggest that major ecosystem regime shifts require a simultaneous and opposite sign reversal of the NPGO and PDO, as was seen shortly after the massive ENSO event of 1997/98, and all three indices relate back to dynamics in the tropical Pacific. The struggle is to understand how these low- to high(er)-frequency modes of variability in the climate and physics drive fluctuations in biogeochemistry and coastal ecology.

As discussed by Jacox et al. (this post), there is an expected or canonical set of physical conditions associated with ENSO in the California Current System (CCS). This physical response to ENSO generally includes: 1) changes in surface wind stress that alter the strength of coastal upwelling and downwelling; 2) remote oceanic forcing by coastally trapped waves that propagate poleward along the US West Coast and modify thermocline depth and coastal stratification; and 3) changes to alongshore advection (Jacox et al., this post). The ecological response of the coastal marine environment includes changes in primary production and the community composition of plankton and higher trophic levels that can be directly or more subtly related to these physical factors. Primary production is driven by vertical nutrient flux to well-lit surface waters; nutrient supply is related to upwelling magnitude, upwelling source depth, and nutrient concentrations at the source depth. ENSO-related processes are also important for interannual and seasonal variability of oxygen concentrations and carbonate biogeochemistry on the Washington and Oregon Shelves (Siedlecki et al. 2015). In this article, we highlight some of the modeling and observational studies that have successfully attributed ENSO-like variability to specific impacts on the biogeochemistry and lower-trophic level organisms of the northeast Pacific and CCS.

 

Carbon dioxide

Numerical models are widely employed to diagnose climatic forcing of the physical and biogeochemical conditions of the northeast Pacific. For instance, using a fully coupled ocean and biogeochemical model, Xiu and Chai (2014) found that after accounting for atmospheric effects, the air-sea flux and resulting pCO2 of sea water in the Pacific was significantly correlated (0.6) to the Multivariate ENSO Index (MEI) with a lag of ten months. Similarly, Wong et al. (2010) found that sea surface pCO2 was significantly correlated with the MEI in the northeast Pacific. Biogeochemical models of different complexity have also highlighted the connection between PDO and the interannual variability of air-sea CO2 fluxes (e.g., McKinley et al. 2006). These studies also demonstrate that the individual components controlling surface ocean pCO2 in the northeast Pacific respond to PDO with significant amplitudes, but that their combined influence has a relatively small effect on the CO2 fluxes in this region. Xiu and Chai (2014) showed that the dominant driver of North Pacific pCO2 variability is anthropogenic CO2, whereas air-sea CO2 flux is more closely correlated with the PDO and the NPGO.

 

Nutrients and chlorophyll

In the coastal regions of the northeast Pacific, such as the CCS, ENSO significantly impacts the nutrient supply due to modifications of upwelling and source waters mentioned above (Jacox et al., this post). At the peak of the El Niño season in December-January, Frischknecht et al. (2016) found a pattern in the development of chlorophyll events through a modeling study focused on the CCS. Around the onset of the El Niño year, chlorophyll anomalies were consistently low. This pattern was even more pronounced during the spring of the following year. In spring of the second year (i.e. with the onset of the upwelling season), all events shared the development of a strong negative chlorophyll anomaly. Frischknecht et al. (2016) attributed this phenomenon to a persistent lack of nutrients to support production driven by a combination of physical mechanisms impacting the thermocline (Jacox et al. 2015; 2016; this post) and light limitation at the onset of the upwelling season. Consequently, El Niño events disrupt the biogeochemical cycling in these systems for months, even years, after the event is over. The observations in Oregon, from the Newport line in Fisher et al. (2015), detail the nitrate anomalies from 1995 to 2015, and the nitrate anomalies remain negative long after the Niño-3.4 SST anomaly suggested that the event was over. This may contribute to the success surrounding seasonal forecast systems like J-SCOPE, in which forecasts of biogeochemical parameters (e.g., bottom oxygen) outperformed those of physical variables (e.g., SST) in terms of predictive skill (Siedlecki et al. 2016).

Oxygen and carbon

The relationship between ENSO and nutrient availability from source waters can serve as an analog for oxygen and carbon content. We would expect from observed stoichiometry that when nutrients are low, oxygen is relatively high and carbon is low. In California, this has been documented: El Niño events correlate to higher oxygen and pH, while La Niña events are correlated with lower oxygen and pH (e.g., Nam et al. 2011). In the northern CCS along the Washington and Oregon coasts, the interannual variability in oxygen content of source waters has been correlated to NPGO more than ENSO (Peterson et al. 2013). Consistent with these findings, oxygen has been increasing since 2010 and aragonite saturation state (a measure of the availability of carbonate ion to calcifying organisms) has been elevated in 2015-2016 relative to the year prior in both Oregon and California (McClatchie et al. 2016).

 

Primary production & particle export

As an eastern boundary upwelling region, the CCS is among the most productive in the world in terms of primary production and fisheries. The suppression of nutrient availability described above can be thought of as reduced “upwelling efficacy” that leads to reduced primary production in the CCS, while La Niña often has the opposite effect due to associated increases in the upwelling efficacy (Jacox et al. 2015). In the southern CCS, the 1997/1998 El Niño led to a significant deepening of the nutricline, with the strongest effects along CalCOFI Line 80, and a pronounced regional reduction of primary production (Bograd and Lynn 2001). The uptake of silicon increased in central California (Santa Barbara Channel) during the onset of the 1997 event, suggesting that diatoms were major drivers of the primary productivity prior to the 1998 spring season when overall productivity was reduced in response to density surface adjustments (Shipe and Brzezinski 2003). Despite reductions in surface layer primary productivity in response to the El Niño, export ratios of particulate organic carbon and particulate organic nitrogen increased during the spring of 1998 relative to the 1994-1997 period, while biogenic Si flux decreased in response to the El Niño (Shipe et al. 2002). This counterintuitive result appears to be due to an increase in particulate material exported to depth. By 1999, ratios of Si/N and Si/C had not recovered to pre-El Nino conditions.

 

Phytoplankton community composition

Warmer waters and changes in nutrient supply associated with ENSO can lead to phytoplankton community shifts such as an influx of coccolithophores or an increase in harmful algal blooms (HABs). The most common harmful algal bloom organism in the CCS is the diatom genus Pseudo-nitzschia. McCabe et al. (2016) recently observed a link between the Oceanic Niño Index (ONI), the Pseudo-nitzschia growth rate anomaly determined from temperature-growth relationships, and domoic acid levels in razor clams over a 16-year period (Figure 1), implicating El Niño-driven warming in the unprecedented 2015 HAB along the US West Coast. Similarly, McKibben et al. (2017) linked warm phases of the PDO and ONI to domoic acid in shellfish in the northern CCS. The toxic blooms off Newport in 2015 were the most prolonged (late-April through October 2015) and among the most toxic ever observed off Oregon (Du et al. 2015; McKibben et al. 2017). Conversely, Santa Barbara Basin sediment trap data showed no significant correlation between a 15-year record of domoic acid levels and PDO, NPGO, or ENSO indices; however, there was a strong change point in the frequency and toxicity of these blooms following the 1997/1998 ENSO (Sekula-Wood et al. 2011).

Figure 1. Records of razor clam toxicity and the potential growth rate anomaly for Pseudo-nitzschia spp. are plotted below the Oceanic Niño Index (gold = El Niño, blue = La Niña, gray = neutral) to illustrate the association between ENSO events and harmful algal blooms in the northern CCS. The potential for Pseudo–nitzschia growth does not always coincide with records of high domoic acid in shellfish, e.g., 1997 El Niño. Figure adapted from McCabe et al. (2016).

 

Zooplankton community composition

Off the Oregon coast, a 21-year time-series of fortnightly hydrography and plankton sampling of shelf and slope waters showed that the water masses (and thus the plankton) that dominate shelf and slope waters vary seasonally, interannually, and on decadal scales. Thus, it is a simple matter to track the timing of summer or winter arrival, ENSO events, and changes in sign of the PDO (Figure 2). During summer months, northerly winds drive surface waters offshore (Ekman transport), which are replaced by the upwelling of cold nutrient-rich waters that penetrate the continental shelf and fuel high primary production. Northerly winds also enhance the southward transport of water (and plankton) from the coastal Gulf of Alaska into the coastal northern CCS, and these species are referred to as ‘cold water’ or ‘northern species.’ During winter, the winds reverse and the poleward Davidson current transports warm coastal water from southern California to the northern CCS, bringing with it ‘southern species’ of plankton. On longer timescales (5-10 years), cold-water, northern copepods are largely replaced by warm-water, southern copepods during El Niño events (Fisher et al. 2015) and during the positive phase of the PDO (Keister et al. 2011). Incorporating the physiological response of these zooplankton groups into biogeochemical-ecosystem models (in addition to the effects of physical transport) will be essential for advancing our predictive capacity of plankton communities in the CCS.

Figure 2. Monthly time series of the Pacific Decadal Oscillation and Oceanic Niño Index (upper) and monthly-averaged biomass anomalies of northern copepods (middle) and southern copepods (lower). Note the high coherence between the PDO and ONI with the copepod time series – positive anomalies of northern copepods are correlated with negative PDO and ONI; positive anomalies of southern copepods are correlated with positive PDO and ONI.

 

Predicting ecosystem response to ENSO: Now and in the future

State-of-the-art models, in situ measurements, and available satellite observations are all required to adequately characterize short- and long-term physical dynamics associated with ENSO and Pacific decadal variability. Seasonal-to-interannual forecasting of the ecosystem response to ENSO in the CCS and throughout the northeast Pacific will depend on our understanding of how interannual climate variability alters ocean biogeochemistry and productivity at the base of the food web, and therefore how predictive models should be modified to capture the dynamic range introduced by these anomalous events. Unusual warm water anomalies, as observed during large ENSO events, may serve as important analogs for assessing the impacts of long-term warming on the pelagic ecosystem of the CCS. Regional simulations suggest similarities between the physical drivers leading to biogeochemical variability from ENSO and those in projected future upwelling systems (Rykaczewski and Dunne 2010). Further exploration of the mechanisms and predictive skill of forecasts on seasonal timescales will enhance our understanding and improve our projections further into the future. Global climate models are unable to anticipate anomalous warming events such as major ENSO events. As such, they are unable to detect large-scale events related to shifts in the distribution of pelagic species or track ecological changes associated with such events. Furthermore, the evaluation of model-based forecasts and projections of ecosystem variations and changes across timescales requires that long-term physical, biogeochemical, and ecological observation programs are maintained and others initiated. High-resolution modeling approaches for forecasts and projections should also be prioritized, so that ecosystem impacts of future climate anomalies can be anticipated and understood in greater detail.

 

Authors

Clarissa Anderson (Scripps Institution of Oceanography)
Samantha Siedlecki (University of Washington)
Cecile Rousseaux (NASA Goddard Space Flight Center, Universities Space Research Association)
Brian Powell (University of Hawaii, Manoa)
Bill Peterson (NOAA Northwest Fisheries Science Center)
Chris Edwards (University of California, Santa Cruz)

References

Bograd, S. J., & Lynn, R. J. (2001). Physical‐biological coupling in the California Current during the 1997–99 El Niño‐La Niña Cycle. Geophysical Research Letters, 28(2), 275-278.

Cane, M. A., S. E. Zebiak, and S. C. Dolan, 1986: Experimental forecasts of El Niño. Nature 321, 827–832, doi:10.1038/321827a0.

Di Lorenzo, E., and Coauthors, 2008: North Pacific Gyre Oscillation links ocean climate and ecosystem change. Geophys. Res. Lett., 35, doi:10.1029/2007gl032838.

Du, X., W. Peterson, and L. O’Higgins, 2015: Interannual variations in phytoplankton community structure in the northern California Current during the upwelling seasons of 2001-2010. Mar. Ecol. Prog. Ser., 519, 75-87, doi: 10.3354/meps11097.

Fisher, J. L., W. T. Peterson, and R. Rykaczewski, 2015: The impact of El Niño events on the pelagic food chain in the northern California Current. Global Change Bio., 21, 4401-4414, doi:10.1111/gbc.13054.

Frischknecht, M., M. Münnich, and N. Gruber, 2016: Local atmospheric forcing driving an unexpected California Current System response during the 2015–2016 El Niño, Geophys. Res. Lett., 43, doi:10.1002/2016GL071316.

Jacox, M. G., J. Fiechter, A. M. Moore, and C. A. Edwards, 2015: ENSO and the California Current coastal upwelling response. J. Geophys. Res., 120, 1691–1702, doi: 10.1002/2014JC010650..

Jacox, M., E. L. Hazen, K. D. Zaba, D. L. Rudnick, C. A. Edwards, A. M. Moore, and S. J. Bograd, 2016: Impacts of the 2015–2016 El Niño on the California Current System: Early assessment and comparison to past events. Geophys. Res. Lett. 43, 7072-7080, doi:10.1002/2016GL069716.

Keister, J. E., E. Di Lorenzo, C. A. Morgan, V. Combes, and W. T. Peterson, 2011: Zooplankton species composition is linked to ocean transport in the Northern California Current. Glob. Change Bio., 17, 2498-2511, doi: 10.1111/j.1365-2486.2010.02383.x.

Liu, Z., and M. Alexander, 2007: Atmospheric bridge, oceanic tunnel, and global climatic teleconnections. Rev. Geophy., 45, doi: 10.1029/2005RG000172.

Mantua, N. J., S. R. Hare, Y. Zhang, J. M. Wallace, and R. C. Francis, 1997: A Pacific interdecadal climate oscillation with impacts on salmon production. Bull. Amer. Meteorol. Soc., 78, 1069–1079, doi: 10.1175/1520-0477(1997)078<1069:APICOW>2.0.CO;2.

McCabe, R. M., and Coauthors, 2016: An unprecedented coastwide toxic algal bloom linked to anomalous ocean conditions. Geoph. Res. Lett., 43, doi: 10.1002/2016GL070023.

McClatchie, S., A. R. Thompson, S. R. Alin, S. Siedlecki, W. Watson, and S. J. Bograd, 2016: The influence of Pacific Equatorial Water on fish diversity in the southern California Current System. J. Geophy. Res., 121, 6121-6136, doi: 10.1002/2016JC011672.

McKibben, S. M., W. Peterson, M. Wood, V. L. Trainer, M. Hunter, and A. E. White, 2017: Climatic regulation of the neurotoxin domoic acid. Proc. Nat. Acad. Sci., 114, 239-244, doi: 10.1073/pnas.1606798114.

Mckinley, G.A., and Coauthors, 2006: North Pacific carbon cycle response to climate variability on seasonal to decadal timescales. J. Geophy. Res., 111, doi: 10.1029/2005JC003173.

Nam, S., H. J. Kim, and W. Send, 2011: Amplification of hypoxic and acidic events by La Niña conditions on the continental shelf off California. Geophy. Res. Lett., 38, doi: 10.1029/2011GL049549.

Newman, M., G. P. Compo, and M. A. Alexander, 2003: ENSO-forced variability of the Pacific decadal oscillation. J. Climate, 16, 3853-3857, doi: 10.1175/1520-0442(2003)016<3853:EVOTPD>2.0.CO;2.

Peterson, J. O., C. A. Morgan, W. T. Peterson, and E. Di Lorenzo, 2013: Seasonal and interannual variation in the extent of hypoxia in the northern California Current from 1998–2012. Limnol. Oceanogr., 58, 2279-2292, doi: 10.4319/lo.2013.58.6.2279.

Rodgers, K. B., P. Friederichs, and M. Latif, 2004: Tropical Pacific decadal variability and its relation to decadal modulations of ENSO. J. Climate, 17, 3761-3774, doi: 10.1175/1520-0442(2004)017<3761:TPDVAI>2.0.CO;2.

Rykaczewski, R. R., and J. P. Dunne, 2010: Enhanced nutrient supply to the California Current Ecosystem with global warming and increased stratification in an earth system model. Geophy. Res. Lett., 37, doi: 10.1029/2010GL045019.

Sekula-Wood, E., C. Benitez-Nelson, S. Morton, C. Anderson, C. Burrell, and R. Thunell, 2011: Pseudo-nitzschia and domoic acid fluxes in Santa Barbara Basin (CA) from 1993 to 2008. Harmful Algae, 10, 567–575, doi: 10.1016/j.hal.2011.04.009.

Shipe, R. F., Passow, U., Brzezinski, M. A., Graham, W. M., Pak, D. K., Siegel, D. A., & Alldredge, A. L. (2002). Effects of the 1997–98 El Nino on seasonal variations in suspended and sinking particles in the Santa Barbara basin. Progress in Oceanography, 54(1), 105-127.

Shipe, R. F., and M. A. Brzezinski, 2003: Siliceous plankton dominate primary and new productivity during the onset of El Niño conditions in the Santa Barbara Basin, California. J. Mar. Sys., 42, 127-143, doi: 10.1016/S0924-7963(03)00071-X.

Siedlecki, S. A., N. S. Banas, K. A. Davis, S. Giddings, B. M. Hickey, P. MacCready, T. Connolly, and S. Geier, 2015: Seasonal and interannual oxygen variability on the Washington and Oregon continental shelves. J. Geophy. Res., 120. 608-633, doi: 10.1002/2014JC010254.

Siedlecki, S. A., I. C. Kaplan, A. J. Hermann, T. T. Nguyen, N. A. Bond, J. A. Newton, G. D. Williams, W. T. Peterson, S. R. Alin, and R. A. Feely, 2016: Experiments with seasonal forecasts of ocean conditions for the northern region of the California Current upwelling system. Sci. Rep., 6, 27203, doi: 10.1038/srep27203.

Valsala, V., S. Maksyutov, M. Telszewski, S. Nakaoka, Y. Nojiri, M. Ikeda, and R. Murtugudde, 2012: Climate impacts on the structures of the North Pacific air-sea CO2 flux variability. Biogeosci., 9, 477, doi: 10.5194/bg-9-477-2012.

Xiu, P., and F. Chai, 2014: Variability of oceanic carbon cycle in the North Pacific from seasonal to decadal scales. J. Geophy. Res.,119, 5270-5288, doi: 10.1002/2013JC009505.

 

Modeling to aid management of marine top predators in a changing climate

Posted by mmaheigan 
· Thursday, February 16th, 2017 

Marine top predators can include species that occupy a high trophic level (e.g., predatory sharks), have few predators (e.g., marine turtles), or can exert top-down control on food webs due to their large energetic demands (e.g., whales). While many species in the open ocean are widely distributed (e.g., Read et al. 2013; Reygondeau et al. 2012), the higher trophic levels are noteworthy as they are also wide-ranging (e.g., tuna (Itoh et al. 2003; Block et al. 2011; Hobday et al. 2015), seabirds (Shaffer et al. 2006), turtles (Shillinger et al. 2008; Briscoe et al. 2016)). These wide-ranging species can serve as ecological linkages within and across ocean basins, through both ontogenetic (larvae to adult) and seasonal migrations (Boustany et al. 2010; Hobday et al. 2015; Briscoe et al. 2016). Many wide-ranging marine animals show site fidelity at particular times during their lives or have relatively small and well-defined areas of critical habitat, which facilitates both exploitation (e.g., Hobday et al. 2015) and protection (e.g., Ban et al. 2014). This fidelity can be related to the temporal and spatial predictability of their physical habitats, as evidenced by predictable seasonal aggregations of high-trophic fishes, birds, turtles, and mammals (Scales et al. 2014), which is aided by sensory capabilities that permit them to locate specific physical and biological features.

These species are also of interest, as they are often charismatic, providing commercial, cultural, or ecological value (e.g., Weng et al. 2015). Top predators in marine ecosystems are supported by the productivity of primary and secondary consumers; thus they integrate a range of processes across these lower levels in the trophic food web. Their relatively long life spans and wide-ranging movements mean that many marine predator populations integrate variability across larger spatial and temporal scales than many lower-trophic-level populations (Shaffer et al. 2006). Top predators also have movement and sensory capabilities that permit active targeting of biophysical features (Scales et al. 2014). These characteristics make assessments of top predator populations particularly valuable for investigations of large-scale ecosystem variability and change.

For example, in the California Current System (CCS), plankton (Fisher et al. 2015; Lluch-Belda et al. 2005) and nekton (Lynn 2003; Phillips et al. 2007; Lluch-Belda et al. 2005) exhibit distributional shifts associated with El Niño-Southern Oscillation (ENSO) events, which are echoed by changes in the distribution of top predators. While the distribution of planktonic organisms is indicative of changes in circulation and habitat suitability, shifts in the distributions of top predators and other nekton are often the result of changes in migration patterns based on the availability of prey. Historical observations of the distributions of top predators indicate that along the West Coast of North America, populations are typically displaced poleward during El Niño events. Also, distributions of species with ranges that are typically offshore (e.g., highly migratory fishes) are contracted towards the West Coast, and the catch-per-unit-effort of tunas and yellowtail are often increased in response to the increased availability to nearshore fishers (Sydeman and Allen 1999; Benson et al. 2002; Henderson et al. 2014). Shifts in species distributions attributed to El Niño are often documented in local newspapers and fishing reports as well as in scientific publications (Lluch-Belda et al. 2005; Cavole et al. 2016). However, many predator populations resident to the CCS (e.g., common murre, Cassin’s auklet, and splitnose rockfishes) exhibit extreme negative productivity anomalies during El Niño (Black et al. 2014), and these events are the most prominent anomalies in time-series spanning multiple decades. Mass strandings of pinnipeds (e.g., sea lions) and die-offs of seabirds have also been associated with El Niño events. These unusual mortality events have been attributed to reduced availability of forage fishes and the exacerbated effects of harmful algal blooms that accompanied past El Niño events (McCabe et al. 2016).

This nearshore compression of viable habitat can also expose these species to a range of relatively concentrated anthropogenic threats, including fishing, oil and gas exploration, transport, and pollution (e.g., Ban et al. 2014). For example, Maxwell et al. (2013) combined electronic tracking from eight top predator species in the CCS with data on 24 anthropogenic stressors to develop a metric of cumulative utilization and impact. The distribution of these stressors and species showed that comprehensive management approaches are required, as no single approach was likely to be successful. Predicting the time-varying distribution and abundance of these and other high-trophic-level species may offer additional management insight, and allow a dynamic approach to management and conservation (e.g., Hobday et al. 2014; Scales et al. 2014; Lewison et al. 2015; Maxwell et al. 2015; Hazen et al. 2016).

Using top predators to monitor ocean changes

There is a suite of tools available for monitoring the response of top predator populations and distributions to variation in environmental conditions. At-sea surveys record the presence and abundance of air-breathing marine predators, such as seabirds, whales, sea turtles, and pinnipeds, which can be reliably sighted at the ocean surface or detected using acoustic methods. Standardized, repeat surveys such as the California Cooperative Oceanic Fisheries Investigations (CalCOFI; Bograd et al. 2003) and NOAA’s Cetacean Ship Surveys (e.g., CalCurCEAS 2014; Rankin et al. 2016) provide longitudinal datasets informative for understanding population trends and regional habitat preferences (Forney et al. 2015; Sydeman et al. 2014). When combined with in situ measurements of physical conditions and prey distributions, survey datasets generate insight into the finer-scale biophysical mechanisms that underlie the dynamics of predator-prey interactions (Benoit-Bird et al. 2013; Embling et al. 2012). Over broader scales, aerial surveys are useful for mapping distributions of air-breathers (Barlow & Forney 2007), and as new technologies become more widely available—such as autonomous underwater vehicles (AUVs), unmanned aerial vehicles (UAVs) (Christiansen et al. 2016; White et al. 2016), and passive acoustics (Morano et al. 2012)—they are increasingly used to survey and study predator populations.

Animal tracking and telemetry allow for remote acquisition of data describing movements and behaviors of marine predators as they move freely through their natural environment. Tracking individuals of known age, sex, body condition, and breeding status has revealed previously cryptic at-sea behaviors (Block et al. 2011; Hazen et al. 2012; Hussey et al. 2015). For example, satellite telemetry has revealed the complexities of ocean-basin scale migrations in several populations (e.g., seabirds (Clay et al. 2016; Shaffer et al. 2006), sea turtles (Briscoe et al. 2016), and pinnipeds (Robinson et al. 2012)). Understanding migratory behaviors improves our knowledge of phenology (timing) and increases chances of detecting climate change responses. Telemetry datasets have also proven particularly powerful in identifying important foraging habitats (e.g., Block et al. 2011; Grecian et al. 2016; Raymond et al. 2015). When linked with measures of body condition or population-level metrics, such as breeding success, tracking datasets provide novel insights into population status and responses to physical variability (e.g., Biuw et al. 2007). Together, these technologies have revolutionized understanding of at-sea habitat use by marine predator populations across the global ocean and hold promise for the use of top predators themselves as monitors of ecosystem change.

Additional statistical tools are necessary to relate predator distribution data to their prey and the environment. Species Distribution Models (SDMs) quantify predator habitat preferences by combining movement or distribution datasets with physical data from in situ measurements, satellite remote sensing, or ocean models (Robinson et al. 2011). A variety of techniques are used for modeling habitat preferences, such as Resource Selection Functions (e.g., generalized linear or additive models), machine learning (e.g., regression or classification trees; Elith & Leathwick 2009), and ensemble predictions from multiple algorithms (Scales et al. 2015). SDMs can enhance the value of tracking data in identifying foraging habitats and provide insight into how predictability in the locations of at-sea habitats links to persistence in the physical environment historically, in real-time, or for future projections (Hobday and Hartmann 2006; Hazen et al. 2013; Becker et al. 2014; Hazen et al. 2016). Individual-based or agent-based models link biological responses to heterogeneity and variability in the physical environment using sets of mechanistic rules that underlie biophysical interactions. To date, individual-based models have been used most extensively for lower trophic-level marine predators, such as small pelagic fish (e.g., Pethybridge et al. 2013), as the mechanisms that link the distributions of these organisms to biophysical conditions are generally better understood than for top predators. However, this approach has distinct advantages for modeling top predator habitat use as it explicitly includes prey-field dynamics, an aspect often missing from SDMs owing to the lack of empirical data describing broad-scale prey distributions. Recent advances using regional ocean models with an individual-based model framework have proven effective in modeling predator habitat selection (e.g., California sea lions (Fiechter et al. 2016)) and hold promise for forecasting top predator distributions in changing oceanic seascapes. In particular, a combination of statistical and mechanistic models can identify non-stationarity in predator-environment relationships and can use energetic and movement rules to incorporate prey into predictive models (Muhling et al. 2016).

Managing for a changing climate

Marine top predators are actively managed in many regions to provide social (e.g., tourism), economic (e.g., harvesting), or ecological benefits (e.g., healthy reefs). Traditional management approaches remain an important tool for managing top predators exploited in marine fisheries and addressing conservation objectives. However, in regions with both short-term and long-term change, static spatial management may not represent the best solution when there are competing goals for ocean use (protection or exploitation), as oceanic habitats are mobile and static protection often requires large areas to cover all of the critical habitat for a particular time period (Hobday et al. 2014; Maxwell et al. 2015). Instead, dynamic spatial management may be a suitable alternative, provided that species movements are predictable and suitable incentives exist (Hobday et al. 2014; Maxwell et al. 2015; Lewison et al. 2015). Several approaches, using data and models described in the previous section, can be used to develop a dynamic management approach in response to variable species distributions, including those based on historical patterns (e.g., past responses to ENSO), real-time, and forecasted prediction of species occurrence. Real-time approaches can use observed data (e.g., satellite data or assimilated ocean model output), while seasonal and decadal approaches require validated models and forecasts of ocean state (Figure 1).

Figure 1. Decisions relevant to fisheries, aquaculture, and conservation sectors at forecasting timescales are noted above the time line. Seasonal forecasting is considered most useful for proactive marine management at this time, with decadal forecasting in its infancy. Modified from Hobday et al. 2016.

 

The longest standing real-time example comes from the Australian Eastern Tuna and Billfish Fishery (ETBF; Hobday and Hartmann 2006). Fishers in this multi-species longline fishery often target different species—yellowfin, bigeye, and southern bluefin tunas; marlin; and swordfish—depending on seasonal availability and prevailing ocean conditions, and are themselves subjected to management decisions that alter their fishing behavior. In this region, dynamic ocean management was first used in 2003 to reduce unwanted bycatch of quota-limited southern bluefin tuna (SBT). The distribution of likely SBT habitat, which can change rapidly with the movement of the East Australian Current, was used to dynamically regulate fisher access to east coast fishing areas. A habitat preference model was used to provide near real-time advice to management about the likely SBT habitat (Hobday et al. 2010). Managers use these habitat preference reports to frequently update spatial restrictions to fishing grounds, which involve dividing the ocean into a series of zones based on expected distribution of SBT. These restrictions limit unwanted interactions by fishers that do not hold SBT quota (SBT cannot be landed without quota and in that situation must be discarded) and allow access to those that do have SBT quota to operate efficiently (Hobday et al. 2010). The underlying habitat model has evolved from a surface temperature-based model to an integrated surface and sub-surface model, and currently includes a seasonal forecasting element to aid managers and fishers planning for future changes in the location of the habitat zones (Hobday et al. 2011). This ongoing improvement and adaptation of the system has seen new oceanographic products tested and included in the operational model. This dynamic approach has reduced the need for large area closures while still meeting the management goal but does require more flexible fishing strategies to be developed, including planning vessel movements, home port selection, and quota purchase.

In parallel with improved biological data, numerical climate forecast systems have greatly improved over the last 30 years and now have the capability to provide useful seasonal forecasts (National Research Council, 2010). Dynamic forecast systems include i) global climate models (GCMs), which consist of atmosphere, ocean, land, and ice components; ii) observations from multiple sources (e.g., satellites, ships buoys); iii) an assimilation system to merge the observations with the model’s “first guess” to initialize forecasts; and iv) post-processing software to display and disseminate the model output. Such systems are currently used to make forecasts at scales on the order of 100 km on seasonal and even decadal timescales (e.g., Kirtman et al. 2014; Meehl et al. 2014; Stock et al. 2015). In addition, output from the GCMs is being used to drive much higher-resolution forecasts from regional ocean models (Siedlecki et al. 2016). Model skill on seasonal timescales is a function of persistence, multi-year climate modes (e.g., ENSO, IOD), and its teleconnections and transport by ocean currents. Model skill on decadal timescales arises due to anthropogenic climate change and slowly evolving ocean circulation features such as the Atlantic Meridional Overturning Circulation (AMOC; Salinger et al. 2016). GCM-based forecast systems are currently being used to predict sea surface temperature, sub-surface temperatures, and other ocean conditions that are subsequently used in marine resource applications described above (Hobday et al. 2011; Eveson et al. 2015, Figure 2). However, skill from statistical methods is currently on par with those from much more complex and computer-intensive numerical models (Newman 2013; Jacox et al. 2017), and forecast skill will always be limited regardless of the quality of both models and observations due to the chaotic elements of the climate system.

Figure 2. Ecosystem predictions require a suite of inputs and modeling steps to ensure both physical and biological components in the ecosystem are adequately represented. Physical models (from 1 degree to 1/10 degree downscaled models) can be used to predict higher trophic level distributions directly or can be used to drive individual based movement models of prey and predator to incorporate trophic dynamics in ecosystem predictions.

 

Where do we go from here?

As described above, ocean forecast systems and biological data are being linked to advance top predator management. Three priorities to strengthen this link and better inform management efforts include: (i) gather and share data, (ii) identify effective measures and improve mechanistic understanding of prey availability, and (iii) understand the spatial and temporal overlap between humans and particular focal species.

First, while the capacity to monitor marine top predators has made considerable strides in recent years (Hussey et al. 2015), juvenile portions of many top predator populations can be under-represented and need particular attention (Hazen et al. 2012). Tagging efforts provide detailed data on animal movement and can provide finer-scale data than traditional shipboard surveys. However, there are only a few examples of broad-scale tagging efforts that allow for measurement of diversity and multi-species habitat use, such as the Tagging of Pacific Predators and the Ocean Tracking Network (Block et al. 2011, Hussey et al. 2015). There is a growing trend for these data to be made widely available in repositories (e.g., Ocean Biogeographic Information System Spatial Ecological Analysis of Megavertebrate Populations (OBIS-SEAMAP), Seabird Tracking Database) that allow for greater synthesis than individual datasets alone (Halpin et al. 2006; Lascelles et al. 2016). This should be encouraged as standard practice, as in the oceanographic community (e.g., Global Ocean Ship-Based Hydrographic Investigations Program (GO-SHIP) database). Data collection must continue, as climate variability and change influence the relationship between top predators and their environment, and additional data are necessary to both test and refine predictive models.

Second, while the movements of many highly migratory predators are tied closely to prey availability, most models of marine top predator habitat use remotely sensed or in situ oceanographic measurements as proxies for prey distribution, which is rarely available. The difficulty is in measuring prey distribution at the scales appropriate for predators (e.g., Torres et al. 2008). We can measure fine-scale foraging behavior using archival tag data and associated prey measurements (e.g., Goñi et al. 2009; Hazen et al. 2009), but these ship-based approaches cannot provide data at the scales used in management-focused habitat models (see Lawson et al. 2015). We can model prey distributions mechanistically to inform models of top predator movements (Fiechter et al. 2016), but these approaches have not yet been coupled with real-time prediction. Prey data at migration-wide scales would greatly improve both statistical and mechanistic models by offering insight to where residence times are highest, yet these data remain difficult beyond fine-spatial scales (Benoit-Bird et al. 2013; Boyd et al. 2015).

Finally, both animals and humans use the marine environment at multiple spatial and temporal scales. For example in the Pacific, blue whales migrate from high-latitude foraging grounds to tropical breeding grounds seasonally and travel to discrete foraging hotspots based on prey availability (Bailey et al. 2009), and container vessels are making decisions such as ship speed, choice of shipping lanes, and port of call on multiple time scales as well (Hazen et al. 2016). This requires information on long-term habitat pathways and high-use areas (e.g., for static protection), as well as the shorter-term (e.g., seasonal) triggers of migration and identification of ocean features that result in high prey aggregations and increased residence times. Comparably, a fisher may change her long-term investment decisions (e.g., quota purchase, hiring crew) based on projections of long-term stock dynamics, or may decide when to start fishing seasonally based on weather and proximity to port, or when to set a net based on when fish schools are plentiful (Figure 1). Thus, management approaches could also be nested to include real-time predictions, seasonal forecasts, and decadal projections to inform multiple management processes (Hobday and Hartmann 2006; Hobday et al. 2011; Salinger et al. 2016). This suite of dynamic spatial management tools would represent an adaptive strategy robust to shifting habitats and species in response to climate variability and change.

 

Authors

Elliott Hazen (NOAA Southwest Fisheries Science Center)
Mike Alexander (NOAA Earth System Research Laboratory)
Steven Bograd (NOAA Southwest Fisheries Science Center)
Alistair J. Hobday (CSIRO, Australia)
Ryan Rykaczewski (University of South Carolina)
Kylie L. Scales (University of the Sunshine Coast, Australia)

References

Ban, N. C., and Coauthors, 2014: Better integration of sectoral planning and management approaches for the interlinked ecology of the open oceans. Mar. Policy, 49, 127-136, doi:10.1016/j.marpol.2013.11.024.

Barlow, J., and K. A. Forney, 2007: Abundance and population density of cetaceans in the California Current ecosystem. Fish. Bull., 105, 509-526.

Becker, E. A., K. A. Forney, D. G. Foley, R. C. Smith, T. J. Moore, and J. Barlow, 2014: Predicting seasonal density patterns of California cetaceans based on habitat models. End. Sp. Res., 23, 1-22, doi:10.3354/esr00548.

Benoit-Bird, K. J., and Coauthors, 2013: Prey patch patterns predict habitat use by top marine predators with diverse foraging strategies. PLoS One, 8, e53348, doi:10.1371/journal.pone.0053348.

Benson, S. R., D. A. Croll, B. Marinovic, F. P. Chavez, and J. T. Harvey, 2002: Changes in the cetacean assemblage of a coastal upwelling ecosystem during El Niño 1997-98 and the La Niña 1999. Prog. Oceanogr., 54, 279-291, doi:10.1016/S0079-6611(02)00054-X.

Biuw, M., and Coauthors, 2007: Variations in behavior and condition of a Southern Ocean top predator in relation to in situ oceanographic conditions. Proc. Nat. Acad. Sci., 104, 13705-13710, doi:10.1073/pnas.0701121104.

Black, B. A., W. J. Sydeman, D. C. Frank, D. Griffin, D. W. Stahle, M. García-Reyes, R. R. Rykaczewski, S. J. Bograd, and W. T. Peterson, 2014: Six centuries of variability and extremes in a coupled marine-terrestrial ecosystem. Science, 345,1498-1502, doi:10.1126/science.1253209.

Block, B. A., and Coauthors, 2011: Tracking apex marine predator movements in a dynamic ocean. Nature, 475, 86-90, doi:10.1038/nature10082.

Bograd, S. J., D. A. Checkley, and W. S. Wooster, 2003: CalCOFI: A half century of physical, chemical, and biological research in the California Current System. Deep Sea Res. II, 50, 2349-2353, doi:10.1016/S0967-0645(03)00122-X.

Boustany, A., R. Matteson, M. R. Castleton, C. J. Farwell, and B. A. Block, 2010: Movements of Pacific bluefin tuna (Thunnus orientalis) in the Eastern North Pacific revealed with archival tags. Prog. Oceanogr., 86, 94-104, doi:10.1016/j.pocean.2010.04.015.

Boyd, C., R. Castillo, G. L. Hunt, A. E. Punt, G. R. VanBlaricom, H. Weimerskirch, and S. Bertrand, 2015: Predictive modelling of habitat selection by marine predators with respect to the abundance and depth distribution of pelagic prey. J. Animal Ecol., 84, 1575-1588, doi:10.1111/1365-2656.12409.

Briscoe, D. K., and Coauthors, 2016: Multi-year tracking reveals extensive pelagic phase of juvenile loggerhead sea turtles in the North Pacific. Movement Ecol., doi:10.1186/s40462-016-0087-4.

Cavole, L. M., and Coauthors, 2016: Biological impacts of the 2013–2015 warm-water anomaly in the Northeast Pacific: Winners, losers, and the future. Oceanogr., 29, 273–285, doi:10.5670/oceanog.2016.32.

Christiansen, F., L. Rojano-Doñate, P. T. Madsen, and L. Bejder, 2016: Noise levels of multi-rotor unmanned aerial vehicles with implications for potential underwater impacts on marine mammals. Front. Mar. Sci., 3, 277, doi:10.3389/fmars.2016.00277.

Clay, T. A., A. Manica, P. G. Ryan, J. R. Silk, J. P. Croxall, L. Ireland, and R. A. Phillips, 2016: Proximate drivers of spatial segregation in non-breeding albatrosses. Sci. Rep., 6, doi:10.1038/srep29932.

Elith, J., and J. R. Leathwick, 2009: Species distribution models: ecological explanation and prediction across space and time. Ann. Rev. Ecol., Evol., Syst., 40, 677-697, doi:10.1146/annurev.ecolsys.110308.120159.

Embling, C. B., J. Illian, E. Armstrong, J. van der Kooij, J. Sharples, K. C. J. Camphuysen, and B. E. Scott, 2012: Investigating fine-scale spatio-temporal predator-prey patterns in dynamic marine ecosystems: a functional data analysis approach. J. App. Ecol., 49, 481-492, doi:10.1111/j.1365-2664.2012.02114.x.

Eveson, J. P., A. J. Hobday, J. R. Hartog, C. M. Spillman, and K. M. Rough, 2015: Seasonal forecasting of tuna habitat in the Great Australian Bight. Fish. Res., 170, 39–49, doi:10.1016/j.fishres.2015.05.008.

Fiechter, J., L. Huckstadt, K. Rose, and D. Costa, 2016: A fully coupled ecosystem model to predict the foraging ecology of apex predators in the California Current. Mar. Ecol. Prog. Ser., 556, 273-285, doi:10.3354/meps11849.

Fisher, J. L., W. T. Peterson, and R. R. Rykaczewski, 2015: The impact of El Niño events on the pelagic food chain in the northern California Current. Glob. Change Biol., 21, 4401–4414, doi:10.1111/gcb.13054.

Forney, K. A., E. A. Becker, D. G. Foley, J. Barlow, and E. M. Oleson, 2015: Habitat-based models of cetacean density and distribution in the central North Pacific. End. Sp. Res., 27, 1-20, doi:10.3354/esr00632.

Grecian, W.J ., and Coauthors, 2016: Seabird diversity hotspot linked to ocean productivity in the Canary Current Large Marine Ecosystem. Biol. Lett., 12, 20160024, doi:10.1098/rsbl.2016.0024.

Goñi, N., I. Arregui, A. Lezama, H. Arrizabalaga, and G. Moreno, 2009: Small scale vertical behaviour of juvenile albacore in relation to their biotic environment in the Bay of Biscay. Tagging and tracking of marine animals with electronic devices. Reviews: Methods and Technologies in Fish Biology and Fisheries, J. Nielsen, J. R. Sibert, A. J. Hobdayet al. Netherlands, Eds., Springer, 9, 51-76, doi:10.1007/978-1-4020-9640-2.

Halpin, P. N., A. J. Read, B. D. Best, K. D. Hyrenbach, E. Fujioka, M. S. Coyne, L. B. Crowder, S. A. Freeman, and C. Spoerri, 2006: OBIS-SEAMAP: developing a biogeographic research data commons for the ecological studies of marine mammals, seabirds, and sea turtles. Mar. Ecol. Prog. Ser., 316, 239-246, doi:10.3354/meps316239.

Haury, L. R., J. A. McGowan, and P. H. Wiebe, 1978: Patterns and processes in the time-space scales of plankton distributions. Patterns in Plankton Communities, J. H. Steele, Ed., Plenum Press, New York, New York, 277-377.

Hazen, E. L., S. M. Maxwell, H. Bailey, S. J. Bograd, M. Hamann, P. Gaspar, B. J. Godley, and G. L. Shillinger, 2012: Ontogeny in marine tagging and tracking science: technologies and data gaps. Mar. Ecol. Prog. Ser., 457, 221-240, doi:10.3354/meps09857.

Hazen, E. L., and Coauthors, 2013: Predicted habitat shifts of Pacific top predators in a changing climate. Nat. Climate Change, 3, 234-238, doi:10.1038/nclimate1686.

Hazen, E. L., and Coauthors, 2016: WhaleWatch: a dynamic management tool for predicting blue whale density in the California. J. App. Ecol., doi: 10.1111/1365-2664.12820.

Henderson, E. E., K. A. Forney, J. P. Barlow, J. A. Hildebrand, A. B. Douglas, J. Calambokidis, and W. S. Sydeman, 2014: Effects of fluctuations in sea-surface temperature on the occurrence of small cetaceans off Southern California. Fish. Bull., 112, 159–177.

Hobday, A. J., and Coauthors, 2014: Dynamic ocean management: Integrating scientific and technological capacity with law, policy and management. Stanford Environ. Law J., 33, 125-165.

Hobday, A. J., K. Evans, J. P. Eveson, J. H. Farley, J. R. Hartog, M. Basson, and T. A. Patterson, 2015: Distribution and migration – Southern bluefin tuna (Thunnus maccoyii). Biology and Ecology of Bluefin Tuna. T. Kitagawa and S. Kimura. London, Eds., CRC Press,189-210, doi:10.1201/b18714-12.

Hobday, A. J., J. Hartog, C. Spillman, and O. Alves, 2011: Seasonal forecasting of tuna habitat for dynamic spatial management. Can. J. Fish. Aq. Sci., 68, 898–911, doi:10.1139/f2011-031.

Hobday, A. J., and K. Hartmann, 2006: Near real-time spatial management based on habitat predictions for a longline bycatch species. Fish. Mgmt. Ecol., 13, 365-380, doi:10.1111/j.1365-2400.2006.00515.x.

Hobday, A. J., J. R. Hartog, T. Timmis, and J. Fielding, 2010: Dynamic spatial zoning to manage southern bluefin tuna capture in a multi-species longline fishery. Fish. Oceanogr., 19(3), 243–253, doi:0.1111/j.1365-2419.2010.00540.x.

Jacox, M. G., M. A. Alexander, C. A. Stock, and G. Hervieux, 2017: On the skill of seasonal sea surface temperature forecasts in the California Current System and its connection to ENSO variability. Climate Dyn., in review.

Hussey, N. E., and Coauthors, 2015: Aquatic animal telemetry: a panoramic window into the underwater world. Science, 348, 1255642, doi:10.1126/science.1255642.

Kirtman, B.P., and Coauthors 2014: The North American Multimodel Ensemble: Phase-1 Seasonal-to-Interannual Prediction; Phase-2 toward Developing Intraseasonal Prediction. Bull. Amer. Meteor. Soc., 95, 585–601, doi:10.1175/BAMS-D-12-00050.1.

Lascelles, B. G., and Coauthors, 2016: Applying global criteria to tracking data to define important areas for marine conservation. Div. Dist., 22, 422-431, doi:10.1111/ddi.12411.

Lawson, G. L., L. A. Hückstädt, A. C. Lavery, F. M. Jaffré, P. H. Wiebe, J. R. Fincke, D. E. Crocker, and D. P. Costa, 2015: Development of an animal-borne “sonar tag” for quantifying prey availability: test deployments on northern elephant seals. Anim. Biotelem., 3, 22, doi:10.1186/s40317-015-0054-7.

Lewison, R. L., and Coauthors, 2015: Dynamic ocean management: Identifying the critical ingredients of dynamic approaches to ocean resource management. Biosci., 65, 486-498, doi:10.1093/biosci/biv018.

Lluch-Belda, D., D. Lluch-Cota, and S. Lluch-Cota, 2005: Changes in marine faunal distributions and ENSO events in the California Current. Fish. Oceanogr., 14, 458–467, doi:10.1111/j.1365-2419.2005.00347.x.

Lynn, R. J., 2003: Variability in the spawning habitat of Pacific sardine (Sardinops sagax) off southern and central California. Fish. Oceanogr., 12, 541–553, doi:10.1046/j.1365-2419.2003.00232.x.

Maxwell, S. M., and Coauthors, 2013: Cumulative human impacts on marine predators. Nat. Comm., 4, 2688, doi:10.1038/ncomms3688.

Maxwell, S. M., and Coauthors, 2015: Dynamic ocean management: Defining and conceptualizing real-time management of the ocean. Mar. Pol., 58, 42–50, doi:10.1016/j.marpol.2015.03.014.

Meehl, G., and Coauthors, 2014: Decadal climate prediction: An update from the trenches. Bull. Amer. Meteor. Soc., 95, 243–267, doi:10.1175/BAMS-D-12-00241.1.

McCabe, R. M., and Coauthors, 2016: An unprecedented coastwide toxic algal bloom linked to anomalous ocean conditions. Geophys. Res. Lett., 43, 10,366–10,376, doi:10.1002/2016GL070023.

Morano, J. L., Rice, A. N., Tielens, J. T., Estabrook, B. J., Murray, A., Roberts, B. L., and Clark, C. W., 2012: Acoustically detected year‐round presence of right whales in an urbanized migration corridor. Con.s Biol., 26, 698-707, doi:10.1111/j.1523-1739.2012.01866.x.

Muhling, B. A., R. Brill, J. T. Lamkin, M. A. Roffer, S. K. Lee, Y. Liu, and F. Muller-Karger, 2016: Projections of future habitat use by Atlantic bluefin tuna: mechanistic vs. correlative distribution models. ICES J. Mar. Sci., doi:10.1093/icesjms/fsw215.

National Research Council, 2010: Assessment of intraseasonal to interannual climate prediction and predictability. Washington, DC: The National Academies Press. doi:10.17226/12878.

Pethybridge, H., D. Roos, V. Loizeau, L. Pecquerie, and C. Bacher, 2013: Responses of European anchovy vital rates and population growth to environmental fluctuations: an individual-based modeling approach. Ecol. Mod., 250, 370-383, doi:10.1016/j.ecolmodel.2012.11.017.

Queiroz, N., N. E. Humphries, G. Mucientes, N. Hammerschlag, F. P. Lima, K. L. Scales, P. I. Miller, L. L. Sousa, R. Seabra, and D. W. Sims, 2016: Ocean-wide tracking of pelagic sharks reveals extent of overlap with longline fishing hotspots. Proc. Nat. Acad. Sci., 113, 1582-1587, doi:10.1073/pnas.1510090113.

Rankin, S., F. Archer, J. L. Keating, J. N. Oswald, M. Oswald, A. Curtis, and J. Barlow, 2016: Acoustic classification of dolphins in the California Current using whistles, echolocation clicks, and burst pulses. Mar. Mamm. Sci., doi:10.1111/mms.12381.

Raymond, B., M. A. Lea, T. Patterson, V. Andrews-Goff, R. Sharples, J. B. Charrassin, M. Cottin, L. Emmerson, N. Gales, R. Gales, and S. D. Goldsworthy, 2015: Important marine habitat off east Antarctica revealed by two decades of multi-species predator tracking. Ecography, 38, 121-129, doi:10.1111/ecog.01021.

Read, B. A., and Coauthors, 2013: Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, doi:10.1038/nature12221.

Reygondeau, G., O. Maury, G. Beaugrand, J.-M. Fromentin, A. Fonteneau, and P. Cury, 2012: Biogeography of tuna and billfish communities. J. Biogeogr., 39, 114-129, doi:10.1111/j.1365-2699.2011.02582.x.

Robinson, L., J. Elith, A. J. Hobday, R. G. Pearson, B. E. Kendall, H. P. Possingham and A. J. Richardson, 2011: Pushing the limits in marine-based species distribution modelling: lessons from the land present challenges and opportunities. Glob. Ecol. Bio., 20, 789–802, doi:10.1111/j.1466-8238.2010.00636.x.

Robinson, P. W., and Coauthors, 2012: Foraging behavior and success of a mesopelagic predator in the northeast Pacific Ocean: insights from a data-rich species, the northern elephant seal. PLoS One, 7, e36728, doi: 10.1371/journal.pone.0036728.

Salinger, J., and Coauthors, 2016: Decadal-scale forecasting of climate drivers for marine applications. Adv. Mar. Biol. 74: 1-68. doi:10.1016/bs.amb.2016.04.002.

Scales, K. L., P. I. Miller, S. N. Ingram, E. L. Hazen, S. J. Bograd, and R. A. Phillips, 2015: Identifying predictable foraging habitats for a wide-ranging marine predator using ensemble ecological niche models. Div. Dist., 22, 212-224, doi:10.1111/ddi.12389.

Scales, K. L., P. I. Miller, L. A. Hawkes, S. N. Ingram, D. W. Sims and S. C. Votier, 2014: On the Front Line: frontal zones as priority at-sea conservation areas for mobile marine vertebrates. J. App. Ecol., 51, 1575–1583, doi:10.1111/1365-2664.12330.

Shaffer, S. A., and Coauthors 2006: Migratory shearwaters integrate oceanic resources across the Pacific Ocean in an endless summer. Proc. Nat. Acad. Sci., 103, 12799–12802, doi:10.1073/pnas.0603715103.

Shillinger, G. L., and Coauthors, 2008: Persistent leatherback turtle migrations present opportunities for conservation. PLoS Biol., 6, e171. doi:10.1371/journal.pbio.0060171.

Siedlecki, S. A., I. C. Kaplan, A. J. Hermann, T. T. Nguyen, N. A. Bond, J. A. Newton, G. D. Williams, W. T. Peterson, S. R. Alin, and R. A. Feely, 2016: Experiments with seasonal forecasts of ocean conditions for the northern region of the California Current upwelling system. Sci. Rep., 6, 27203, doi:10.1038/srep27203.

Stock, C. A., K. Pegion, G. A. Vecchi, M. A. Alexander, D. Tommasi, N. A. Bond, P. S. Fratantoni, R. G. Gudgel, T. Kristiansen, T. D. O’Brien, Y. Xue and X. Yang X, 2015: Seasonal sea surface temperature anomaly prediction for coastal ecosystems. Prog. Oceanogr., 137, 219-236, doi:10.1016/j.pocean.2015.06.007.

Sydeman, W. J., and S. G. Allen, 1999: Pinniped population dynamics in central California: correlations with sea-surface temperature and upwelling indices. Mar. Mamm. Sci., 15(2), 446-461, doi:10.1111/j.1748-7692.1999.tb00812.x.

Sydeman, W. J., S. A. Thompson, J. A. Santora, J. A. Koslow, R. Goericke, and M. D. Ohman, 2014: Climate-ecosystem change off southern California: time-dependence seabird predator-prey numerical responses. Deep Sea. Res. II, 158–170. doi:10.1016/j.dsr2.2014.03.008.

Weng, K. C., E. Glazier, S. Nicol and A.J. Hobday, 2015: Fishery management, development and food security in the Western and Central Pacific in the context of climate change. Deep Sea Res. II, 113, 301-311, doi:10.1016/j.dsr2.2014.10.025.

White, C. F., Y. Lin, C. M. Clark, and C. G. Lowe, 2016: Human vs robot: Comparing the viability and utility of autonomous underwater vehicles for the acoustic telemetry tracking of marine organisms. J. Exp. Mar. Biol. Ecol., 485, 112-118, doi:10.1016/j.jembe.2016.08.010.

Willis-Norton, E., E. L. Hazen, S. Fossette, G. Shillinger, R. R. Rykaczewski, D. G. Foley, J. P. Dunne, and S. J. Bograd, 2015: Climate change impacts on leatherback turtle pelagic habitat in the Southeast Pacific. Deep Sea Res. II, 113, 260-267, doi:10.1016/j.dsr2.2013.12.019.

Seasonal forecasts of ocean conditions in the California Current Large Marine Ecosystem

Posted by mmaheigan 
· Thursday, February 16th, 2017 

The California Current Large Marine Ecosystem (CCLME) is a productive coastal ecosystem extending from Baja California, Mexico, to British Columbia, Canada. High primary productivity is sustained by inputs of cooler, nutrient-rich waters during seasonal wind-driven upwelling in spring and summer. This high productivity fuels higher trophic levels, including highly valued commercial ($3.5B yr-1) and recreational ($2.5B yr-1) US fisheries (NOAA 2016). The CCLME system experiences large interannual and decadal variability in ocean conditions in response to the El Niño-Southern Oscillation (ENSO) and extratropical climate modes such as the Pacific Decadal Oscillation and the North Pacific Gyre Oscillation (Di Lorenzo et al. 2013). ENSO events affect productivity of the CCLME ecosystem through atmospheric and oceanic pathways. In the former, El Niño triggers a decrease in equatorward winds (Alexander et al. 2002), reducing upwelling and nutrient inputs to coastal surface waters (Schwing et al. 2002; Jacox et al. this issue). In the latter, El Niño events propagate poleward from the equator via coastally trapped Kelvin waves, increasing the depth of the thermocline, and hence decreasing the nutrient concentration of upwelled source waters during El Niño events (Jacox et al. 2015; Jacox et al. this issue). Thus, CCLME productivity, forage fish dynamics, and habitat availability for top predators can vary substantially between years (Chavez et al. 2002; Di Lorenzo et al. 2013; Hazen et al. 2013; Lindegren et al. 2013), and there is increasing recognition of the need to incorporate seasonal forecasts of ocean conditions into management frameworks to improve fisheries management and industry decisions (Hobday et al. 2016; Tommasi et al. 2017a). We describe herein recent improvements in the seasonal prediction of ENSO and how these advances have translated to skillful forecasts of oceanic conditions in the CCLME. We conclude by offering remarks on the implications for ecological forecasting and improved management of living marine resources in the CCLME.

Seasonal ENSO predictions

ENSO is the dominant mode of seasonal climate variability, and while it is a tropical Pacific phenomenon, its effects extend over the entire Pacific basin and even globally. ENSO and its teleconnections influence rainfall, temperature, and extreme events such as flooding, droughts, and tropical cyclones (Zebiak et al. 2015). Because of the extensive societal impacts associated with ENSO, its prediction has been central to the development of today’s state-of–the-art seasonal climate prediction systems. The first attempts at ENSO prediction go back to the 1980s (Cane et al. 1986). Today, resulting from the development of an ENSO observing system located in the equatorial Pacific (McPhaden et al. 1998) and large improvements in our understanding of ENSO dynamics over the last two decades (Neelin et al. 1998; Latif et al. 1998; Chen and Cane 2008), prediction systems can, in general, skillfully predict ENSO up to about six months in advance (Tippett et al. 2012; Ludescher et al. 2014). While such skillful ENSO forecasts may also improve prediction of the extratropical ENSO response, intrinsic variability of the extratropical atmosphere and ocean, and the chaotic nature of weather, will limit extratropical prediction skill no matter how accurately the models—and observations initializing them—predict ENSO itself. ENSO operational forecasts from numerous climate modeling centers are made available in real-time from Columbia University’s International Research Institute for Climate and Society and NOAA’s Climate Prediction Center.

Given its global impact, ENSO provides much of the climate forecasting skill on seasonal timescales (Goddard et al. 2001). While weather is only predictable over a timescale of days (up to about two weeks) owing to the chaotic nature of the atmosphere (Lorenz 1963), predictions of seasonal-scale anomalies are possible because of the ability of global dynamical prediction systems to model atmosphere-ocean coupling processes and other atmosphere forcing factors, such as land and sea ice, which vary more slowly than the atmosphere (Goddard 2001). Low-frequency variations in sea surface temperature (SST), particularly in the tropics, can modulate the atmosphere (as is the case for ENSO), making some weather patterns more likely to occur over the next month or season. Therefore, the ability of the coupled global climate models to skillfully forecast the evolution of observed tropical SSTs, shifts the distribution of likely average weather over the next month or season may be, and allows for skillful prediction of seasonal climate anomalies.

While seasonal predictability is relatively high for SST due to the ocean’s large thermal inertia, assessments of SST predictability have largely been focused on ocean basin-scale modes of variability (e.g., ENSO), linked to regional rainfall and temperature patterns over land. However, recent work has demonstrated that seasonal SST predictions are also skillful in coastal ecosystems (Stock et al. 2015; Hervieux et al. 2017), and, as detailed in the next section, specifically for the CCLME (Jacox et al. 2017).

Seasonal climate predictions in the California Current Large Marine Ecosystem

Recent advances in ENSO prediction and global dynamical seasonal climate prediction systems have enabled skillful seasonal forecasts of SST anomalies in the CCLME after bias correcting the forecasts to remove model drift (Stock et al. 2015; Jacox et al. 2017; Hervieux et al. 2017). Skill of SST anomaly predictions produced by the National Oceanic and Atmospheric Administration (NOAA) North American Multi-Model Ensemble (NMME) is shown in Figure 1. Skill is evaluated through the anomaly correlation coefficient (ACC) between monthly SST anomalies from retrospective forecasts from 1982 to 2009 and observed SST anomalies. Forecasts are skillful (ACC > 0.6) across initialization months for lead times up to about four months (Figure 1). Persistence of the initialized SST anomalies provides much of the prediction skill at these short lead times (Stock et al. 2015; Jacox et al. 2017). Preexisting temperature anomalies at depth may also provide some predictability. Skillful forecasts of February, March, and April SST extend to lead times greater than six months (Figure 1; Stock et al. 2015; Jacox et al. 2017). This ridge of enhanced predictive skill in winter to early spring forecasts is apparent across seasonal forecasting models and arises from the ability of the prediction systems to capture the wintertime coastal signature of predictable basin-scale SST variations (Stock et al. 2015; Jacox et al. 2017). Specifically, the models can skillfully forecast the predictable evolution of meridional winds during ENSO events and the associated changes in upwelling anomalies and SST in the CCLME (Jacox et al. 2017).

Figure 1. Anomaly correlation coefficients (ACCs) as a function of forecast initialization month (x-axis) and lead-time (y-axis) for (left) persistence and (right) NOAA NMME mean for the California Current system (US West Coast, less than 300 km from shore). Note the ridge of high SST anomaly prediction skill exceeding persistence at long lead-times (4-12 months) for late winter-early spring forecasts. Grey dots indicate ACCs significantly above zero at a 5% level; white dots indicate ACCs significantly above persistence at a 5% level. (Adapted from Jacox et al. 2017).

 

Owing to the severe ecological and economic consequences of extreme SST conditions in the CCLME (e.g., Cavole et al. 2016), it is also instructive to look at forecast performance over time, specifically during the CCLME extreme warm events of 1991-1992, 1997-1998, and 2014-2016, and the CCLME extreme cold events of 1988-1989, 1998-1999, and 2010-2011 (Figure 2). All of the cold events were associated with La Niña conditions, and the first two warm events and 2015-2016 were associated with El Niño. However, the anomalously warm conditions of 2014 and 2015, dubbed “the blob,” were caused by a resilient ridge of high pressure over the North American West Coast that suppressed storm activity and mixing, and allowed a build-up of heat in the upper ocean (Bond et al. 2015).

The forecast system is highly skillful at one-month lead times. It is also skillful at longer lead times of three and six months, as seen by the forecasted February to April SSTs following the 2010-2011 La Niña and the 2015-2016 El Niño (Figure 2). However, at these longer lead times, the forecast system was unable to capture the extreme magnitude of the warm “blob” anomalies during 2014 and 2015 (Figure 2). Also, while fall to winter conditions during the 1991-1992 El Niño and the late winter-early spring conditions following the 1997-1998 El Niño were forecasted with a six-month lead time, the prolonged warm conditions over the 1992 summer and the early transition to anomalously warm conditions during the summer of 1997 were not (Figure 2).

Transitions in and out of the 1991 and 1997 El Niño events were particularly unusual also at the Equator, with El Niño conditions developing late in 1991 and persisting well into the summer of 1992, and El Niño conditions appearing early in summer 1997 (see Figure 2 in Jacox et al. 2015). The spring predictability barrier for ENSO (i.e., a dip in forecast skill for forecasts initialized over the ENSO transition period of March-May; Tippet et al. 2012), as well as weaker teleconnections to the extratropics in summer, may partly explain the lower forecast skill for these El Niño events during summer and fall, and the poorer forecast performance in predicting the early transition to La Niña conditions in 1998-1999 and 2010-2011 (Figure 2).

The forecast system was also unable to predict the cooler conditions over the ENSO-neutral spring and summer of 1991 (Figure 2). The conditional predictability of CCLME winds and SST on ENSO implies that during ENSO-neutral conditions, such as in 1991 and 2014, forecasts of winds are not skillful and SST forecast skill is therefore limited to lead times up to about four months (Jacox et al. 2017). Thus, skillfulness of the seasonal predictions results from a complex interplay of factors that will require further study to identify the underlying mechanisms driving differing levels of robustness.

Figure 2. Predictions at 1-month (red line), 3-month (blue line), and 6-month (green line) lead times of SST anomalies (°C) for the CCLME from the NOAA Geophysical Fluid Dynamics Laboratory (GFDL) CM2.5 FLOR global climate prediction systems and Reynolds OISST.v2 observations (black line) for specific extreme events in the CCLME. Warm events are on the left; cold events are on the right. The dotted lines represent the February to April period of enhanced predictive skill following ENSO events. The x-axis is months since January 1 of the year in which the extreme event started.

 

Seasonal forecasts for fisheries management applications

While seasonal prediction of living marine resources has been a goal for the past three decades (GLOBEC 1997), operational use of seasonal SST forecasts to inform dynamic management of living marine resources was pioneered in Australia (Hobday et al. 2011), where seasonal SST forecasts are now used to improve the decision making of the aquaculture industry (Spillman and Hobday 2014; Spillman et al. 2015), fishers (Eveson et al. 2015), and fisheries managers (Hobday et al. 2011). Through both increased awareness of climate prediction skill at fishery-relevant scales and of their value to ecosystem-based management, such efforts have now begun to expand to other regions (see Tommasi et al. 2017a, and case studies therein). In the CCLME, recent work has demonstrated that integration of current March SST forecasts into fisheries models can provide useful information for catch limit decisions for the Pacific sardine fishery (i.e., how many sardines can be caught each year?) when combined with existing harvest cutoffs (Tommasi et al., 2017b). Knowledge of future SST conditions can improve predictions of future recruitment and stock biomass and allow for the development of a dynamic management framework, which could increase allowable fisheries harvests during periods of forecasted high productivity and reduce harvests during periods of low productivity (Tommasi et al. 2017b). Hence, integration of skillful seasonal forecasts into management decision strategies may contribute to greater long-term catches than those set by management decisions based solely on either past SST information or on no environmental information at all (Figure3; Tommasi et al., 2017b).

Figure 3. Mean long-term Pacific sardine catch and biomass following catch limit decisions integrating different levels of environmental information. The catch limit incorporating future SST information reflects the uncertainty of a 2-month lead forecast. (Adapted from Tommasi et al. 2017b).

 

Novel dynamical downscaling experiments in the Northern California Current as part of the JISAO Seasonal Coastal Ocean Prediction of the Ecosystem (J-SCOPE) project (Siedlecki et al. 2016) show that seasonal regional climate forecasts may also be of potential utility for dynamic spatial management strategies in the CCLME (Kaplan et al. 2016). Predictions of ocean conditions from a global dynamical climate prediction system (NOAA NCEP CFS) forced the Regional Ocean Modeling System (ROMS) with biogeochemistry to produce seasonal forecasts of ocean conditions, both at the surface and at depth, with measureable skill up to a four-month lead time (Siedlecki et al. 2016). The downscaling both enables forecasts of fishery-relevant biogeochemical variables such as chlorophyll, oxygen, and pH not yet produced by global forecasting systems, and resolves the fine-scale physical and ecological processes influencing the distribution of managed species within the CCLME. For instance, high-resolution regional implementations of ROMS resolve upwelling and coastal wave dynamics (Jacox et al. 2015; Siedlecki et al. 2016), two processes that drive the CCLME response to ENSO variability, better than coarser-resolution global models. Downscaled forecasts have also driven prototype forecasts of Pacific sardine spatial distribution (Kaplan et al. 2016). Such forecasts have the potential to inform fishing operations, fisheries surveys, and US and Canadian quotas for this internationally shared stock (Kaplan et al. 2016; Siedlecki et al. 2016; Tommasi et al. 2017a).

These CCLME case studies suggest that with recent advancements in state-of-the-art global dynamical prediction systems and regional downscaling models, some skillful seasonal predictions of ocean conditions are possible (Siedlecki et al. 2016; Tommasi et al. 2017a). Seasonal forecast skill may be further improved by improved representation of other features such as ocean eddies and gyre circulations in the extratropics and the basin-wide atmospheric response to SST anomalies in the Kuroshio-Oyashio region (Smirnov et al. 2015). Such skillful seasonal forecasts present opportunities for inclusion in adaptive management strategies for improved living marine resource management and better informed industry operations in the CCLME.

 

Authors

Desiree Tommasi (Princeton University)
Michael G. Jacox (University of California, Santa Cruz, NOAA Southwest Fisheries Science Center)
Michael A. Alexander Earth System Research Laboratory, NOAA
Francisco E. Werner (NOAA Southwest Fisheries Science Center)
Samantha Siedlecki (University of Washington)
Charles A. Stock Geophysical Fluid Dynamics Laboratory, NOAA
Nicholas A. Bond (University of Washington)

References

Alexander, M. A., I. Bladé, M. Newman, J. R. Lanzante, N. C. Lau, and J. D. Scott, 2002: The atmospheric bridge: The influence of ENSO teleconnections on air-sea interaction over the global oceans. J. Climate, 15, 2205-2231, doi: 10.1175/1520-0442(2002)015<2205:TABTIO>2.0.CO;2.

Bond, N. A., M. F. Cronin, H. Freeland, and N. Mantua, 2015: Causes and impacts of the 2014 warm anomaly in the NE Pacific. Geophys. Res. Lett., 42, 3414–3420, doi:10.1002/2015GL063306.

Cane, M. A., S. E. Zebiak, and S. C. Dolan, 1986: Experimental forecasts of El Niño. Nature 321, 827–832, doi:10.1038/321827a0.

Cavole, L. M., and Coauthors, 2016: Biological impacts of the 2013–2015 warm-water anomaly in the Northeast Pacific: Winners, losers, and the future. Oceanogr., 29, 273–285, doi: 10.5670/oceanog.2016.32.

Chavez, F. P., J. T. Pennington, C. G. Castro, J. P. Ryan, R. P. Michisaki, B. Schlining, P. Walz, K. R. Buck, A. McFadyen, and C. A. Collins, 2002: Biological and chemical consequences of the 1997–1998 El Niño in central California waters. Prog. Oceanogr., 54, 205–232, doi: 10.1016/S0079-6611(02)00050-2.

Chen, D., and M. A. Cane, 2008: El Niño prediction and predictability. J. Comp. Phys., 227, 3625-3640, doi: 10.1016/j.jcp.2007.05.014.

Di Lorenzo, E., and Coauthors, 2013: Synthesis of Pacific Ocean climate and ecosystem dynamics. Oceanogr. 26, 68–81, doi: 10.5670/oceanog.2013.76.

Eveson, J. P., A. J. Hobday, J. R. Hartog, C. M. Spillman, and K. M. Rough, 2015: Seasonal forecasting of tuna habitat in the Great Australian Bight. Fish. Res., 170, 39–49 doi: 10.1016/j.fishres.2015.05.008.

Global Ocean Ecosystem Dynamics (GLOBEC), 1997: Global Ocean Ecosystem Dynamics Science Plan. R. Harris and the members of the GLOBEC Scientific Steering Committee, Eds., IGBP secretariat, Stockholm, Sweden, 83 pp.

Goddard, L., S. J. Mason, S. E. Zebiak, C. F. Ropelewski, R. Basher, and M. A. Cane, 2001: Current approaches to seasonal-to-interannual climate predictions. Int. J. Climatology, 21, 1111–1152, doi: 10.1002/joc.636.

Hazen, E. L., and Coauthors, 2013: Predicted habitat shifts of Pacific top predators in a changing climate. Nat. Climate Change, 3, 234-238, doi:10.1038/nclimate1686.

Hervieux, G., M. Alexander, C. Stock, M. Jacox, K. Pegion, and D. Tommasi, 2017: Seasonal sea surface temperature anomaly prediction skill for coastal ecosystems using the North American multi-model ensemble (NMME). Climate Dyn., submitted.

Hobday, A. J., J. R. Hartog, C. M. Spillman, and O. Alves, 2011: Seasonal forecasting of tuna habitat for dynamic spatial management. Can. J. Fish. Aq. Sci., 68, 898-911, doi: 10.1139/f2011-031.

Hobday, A. J., C. M. Spillman, J. P. Eveson, and J. R. Hartog, 2016: Seasonal forecasting for decision support in marine fisheries and aquaculture. Fish.,. Oceanogr., 25, 45-56, doi: 10.1111/fog.12083.

Jacox, M. G., J. Fiechter, A. M. Moore, and C. A. Edwards, 2015: ENSO and the California Current coastal upwelling response. J. Geophys. Res. Oceans, 120, 1691–1702, doi:10.1002/ 2014JC010650.

Jacox, M., E. L. Hazen, K. D. Zaba, D. L. Rudnick, C. A. Edwards, A. M. Moore, and S. J. Bograd, 2016: Impacts of the 2015–2016 El Niño on the California Current System: Early assessment and comparison to past events. Geophys. Res. Lett. 43, 7072-7080, doi:10.1002/2016GL069716.

Jacox, M. G., M. A. Alexander, C. A. Stock, and G. Hervieux, 2017: On the skill of seasonal sea surface temperature forecasts in the California Current System and its connection to ENSO variability. Climate Dyn., in review.

Kaplan, I. C., G. D. Williams, N. A. Bond, A. J. Hermann, and S. Siedlecki, 2016: Cloudy with a chance of sardines: forecasting sardine distributions using regional climate models. Fish. Oceanogr., 25, 15–27, doi: 10.1111/fog.12131.

Latif, M., A. Sterl, E. Maier-Reimer, and M. M. Junge, 1998: Climate variability in a coupled GCM. Part I: the tropical Pacific. J. Climate, 6, 5–21, doi: 10.1175/1520-0442(1993)006<0005:CVIACG>2.0.CO;2.

Lindegren, M., D. M. Checkley Jr., T. Rouyer, A. D. MacCall, and N. C. Stenseth, 2013: Climate, fishing, and fluctuations of sardine and anchovy in the California Current. Proc. Nat. Acad. Sci., 110, 13672-13677, doi: 10.1073/pnas.1305733110.

Lorenz, E. N. 1963: Deterministic nonperiodic flow. J. Atmos. Sci., 20, 130-141, doi: 10.1175/1520-0469(1963)020<0130:DNF>2.0.CO;2.

Ludescher, J., A. Gozolchiani, M. Bogachev, A. Bunde, S. Havlin, and H. J. Schellnhuber, 2014: Very early warning of next El Niño. Proc. Nat. Acad. Sci., 111, 2064-2066, doi: 10.1073/pnas.1323058111.

McPhaden, M. J., and Coauthors, 1998: The TOGA observing system: a decade of progress. J. Geophys. Res., 103, 14,169-14,240, doi: 10.1029/97JC02906.

Neelin, J. D., D. S. Battisti, A. C. Hirst, F. F. Jin, Y. Wakata, T. Yamagata, and S. E. Zebiak, 1998: ENSO theory. J. Geophys. Res., 103, 14261–14290, doi: 10.1029/97JC03424.

NOAA, 2016: National Marine Fisheries Service Seafood Industry Impacts tool. https://www.st.nmfs.noaa.gov/apex/f?p=160:1.

Schwing, F. B., T. Murphree, L. DeWitt, and P. M. Green, 2002: The evolution of oceanic and atmospheric anomalies in the northeast Pacific during the El Niño and La Niña events of 1995–2001. Prog. Oceanogr., 54, 459–491, doi:10.1016/S0079-6611(02)00064-2.

Siedlecki, S. A., I. C. Kaplan, A. J. Hermann, T. T. Nguyen, N. A. Bond, J. A. Newton, G. D. Williams, W. T. Peterson, S. R. Alin, and R. A. Feely, 2016: Experiments with seasonal forecasts of ocean conditions for the northern region of the California Current upwelling system. Sci. Rep., 6, 27203, doi: 10.1038/srep27203.

Smirnov, D., M. Newman, M. A. Alexander, Y.-O. Kwon, and C. Frankignoul, 2015: Investigating the local atmospheric response to a realistic shift in the Oyashio sea surface temperature front. J. Climate, 28, 1126-1147, doi: 10.1175/JCLI-D-14-00285.1.

Spillman, C. M., J. R. Hartog, A. J. Hobday, and D. Hudson, 2015: Predicting environmental drivers for prawn aquaculture production to aid improved farm management. Aquaculture, 447, 56–65, doi: 10.1016/j.aquaculture.2015.02.008.

Spillman, C. M., and A. J. Hobday, 2014: Dynamical seasonal ocean forecasts to aid salmon farm management in a climate hotspot. Climate Risk Management, 1, 25-38, doi: 10.1016/j.crm.2013.12.001.

Stock, C. A., K. Pegion, G. A. Vecchi, M. A. Alexander, D. Tommasi, N. A. Bond, P. S. Fratantoni, R. G. Gudgel, T. Kristiansen, T. D. O’Brien, Y. Xue, and X. Yang, 2015: Seasonal sea surface temperature anomaly prediction for coastal ecosystems. Prog. Oceanogr., 137, 219-236, doi: 10.1016/j.pocean.2015.06.007.

Tippett, M. K., A. G. Barnston, and S. Li, 2012: Performance of recent multi-model ENSO forecasts. J. App. Meteorol. Climatol., 51, 637–654, doi: 10.1175/JAMC-D-11-093.1.

Tommasi, D., and Coauthors, 2017a. Managing living marine resources in a dynamic environment: the role of seasonal to decadal climate forecasts. Prog. Oceanogr., doi: 10.1016/j.pocean.2016.12.011.

Tommasi, D., C. Stock, K. Pegion, G. A. Vecchi, R. D. Methot, M. Alexander, and D. Checkley, 2017b: Improved management of small pelagic fisheries through seasonal climate prediction. Ecol. App., doi: 10.1002/eap.1458.

Zebiak, S. E., B. Orlove, A. G. Muñoz, C. Vaughan, J. Hansen, T. Troy, M. C. Thomson, A. Lustig, and S. Garvin, 2015: Investigating El Niño-Southern Oscillation and society relationships. WIREs Climate Change, 6, 17–34, doi: 10.1002/wcc.294.

 

 

 

 

 

 

 

 

 

 

A New Explanation for the Marine Methane Paradox

Posted by mmaheigan 
· Thursday, February 2nd, 2017 

A large fraction of the ocean-to-atmosphere flux of methane occurs in well-oxygenated, open ocean oligotrophic gyres, a phenomenon seemingly at odds with well-known pathways of archaeal methane production under strictly anaerobic conditions. Nearly a decade ago, David Karl and colleagues at the University of Hawaii proposed that water column methane could arise from bacterial metabolism of methylphosphonate, a simple organic compound with reduced phosphorus bonded directly to carbon. However, evidence for this pathway in the environment was lacking. In a recent study published in Nature Geoscience, Repeta et al. (2016) were able to test Karl’s hypothesis using a combination of microbial incubations, genomic analyses, and in-depth chemical analyses of marine dissolved organic matter (DOM). The study revealed that polysaccharides decorated with methyl- and hydroxyethylphosphonate esters are abundant throughout the water column, and that methane and ethylene were quickly produced by natural consortia of bacteria exposed to DOM-amended seawater. Companion knock-out experiments of bacteria isolates further showed that the C-P lyase metabolic pathway was responsible for methane production. Daily cycling of only 0.25% DOM polysaccharide can easily support measured fluxes of marine methane to the atmosphere. Figure from Repeta et al. (2016).

Subtropical Gyre Productivity Sustained by Lateral Nutrient Transport

Posted by mmaheigan 
· Tuesday, December 20th, 2016 

Vertical processes are thought to dominate nutrient resupply across the ocean, however estimated vertical fluxes are insufficient to sustain observed net productivity in the thermally stratified subtropical gyres. A recent study by Letscher et al. (2016) published in Nature Geoscience used a global biogeochemical ocean model to quantify the importance of lateral transport and biological uptake of inorganic and organic forms of nitrogen and phosphorus to the euphotic zone over the low-latitude ocean. Lateral nutrient transport is a major contributor to subtropical nutrient budgets, supplying a third of the nitrogen and up to two-thirds of the phosphorus needed to sustain gyre productivity. Half of the annual lateral nutrient flux occurs during the stratified summer and fall months, helping to explain seasonal patterns of net community production at the time-series sites near Bermuda and Hawaii. Figure from Letscher et al. (2016).

Nutrient Distributions Reveal the Fate of Sinking Particles

Posted by mmaheigan 
· Monday, November 21st, 2016 

The ocean’s “biological pump” regulates the atmosphere-ocean partitioning of carbon dioxide (CO2), and has likely contributed to significant climatic changes over Earth’s history (1, 2). It comprises two processes, separated vertically in the water column: (i) production of organic carbon and export from the surface euphotic zone (0-100m), mostly as sinking particles; and (ii) microbial remineralization of organic carbon to CO2 in deeper waters, where it cannot exchange with the atmosphere.

The depth of particulate organic carbon (POC) remineralization controls the longevity of carbon storage in the ocean (3), and strongly influences the atmospheric CO2 concentration (4). CO2 released in the mesopelagic zone (100-1000m) is returned to the atmosphere on annual to decadal timescales, whereas POC remineralization in the deep ocean (>1000m) sequesters carbon for centuries or longer (5). A common metric for the efficiency of the biological pump is thus the fraction of sinking POC that reaches the deep ocean before remineralization (6), referred to as the particle transfer efficiency, or Teff.

Currently, the factors that govern particle remineralization depth are poorly understood and crudely represented in climate models, compared to the lavish treatment of POC production by autotrophic communities in the surface (7). This compromises our ability to predict the biological pump’s response to anthropogenic warming, and its potential feedback on atmospheric CO2 (8). Over the last decade, a number of studies have identified a promising path towards closing this gap. If systematic spatial variations inTeff can be identified throughout the modern ocean, we might discern their underlying environmental or ecological causes (9, 10). However, direct observations from sediment traps are too sparse to constrain time-mean particle fluxes through the mesopelagic zone at the global scale, and no consensus pattern of Teff has emerged from these analyses.

Particle flux reconstruction

Instead of relying on sparse particle flux observations, a recent study took an alternative approach, leveraging the geochemical signatures that are left behind when particles remineralize (11). Products of remineralization include inorganic nutrients like phosphate (PO43-), whose global distributions are well characterized by hundreds of thousands of shipboard observations (12). In shallow subsurface waters, nutrient accumulation reflects the remineralization of both organic particles and dissolved organic matter, which is advected and entrained from the euphotic zone. Dissolved organic phosphorous (DOP) decomposes rapidly, and is almost completely absent

In shallow subsurface waters, nutrient accumulation reflects the remineralization of both organic particles and dissolved organic matter, which is advected and entrained from the euphotic zone. Dissolved organic phosphorous (DOP) decomposes rapidly, and is almost completely absent by depths of ~300m in the stratified low latitude ocean (13), and below the wintertime mixed layer in high latitudes (14). Deeper in the water column, particulate organic phosphorous (POP) remineralization is the only process that generates PO43- within water masses as they flow along isopycnal surfaces (Fig. 1). Rates of POP remineralization can therefore be diagnosed from the accumulation rate of PO43- along transport pathways in an ocean circulation model. This calculation requires a very faithful representation of the large-scale circulation, as provided by the Ocean Circulation Inverse Model (OCIM), whose flow fields are optimized to match observed water mass tracer distributions (15).

Assuming that organic matter burial in sediments is negligible, the integrated POP remineralization beneath a given depth horizon is equal to the flux of POP (FPOP) through that horizon, allowing complete reconstruction of flux profiles from ~300m to the deep ocean. Averaging these fluxes over large ocean regions serves to extract the large-scale signal from small-scale noise (Fig. 2). Regional-mean FPOP profiles show striking differences in shape and magnitude between subarctic, tropical, and subtropical regions, which are remarkably consistent between the Pacific and Atlantic Oceans (Fig 2a,b). FPOP near 300m is similar in subarctic and tropical zones, but attenuates faster through the mesopelagic in the tropics, reaching values of ~5mmol m-2yr-1 at 1000m, compared to ~7mmol m-2yr-1 in subarctic oceans. Subtropical FPOP attenuates even faster, and is indistinguishable from zero throughout most of the water column. In the Southern Ocean, FPOP is ~5mmol m-2yr-1 at 1000m in both the Antarctic and subantarctic regions, but the subantarctic flux profile attenuates slightly faster (Fig. 2c).

Patterns of transfer efficiency and underlying mechanisms

While these reconstructions place a robust constraint on POP fluxes to the deep ocean, they do not constrain rates of POP export at the base of the euphotic zone (zeu) that are needed to estimate the particle transfer efficiency (Teff). Remote sensing approaches are widely used to estimate large-scale organic carbon export, which can be converted to POP using an empirical relationship for particulate P:C ratios (16). However, multiple algorithms have been proposed to estimate net primary production and convert it to export, yielding widely different regional-mean rates (11). One way to pare down this variability is to weight each algorithm based on its ability to reproduce tracer-based export estimates in each ocean region (17, 18). This yields an “ensemble” estimate for the areal-mean POP export rate in each region, and an uncertainty range that reflects both observational error and the variability between satellite algorithms (Fig. 3a).

Combining the ensemble estimates of POP export with reconstructed FPOP at 1000m reveals a systematic pattern of transfer efficiency from zeu to the deep ocean (Fig. 3a).  The subtropics exhibit the lowest Teff of ~5%, significantly lower than expected from the canonical Martin Curve relationship (19), which is often considered to represent an “average” particle flux profile. In the tropics and the subantarctic zone of the Southern Ocean, Teff clusters close to the Martin Curve prediction of ~15%. The subarctic and Antarctic regions (i.e. high latitudes) are the most efficient at delivering the surface export flux to depth with Teff>25%, although these values are also associated with the largest uncertainty (Fig. 3a).

What controls the strong latitudinal variation of transfer efficiency? Particle flux attenuation is determined by the sinking speed and bacterial decomposition rate of particles: fast sinking and slow decomposition both result in greater delivery of organic matter to the deep ocean. Decomposition rates increase as a function of temperature in laboratory incubation studies (20), controlled by the temperature-dependence of bacterial metabolism. In a recent compilation of Neutrally Buoyant Sediment Trap (NBST) observations, particle flux attenuation was strongly correlated with upper ocean temperature between 100-500m (21), consistent with this effect. An almost identical temperature relationship explains ~80% of the variance in reconstructed regional Teff estimates (Fig. 3b).

An equally compelling argument can be made for particle sinking speeds controlling the pattern of Teff. According to the current paradigm of marine food webs (22), communities dominated by small phytoplankton export small particles that sink slowly, relative to the large aggregates and fecal pellets produced when large plankton dominate. The fraction of photosynthetic biomass contributed by tiny picoplankton (Fpico) varies from <30% in subarctic regions to >55% in oligotrophic subtropical regions (23), and explains ~86% of the variance in reconstructed Teff (Fig. 3c). Fpico also predicts flux attenuation in NBST profiles as skillfully as upper-ocean temperature (R2 = 0.81 and 0.82 respectively), but was not considered previously (21). Due to the spatial covariation of these factors in the ocean, statistical analysis alone is insufficient to determine the relative contributions of temperature and particle size to latitudinal variations in transfer efficiency.

Conclusions and future directions

Reconstructing deep-ocean particle fluxes has left us with a clearer understanding of the biological pump in the contemporary ocean and its climate sensitivity. Deep remineralization in high latitude regions results in efficient long-term carbon storage, whereas carbon exported in subtropical regions is recirculated to the atmosphere on short timescales (11). Atmospheric CO2 is likely more sensitive to increased high latitude nutrient utilization during glacial periods than previously recognized, whereas the expansion of subtropical gyres in a warming climate might result in a less efficient biological pump.

One caveat is that the new results highlighted here constrain POP transfer efficiency, not POC, and the two might be decoupled by preferential decomposition of one element relative to the other. The close agreement of these results with Neutrally Buoyant Sediment Trap observations (which measure POC) is encouraging, and suggests that the reconstructed pattern ofTeff is applicable to carbon. More widespread deployment of NBSTs, which circumvent the sampling biases of older sediment trap systems (24), would help confirm or refute this conclusion. A second limitation is that the wide degree of uncertainty in high latitude export rates (Fig. 3a) obscures estimates ofTeff in these regions. New tracer-based methods to integrate export across the seasonal cycle (25) will hopefully close this gap and enable more careful groundtruthing of satellite predictions.

Two plausible mechanisms –particle size and temperature – have been identified to explain large latitudinal variations in transfer efficiency, and new observational systems hold the potential to disentangle their effects. Underwater Visual Profilers (UVP) can now accurately resolve the size distribution of particles in mesopelagic waters (26). Although UVPs provide only instantaneous snapshots (quite literally) of the particle spectrum rather than time-mean properties, large compilations of these data will help establish the spatial pattern of particle size and its relationship to microbial community structure. In parallel, ongoing development of the RESPIRE particle incubator will allow for in-situ measurement of POC respiration (27), and better establish its temperature sensitivity.

Over the next few years, the upcoming EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) campaign stands to revolutionize our understanding of the fate of organic carbon (28). These insights will allow for a more balanced treatment of the “dark side” of the biological pump in global climate models, compared to euphotic zone processes, improving our predictions of biological carbon sequestration in a warming ocean.

Author

By Thomas Weber (University of Rochester)

Acknowledgment

This work was supported by NSF grant OCE-1635414 and the Gordon and Betty Moore Foundation (GBMF 3775).

References

1. J. L. Sarmiento et al., Philos. Trans. R. Soc. A Math. Phys. Eng. Sci. 325, 3–21 (1988).
2. A. Mart.nez-Garc.a et al., Science 343, 1347–50 (2014).
3. U. Passow, C. Carlson, Mar. Ecol. Prog. Ser. 470, 249–271 (2012).
4. E. Y. Kwon, F. Primeau, J. L. Sarmiento, Nat. Geosci. 2, 630–635 (2009).
5. T. Devries, F. Primeau, C. Deutsch, Geophys. Res. Lett. 39, 1–5 (2012).
6. P. J. Lam, S. C. Doney, J. K. B. Bishop, Glob. Biogeochem. Cycles. 25, 1–14 (2011).
7. J. K. Moore, S. C. Doney, J. a. Kleypas, D. M. Glover, I. Y. Fung, Deep. Res. Part II Top. Stud. Oceanogr. 49, 403–462 (2002).
8. L. Bopp et al., Biogeosci. 10, 6225–6245 (2013).
9. S. a. Henson, R. Sanders, E. Madsen, Glob. Biogeochem. Cycles. 26, 1–14 (2012).
10. M. J. Lutz, K. Caldeira, R. B. Dunbar, M. J. Behrenfeld, J. Geophys. Res. 112, C10011 (2007).
11. T. Weber, J. A. Cram, S. W. Leung, T. Devries, C. Deutsch, Proc. Nat. Acad. Sci. 113, 8606–8611 (2016).
12. H. E. Garcia et al., NOAA World Ocean Atlas (2010).
13. J. Abell, S. Emerson, P. Renaud, J. Mar. Res. 58, 203–222 (2000).
14. S. Torres-Vald.s et al., Glob. Biogeochem. Cycles. 23, 1–16 (2009).
15. T. Devries, Glob. Biogeochem. Cycles. 28, 631–647 (2014).
16. E. D. Galbraith, A. C. Martiny, Proc. Nat. Acad. Sci., 201423917 (2015).
17. M. K. Reuer, B. A. Barnett, M. L. Bender, P. G. Falkowski, M. B. Hendricks, Deep. Res. Part I Oceanogr. Res. Pap. 54, 951–974 (2007).
18. S. Emerson, Glob. Biogeochem. Cycles. 28, 14–28 (2014).
19. J. H. Martin, G. A. Knauer, D. M. Karl, W. W. Broenkow, Deep Sea Res. Part A, Oceanogr. Res. Pap. 34, 267–285 (1987).
20. M. H. Iversen, H. Ploug, Biogeosciences. 10, 4073–4085 (2013).
21. C. M. Marsay, R. J. Sanders, S. A. Henson, K. Pabortsava, E. P. Achterberg, Proc. Nat. Acad. Sci., 112, 1089–1094 (2014).
22. D. A. Siegel et al., Glob. Biogeochem. Cycles. 28, 181–196 (2014).
23. T. Hirata et al., Biogeosci. 8, 311–327 (2011).
24. K. O. Buesseler et al., Science 316, 567–570 (2007).
25. S. M. Bushinsky, S. Emerson, Glob. Biogeochem. Cycles. 29, 2050–2060 (2015).
26. M. Picheral et al., Limnol. Oceanogr. Methods. 8, 462–473 (2010).
27. A. M. P. McDonnell, P. W. Boyd, K. O. Buesseler, Glob. Biogeochem. Cycles. 29, 175–193 (2015).
28. D. A. Siegel et al., Front. Mar. Sci. 3, 1–10 (2016).

Marine mixotrophs exploit multiple resource pools to balance supply and demand

Posted by mmaheigan 
· Sunday, November 20th, 2016 

“So, in the sea, there are certain objects concerning which one would be at a loss to determine whether they be animal or vegetable.”  Aristotle, The History of Animals

Our understanding of marine ecosystems is strongly influenced by the terrestrial macroscopic world we see around us. For example, the distinction between phytoplankton and zooplankton reflects the very familiar divide between plants and animals. Mixotrophs are organisms that blur this distinction by combining photosynthetic carbon fixation and the uptake of inorganic nutrients with the ingestion of living prey (1). In the macroscopic terrestrial realm, the obvious examples of mixotrophs are the carnivorous plants. These organisms are so well known because they confound the otherwise clear divide between autotrophic plants and heterotrophic animals – in terrestrial environments, mixotrophs are the exception rather than the rule. There appear to be numerous reasons for this dichotomy involving constraints on surface area to volume ratios, the energetic demands of predation, and access to essential nutrients and water. Without dwelling on these aspects of macroscopic terrestrial ecology, it appears that many of the most important constraints are relaxed in aquatic microbial communities. Plankton have no need for the fixed root structures that would prevent motility, and in the three-dimensional fluid environment, they are readily exposed to both inorganic nutrients and prey. In addition, their small size and high surface area to volume ratios increase the potential efficiency of light capture and nutrient uptake. As such, mixotrophy is a common and widely recognised phenomenon in marine ecosystems. It has been identified in a very broad range of planktonic taxa and is found throughout the eukaryotic tree of life. Despite its known prevalence, the potential impacts of mixotrophy on the global cycling of nutrients and carbon are far from clear. In this article, I discuss the ecological niche and biogeochemical role of mixotrophs in marine microbial communities, describing some recent advances and identifying future challenges.

A ubiquitous and important strategy

Mixotrophy appears to be a very broadly distributed trait, appearing in all marine biomes from the shelf seas (2) to the oligotrophic gyres (3), and from the tropics (4) to the polar oceans (5). Within these environments, mixotrophy is often a highly successful strategy. For example, in the subtropical Atlantic, mixotrophic plankton make up >80% of the pigmented biomass, and are also responsible for 40-95% of grazing on bacteria (3, 4). Similar abundances and impacts have also been observed in coastal regions (2, 6).

How does the observed prevalence of mixotrophy affect the biogeochemical and ecological function of marine communities? To understand the potential answers to this question, it is helpful to review the constraints associated with the assumption of a strict dichotomy between autotrophic phytoplankton and heterotrophic zooplankton. Within this paradigm, primary production is restricted to the base of the food web, tightly coupled to the supply of limiting nutrients. Furthermore, the vertical export of
carbon is limited by the supply of exogenous (or “new”) nutrients (7), since any local regeneration of nutrients from organic matter is also associated with the local remineralisation of dissolved inorganic carbon. Energy and biomass are passed up the food web, but the transfer across trophic levels is highly inefficient (8) (Fig. 1) because the energetic demands of strictly heterotrophic consumers can only be met by catabolic respiration.

In the mixotrophic paradigm, several of these constraints are relaxed. Primary production is no longer exclusively dependent on the supply of inorganic nutrients because mixotrophs can support photosynthesis with nutrients derived from their prey. This mechanism takes advantage of the size-structured nature of marine communities (9), with larger organisms avoiding competitive exclusion by eating their smaller and more efficient competitors (10-12). In addition, the energetic demands of mixotrophic consumers can be offset by phototrophy, leading to increased efficiency of carbon transfer through the food web (Fig. 1). These two mechanisms dictate that mixotrophic ecosystems can fix and export more carbon for the same supply of limiting nutrient, relative to an ecosystem strictly divided between autotrophic phytoplankton and heterotrophic zooplankton (12).

The trophic flexibility associated with mixotrophy appears likely to have a profound effect on marine ecosystem function at the global scale. Fig. 2 contrasts the simulated fluxes of carbon and nitrogen through the intermediate nanoplankton (2-20 μm diameter) size class of a global ecosystem model (12). The left-hand maps show the balance of autotrophic and heterotrophic resource acquisition in a model with mutually exclusive phytoplankton and zooplankton. At low latitudes and especially in the
oligotrophic subtropical gyres, the inorganic nitrogen supply is acquired almost exclusively by the smallest and most competitive phytoplankton (not shown). This leaves an inadequate supply for larger and less competitive phytoplankton, and as such, the larger size classes are dominated by zooplankton (as indicated by the purple shading in Fig. 2a, b). In the more productive polar oceans and upwelling zones, grazing pressure prevents the smaller phytoplankton from exhausting the inorganic nitrogen supply, leaving enough for the larger phytoplankton to thrive in these regions (as indicated by the green shading).

The right-hand maps in Fig. 2 show the balance of autotrophic and heterotrophic resource acquisition in the intermediate size-class of an otherwise identical model containing only mixotrophic plankton. As in the model with mutually exclusive phytoplankton and zooplankton, the inorganic nitrogen supply in the oligotrophic gyres is exhausted by the smallest phytoplankton (see the purple shading in Fig. 2c). However, Fig. 2d indicates that this is not enough to stop photosynthetic carbon fixation among the mixotrophic nanoplankton. The nitrogen acquired from prey is enough to support considerable photosynthesis in a size class for which phototrophy would otherwise be impossible. For the same supply of inorganic nutrients, this additional supply of organic carbon serves to enhance the transfer of energy and biomass through the microbial food web, increasing community carbon:nutrient ratios and leading to as much as a three-fold increase in mean organism size and a 35% increase in vertical carbon flux (12).

Trophic diversity and ecosystem function

Marine mixotrophs are broadly distributed across the eukaryotic tree of life (13). The ability to combine photosynthesis with the digestion of prey has been identified in ciliates, cryptophytes, dinoflagellates, foraminifera, radiolarians, and coccolithophores (14). Perhaps the only major group with no identified examples of mixotrophy are the diatoms, which have silica cell walls that may hinder ingestion of prey. While some mixotroph species are conceptually more like plants (that eat), others are more like animals (that photosynthesise). A number of conceptual models have been developed to account for this observed diversity. One scheme (15) identified three primarily autotrophic groups that use prey for carbon, nitrogen or trace compounds, and two primarily heterotrophic groups that use photosynthesis to delay starvation or to increase metabolic efficiency. More recently, an alternative classification (16, 17) identified three key groups on a spectrum between strict phototrophy and strict phagotrophy. According to this classification, primarily autotrophic mixotrophs can synthesise and fully regulate their own chloroplasts, whereas more heterotrophic forms must rely on chloroplasts stolen from their prey. Among this latter group, the more specialised species exploit only a limited number of prey species, but can manage and retain stolen chloroplasts for relatively long periods. In contrast, generalist mixotrophs target a much wider range of prey, but any stolen chloroplasts will degrade within a matter of hours or days (18).

This diversity of trophic strategies is clearly more than most biogeochemical modellers would be prepared to incorporate into their global models. Nonetheless, many of the conceptual groups identified above are associated with the ability of mixotrophs to rectify the often-imbalanced supply of essential resources in marine ecosystems (19). This is clearly relevant to the coupling of elemental cycles in the ocean, and it appears likely that the relative abundance of different trophic strategies can impact the biogeochemical function of marine communities (1, 20). For example, recent work suggests that a differential temperature sensitivity of autotrophic and heterotrophic processes can push mixotrophic species towards a more heterotrophic metabolism with increasing temperatures (21). An important goal is therefore to accurately quantify and account for the global-scale effects of mixotrophy on the transfer of energy and biomass through the marine food web and the export of carbon into the deep ocean. We also need to assess how these effects might be sensitive to changing environmental conditions in the past, present, and future.

These processes are not resolved in most contemporary models of the marine ecosystem, which are often based on the representation of a limited number of discrete plankton functional types (22). In terms of resolving mixotrophy, it is not the case that these models have overlooked the one mixotrophic group. Instead, it may be more accurate to say that the groups already included have been falsely divided between two artificially distinct categories. As such, modelling mixotrophy in marine ecosystems is not just a case of increasing complexity by adding an additional mixotrophic component. Instead, progress can be made by understanding the position, connectivity, and influence of mixotrophic and non-mixotrophic organisms within the food web as an emergent property of their environment, ecology, and known eco-physiological traits. This is not a simple task, but progress might be made by identifying the fundamental traits that underpin the observed diversity of functional groups. To this end, a recurring theme in mixotroph ecology is that plankton exist on a spectrum between strict autotrophy and strict heterotrophy (14, 23, 24). Competition along this spectrum is typically framed in terms of the costs and benefits of different modes of nutrition. Accurate quantification of these costs and benefits should allow for a much clearer understanding of the trade-offs between different mixotrophic strategies (25), and how they are selected in different environments. In the future, a combination of culture experiments, targeted field studies, and mathematical models should help to achieve this goal, such that this important ecological mechanism can be reliably and parsimoniously incorporated into global models of marine ecosystem function.

Author

Ben Ward (University of Bristol)

References

1. Stoecker, D. K., Hansen, P. J., Caron, D. A. & Mitra, Annual Rev. Marine Sci. 9, forthcoming (2017).
2. Unrein, F., Gasol, J. M., Not, F., Forn, I. & Massana, R. The ISME Journal 8, 164–176 (2013).
3. Zubkov, M. V. & Tarran, G. A. Nature 455, 224–227 (2008).
4. Hartmann, M. et al. Proc. Nat. Acad. Sci. 5756–5760 (2012). doi:10.1073/pnas.1118179109
5. Gast, R. J. et al. J. Phycol. 42, 233–242 (2006).
6. Havskum, H. & Riemann, B. Marine Ecol. Prog. Ser. 137, 251–263 (1996).
7. Dugdale, R. C. & Goering, J. J. Limnol. Oceanogr. 12, 196–206 (1967).
8. Lindeman, R. L. Ecol. 23, 399–417 (1942).
9. Sieburth, J. M., Smetacek, V. & Lenz, J. Limnol. Oceanogr. 23, 1256–1263 (1978).
10. hingstad, T. F., Havskum, H., Garde, K. & Riemann, B. Ecol. 77, 2108–2118 (1996).
11. Våge, S., Castellani, M., Giske, J. & Thingstad, T. F. Aquatic Ecol. 47, 329–347 (2013).
12. Ward, B. A. & Follows, M. J. Proc. Nat. Acad. Sci. 113, 2958–2963 (2016).

A chalkier ocean? Multi-decadal increases in North Atlantic coccolithophore populations

Posted by mmaheigan 
· Saturday, November 19th, 2016 

Coccolithophores and the carbon cycle

Increasing atmospheric CO2 concentrations are resulting in both warmer sea surface temperatures due to the greenhouse effect and increasingly carbon-rich surface waters. The ocean has absorbed roughly one third of anthropogenic carbon emissions (1), causing a shift in carbon chemistry equilibrium to more acidic conditions with lower calcium carbonate saturation states (ocean acidification). Organisms that produce calcium carbonate structures are thought to be particularly susceptible to these changes (2-4).

Coccolithophores are the most abundant type of calcifying unicellular micro-algae in the ocean, producing microscopic calcium carbonate plates called coccoliths (5). Low-pH conditions have been shown to disrupt the formation of coccoliths (calcification; e.g., (6)). Therefore, it is generally expected that a higher-CO2 ocean will cause a reduction in calcification rates or a decrease in the abundance of these calcifiers. Such changes could have far-reaching consequences for marine ecosystems, as well as global carbon cycling and carbon export to the deep sea.

Coccolithophores use sunlight to synthesize both organic carbon through photosynthesis and particulate inorganic carbon (PIC) through calcification. Detrital coccolithophore shells form aggregates with organic material, enhancing carbon export to the deep sea (7). Coccolithophores also produce dimethyl sulfide (DMS), a climatically relevant trace gas that impacts cloud formation, ultimately influencing Earth’s albedo (8, 9). At the ecosystem level, coccolithophores compete for nutrients with other phytoplankton and provide energy for the rest of the marine food web. Coccolithophores have a broad range of irradiance, temperature, and salinity tolerances (10, 11). Moreover, their relatively low nutrient requirements and slow growth rates offer a competitive advantage under projected global warming and ocean stratification (5). This plasticity and opportunistic behavior can be critical for persistence in a changing oceanic environment. Given the wide range of biogeochemical and ecological processes impacted by coccolithophores, it is important to assess how anthropogenic changes may affect coccolithophore growth and calcification.

Many laboratory studies have investigated the impact of future environmental conditions on coccolithophores by decreasing pH, increasing dissolved inorganic carbon, and increasing temperature to mimic end-of-century projections. However, these have often yielded conflicting results: Some show a decrease, while others show no change or even increased calcification (e.g., (6, 12, 13)). For example, laboratory simulations of contemporary oceanic changes (increasing CO2 and decreasing pH) show that coccolithophores have the ability to modulate organic carbon production and calcification in response to variable amounts of dissolved inorganic carbon (DIC) but that low pH only affects these processes below a certain threshold (14). Another study indicated that coccolithophores could adapt to warming and highCO2 levels over the course of a year, maintaining their relative particulate organic carbon (POC) and PIC production per cell (15). One of the limitations of all laboratory experiments is that only a handful of species (and strains) are studied, which is only a tiny fraction of the diversity present in the oceans. Given the challenges of extrapolating laboratory results to real world oceans, studying recent trends in natural populations may lead to important insights.

The North Atlantic is both a region with rapid accumulation of anthropogenic CO2 (1) and an important coccolithophore habitat (Fig. 1), making this region a good starting point to search for in situ evidence of anthropogenic carbon effects on diverse coccolithophore populations. Two recent studies did precisely that: Rivero- Calle et al. (2015)(16) in the subpolar North Atlantic, and Krumhardt et al. (2016)(17) in the North Atlantic subtropical gyre. Using independent datasets, these two studies concluded that coccolithophores in the North Atlantic appear to be increasing in abundance and, contrary to the prevailing paradigm, responding positively to the extra carbon in the upper mixed layer.

Evidence from long-term in situ monitoring (two independent case studies)

Rivero-Calle et al. (2015) used data from the Continuous Plankton Recorder (CPR), a filtering device installed on ships of opportunity, to assess changes in coccolithophore populations from 1965 to 2010 in the subpolar North Atlantic. This highly productive, temperate region is dominated by large phytoplankton and characterized by strong seasonal changes in the mixed layer depth, nutrient upwelling, and gas exchange that lead to intense, well-established spring phytoplankton blooms.

Because coccolithophore cells are smaller than the mesh size used by the CPR, they cannot be accurately quantified in the CPR data set. Some coccolithophore cells do, however, get caught in the mesh and their occurrence (i.e. probability of presence) can be calculated and serve as a proxy for coccolithophore abundance. Using recorded presence or absence of coccolithophores over this multidecadal time-series, the authors showed that coccolithophore occurrence in the subpolar North Atlantic increased from being present in only 1% of samples to > 20% over the past five decades (Fig. 2). To assess the importance of a wide range of diverse environmental drivers on changes in coccolithophore occurrence, Rivero-Calle and co-authors used random forest statistical models. Specifically, they examined more than 20 possible biological and physical predictors, including CO2 concentrations, nutrients, sea surface temperature and the Atlantic Multidecadal Oscillation (AMO), as well as possible predators and competitors. Global and local CO2 concentrations were shown to be the best predictors of coccolithophore occurrence. The AMO, which has been in a positive phase since the mid-1990s (Fig. 2) and is associated with anomalously warmer temperatures over the North Atlantic, was also a good predictor of coccolithophore occurrence, but not as strong of a predictor as CO2.

The authors hypothesize that the synergistic effects of increasing anthropogenic CO2, the recent positive phase of the AMO, and increasing global temperatures contributed to the observed increase in coccolithophore occurrence in the CPR samples from 1965 to 2010. Complementing the Rivero-Calle et al. (2015) study, Krumhardt et al. (2016) used phytoplankton pigment concentration data from the long-running Bermuda Atlantic Time-series Study (BATS) and satellite-derived PIC data to assess recent changes in coccolithophore abundance in the subtropical North Atlantic. This region of the North Atlantic is characterized by Ekman convergence and downwelling, resulting in an oligotrophic environment. Despite relatively low productivity, subtropical gyres cover vast expanses of the global ocean and are thus important on a global scale.

In the North Atlantic subtropical gyre, researchers at BATS have performed phytoplankton pigment analyses since the late 1980s, as well as a suite of other oceanographic measurements (nutrients, temperature, salinity, etc.). This rich dataset provided insight into phytoplankton dynamics occurring at BATS over the past two decades. Coccolithophores contain a suite of pigments distinctive to haptophytes. Though there are many species of non-calcifying haptophytes in the ocean (18), the main contributors to the haptophyte community in oligotrophic gyres are coccolithophores (19). Using a constant haptophyte pigment to chlorophyll a ratio Krumhardt et al. (2016) quantified relative abundance of the coccolithophore chlorophyll a (Chlahapto) over the BATS time-series. A simple linear regression revealed that coccolithophore pigments have increased in the upper euphotic zone by 37% from 1990 to 2012 (Figure 2). On the other hand, total chlorophyll a at BATS only increased slightly over this time period.

While satellite-derived chlorophyll a is used as a proxy for biomass and abundance of the entire phytoplankton community (20), satellite-derived PIC is formulated to specifically retrieve calcium carbonate from coccolithophore shells (21, 22). Therefore, satellite PIC can be used as a proxy for coccolithophore abundance. Although there has been virtually no change in total chlorophyll a over most of the North Atlantic subtropical gyre over the satellite era (1998-2014), predominantly positive trends were shown over this time period for PIC (17). This indicates that coccolithophore populations appear to be increasing over and above other phytoplankton species in the subtropical gyre.

Like Rivero-Calle et al., Krumhardt et al. explored possible environmental drivers of this increase in coccolithophore pigments at BATS and coccolithophore PIC throughout the gyre. They performed linear correlations between variability of hypothesized drivers and coccolithophore chlorophyll a concentrations at the BATS site. Increasing DIC, specifically the bicarbonate ion (HCO3–) fraction, showed a strong positive correlation with pigments from coccolithophores, explaining a significant fraction of the coccolithophore pigment variability. DIC in the upper mixed layer at BATS has been increasing steadily over the past several decades from absorption of anthropogenic CO2 (Fig. 2; 23) and coccolithophores may be responding to this. But how does extra carbon in the water explain the increases in coccolithophore populations?

Environmental controls on coccolithophore growth

A few studies have shown that, in contrast to most other phytoplankton, coccolithophore photosynthesis (specifically, the widespread coccolithophore species Emiliania huxleyi) can be carbon-limited at today’s CO2 levels (e.g., 14, 24). This suggests that increases in surface DIC (e.g., due to the uptake of anthropogenic CO2) may alleviate growth limitation of coccolithophores. By reducing the amount of energy spent on carbon concentrating mechanisms, coccolithophores may invest in other metabolic processes such as growth, PIC or POC production. This explains why a relatively small increase in DIC could increase coccolithophore competitive ability, especially in oligotrophic environments where phytoplankton are routinely in competition for scarce nutrients. Rivero-Calle and co-authors compiled numerous published laboratory studies that assessed coccolithophore growth rates as a function of pCO2. The compilation, which included several species and strains of coccolithophores, showed that there is a quasi-hyperbolic increase in coccolithophore growth rates as pCO2 increases (Fig. 3). The range of local pCO2 concentrations in the subpolar/temperate North Atlantic from 1965 to 2010 (~175 to 435 ppm) spanned the pCO2 levels over which there is a substantial increase in published coccolithophore growth rates (Fig. 3). Growth rates tend to stabilize at ~500 ppmCO2, indicating that coccolithophore populations may continue to respond positively to increasing CO2 for the next few decades.

Other environmental factors (e.g., temperature, light, and available nutrients) may also impact and modulate coccolithophore growth rates, resulting in a net neutral or net negative impact in spite of increasing atmospheric (marine) CO2 (DIC) concentrations (see conceptual model, Fig. 3). For example, severe nutrient limitation in the subtropics may cause coccolithophores to be outcompeted by smaller marine cyanobacteria. In the subpolar North Atlantic, nutrients are more plentiful than in the subtropics, but Earth system models have predicted that climatic warming in this region may result in increased water column stratification (25). Under these stratified low-nutrient conditions, smaller phytoplankton such as coccolithophores could become more prevalent at the expense of larger phytoplankton such as diatoms (26, 27). However, if nutrient concentrations decline to the point at which they become the limiting factor for growth, then coccolithophore populations will also be negatively affected. Furthermore, the associated drop in pH from CO2 dissolving into the upper mixed layer can eventually be detrimental to coccolithophore growth and calcification. Specifically, pH values below 7.7 negatively affected the coccolithophore Emiliania huxleyi in laboratory experiments (14), though most oceanic regions will not show such a low pH any time in the near future. In short, anthropogenic CO2 entering the ocean may allow coccolithophores a competitive edge in the near future in some regions such as the North Atlantic, but other compounding influences from anthropogenic climate change such as severe nutrient limitation or ocean acidification are also important to consider, particularly in the oligotrophic gyres.

Open questions and future directions

While recent work has provided new insight into the impact of several environmental factors (irradiance, nutrients, temperature, pH, DIC) on coccolithophores, many questions remain. Among these, the vertical distribution of coccolithophore communities, grazing rates, and viral infection on coccolithophores, and species-specific responses to environmental change are relatively unexplored areas of research. For instance, some studies have shown species-specific and even strain-specific variability in the response of coccolithophores to CO2 (28, 29), but how various coccolithophore species respond to nutrient or light limitation is relatively unknown. Due to its cosmopolitan distribution and ability to grow relatively easily in the lab, E. huxleyi, has become the “lab rat” species. However, it may not be the most important calcite producer globally (30), nor the most representative of the coccolithophore group as a whole. As part of its peculiarities, E. huxleyi can both produce several layers of coccoliths and also exhibit a naked form without coccoliths, posing questions about the importance of non-calcified forms in the projected acidified oceans and about the role of calcification per se (31). Indeed, the fundamental question of why coccolithophores calcify is still unresolved and may vary between species (5, 32). In addition, while we recognize that some zooplankton groups graze on coccolithophores (coccoliths have been found in pelagic tintinnid ciliates (33), as well as copepod guts and fecal pellets (34-36)), little is known about predation rates or specificity in natural populations. Finally, we know that viruses can also cause bloom termination and that E. huxleyi can induce coccolith detachment to avoid viral invasion (37); however, there are still many unknowns related to bloom dynamics. Until we understand what drives coccolithophore calcification and variations in growth and mortality rates, we will have an incomplete picture of the role that coccolithophores play in marine ecology and the carbon cycle.

Krumhardt et al (2016) and Rivero-Calle et al (2016) both arrive at a simple conclusion: Coccolithophore presence in the North Atlantic is increasing. The common denominators in this equation are increasing global CO2 levels and increasing global surface temperatures. Therefore, even given regional oceanic variability in environmental drivers, we might expect to see similar trends in coccolithophore abundance in other regions. Given coccolithophores’ positive response to increasing anthropogenic CO2 and temperature, as well as general fitness under conditions that may be more prevalent in the future ocean, coccolithophores may become an even bigger player in the marine carbon cycle, which may have unexpected consequences.

Authors
Kristen Krumhardt (University of Colorado Boulder)
Sara Rivero-Calle (University of Southern California, Los Angeles)
Acknowledgments
We would like to thank co-authors on the Rivero-Calle et al. (2015) and Krumhardt et al. (2016) studies for their contributions to the research described. We also would like to thank Nikki Lovenduski and Naomi Levine for helpful comments in composing this OCB Newsletter piece. Many thanks to APL, NSF, NOAA and NASA for funding, and SAHFOS, ICOADS, the BATS research group, and NASA for their long-term data and making it freely available.

References

1. C. L. Sabine et al., Science 305 (2004).
2. Feely et al., Science 305, 362-366 (2004).
3. J. C. Orr et al., Nature 437, 681-686 (2005).
4. K. J. Kroeker et al., Global Change Biology 19, 1884-1896 (2013).
5. B. Rost, U. Riebesell, In Coccolithophores: from Molecular Processes to Global Impact, 99-125 (2004).
6. U. Riebesell et al., Nature 407, 364-367 (2000).
7. C. Klaas, D. E. Archer, Glob.Biogeochem. Cycles 16, (2002).
8. M. D. Keller, W. K. Bellows, R. R. L. Guillard, Acs Symposium Series 393, 167-182 (1989).
9. S. M. Vallina, R. Simo, Science 315, 506-508 (2007).
10. T. Tyrrell, A. Merico, In H. R. Thierstein, J. R. Young, Eds.,Coccolithophores: from Molecular Processes to Global Impact (2004),pp. 75-97.
11. W. M. Balch, In Coccolithophores: from Molecular Processes to Global Impact, 165-190 (2004).
12. M. D. Iglesias-Rodriguez et al., Science 320, 336-340 (2008).
13. S. Sett et al., Plos One 9, (2014).
14. L. T. Bach et al., New Phytol. 199, 121-134 (2013).
15. L. Schluter et al., Nature Clim. Change 4, 1024-1030 (2014).
16. S. Rivero-Calle, A. Gnanadesikan, C. E. Del Castillo, W. M.Balch, S. D. Guikema, Science 350, 1533-1537 (2015).
17. K. M. Krumhardt, N. S. Lovenduski, N. M. Freeman, N. R.Bates, Biogeosci. 13, 1163-1177 (2016).
18. H. Liu et al., Proc. Nat. Acad. Sci. 106, 12803-12808 (2009).
19. Y. Dandonneau, Y. Montel, J. Blanchot, J. Giraudeau, J. Neveux, Deep-Sea Res. Part I-Oceanographic Research Papers 53, 689-712(2006).
20. M. J. Behrenfeld, P. G. Falkowski, Limnol. Oceanogr. 42, 1-20(1997).
21. H. R. Gordon et al. (Geochemical Research Letters, 2001), vol.28, pp. 1587-1590.
22. W. M. Balch, H. R. Gordon, B. C. Bowler, D. T. Drapeau, E. S.
Booth, J. Geophys. Res.Oceans 110 (2005).
23. N. R. Bates et al., Oceanogr. 27, 126-141 (2014).
24. B. Rost, U. Riebesell, S. Burkhardt, D. Sultemeyer, Limnol.Oceanogr. 48, 55-67 (2003).
25. A. Cabr., I. Marinov, S. Leung, Clim.Dyn. 1-28 (2014).
26. L. Bopp, O. Aumont, P. Cadule, S. Alvain, M. Gehlen, Geophys.Res. Lett. 32, (2005).
27. I. Marinov, S. C. Doney, I. D. Lima, Biogeosci. 7, 3941-3959 (2010).
28. Langer et al., Geochem. Geophys. Geosys. 7, (2006).
29. Langer, G. Nehrke, I. Probert, J. Ly, P. Ziveri, Biogeosci. 6, 2637-2646 (2009).
30. C. J. Daniels et al., Marine Ecol. Prog. Ser. 555, 29-47 (2016).
31. M. N. Muller, T. W. Trull, G. M. Hallegraeff, Marine Ecol. Prog.Ser. 531, 81-90 (2015).
32. F. M. Monteiro et al., Science Advances 2, (2016).
33. J. Henjes, P. Assmy, Protist 159, 239-250 (2008).
34. S. Honjo, M. R. Roman, J. Marine Res. 36, 45-57 (1978).
35. R. P. Harris, Marine Biol. 119, 431-439 (1994).
36. J. D. Milliman et al., Deep Sea Res. Part I: Oceanographic Research Papers 46, 1653-1669 (1999).
37. M. Frada, I. Probert, M. J. Allen, W. H. Wilson, C. de Vargas, Proc. Nat. Acad. Sci. 105, 15944-15949 (2008).

Cornell Satellite Remote Sensing Training Course June 3 – 17, 2016 (Ithaca, NY)

Posted by mmaheigan 
· Friday, November 18th, 2016 

OCB-sponsored participants of the Cornell Satellite Remote Sensing Course held in June 2016 in Ithaca, NY.

Emily Bockmon studies carbonate chemistry in the ocean, focusing on best practices for measurement and calibration of instrumentation. In 2014, she completed her PhD at Scripps Institution of Oceanography where she is currently she is working as a researcher. Next year, Emily will begin as an Assistant Professor of Chemical Oceanography at California Polytechnic State University, San Luis Obispo. She is excited to focus on the Central Californian coastal upwelling environment and the local biogeochemistry and ocean acidification.

“For me, this class really was a crash course introducing me to the world of satellite measurements and data. I am very grateful to Bruce and the TAs for their patience and facilitation of the course, as well as my amazing peers who were willing to offer trouble-shooting help and great conversation. I appreciated how much hands-on work we did, diving into various datasets and possibilities for processing them. I walked away with practical knowledge and practice in collecting and using satellite data, which is exactly what I was hoping for. I feel as though I have been exposed to a new world of data, beyond the bench chemistry I am familiar with, and I am looking forward to pairing these measurements in the future.”

 

Phil Bresnahan received his PhD from Scripps Institution of Oceanography in 2015. Working in Professor Todd Martz’s lab, he developed in situ sensors to study the marine inorganic carbon system. His two main efforts involved designing a microfluidic total dissolved inorganic carbon analyzer for Argo floats and applying SeaFET/SeapHOx sensor technology in coastal ecosystems. Bresnahan is now an Environmental Scientist at the San Francisco Estuary Institute, a non-profit research organization focused on issues of mutual scientific and management-related importance in San Francisco Bay. At SFEI, he leads the efforts to characterize SF Bay’s biogeochemical variability utilizing moored sensors.

“I couldn’t speak more highly of the Cornell Satellite Remote Sensing Course. Every aspect (well, except for the cold showers—hopefully Cornell has fixed that by now!) exceeded my expectations. Bruce Monger’s teaching style was thoughtful and effective and he was a great organizer; his passion for education and remote sensing reflectance was inspiring. While my core expertise is in situ sensor development and application, I fully realize the necessity of combining multiple tools and analytical approaches. I’m excited to see what doors the course opens for me! PS: I’m processing Landsat8/OLI data using my newly acquired skills as I write this. Thanks, OCB and Bruce, for a great opportunity!”

 

Dylan Catlett is a 2nd year PhD student in marine science at the University of California, Santa Barbara, and is advised primarily by Dave Siegel. Currently, his research interests lie in linking optical, chemotaxonomic, and molecular indices of phytoplankton community structure and diversity. Prior to beginning his graduate degree, he studied biology and chemistry at the University of North Carolina, Chapel Hill, where he also conducted research on the molecular responses of diatoms to iron and light limitation.

“The Satellite Remote Sensing course at Cornell was phenomenal. The course was extremely hands-on and application-oriented, making it an excellent and practical introduction to ocean color remote sensing and programming with Python. By the end of the course, I was able to comfortably obtain, process, and analyze satellite ocean color data. I returned to work after the course with much improved programming skills, which has already benefited my research immensely. The class was one of the most well organized I have ever experienced, and the instructor did a wonderful job creating a productive and fun learning environment. My fellow students led to interesting discussions, both in and outside of class, and further contributed to the educational experience. Finally, Ithaca was a joy to explore on days off. I would highly recommend this course to anyone with an interest in using ocean color remote sensing products in their research.”

 

Jack Pan is a third-year PhD student working with Dr. Maria Vernet and Dr. Greg Mitchell at the Scripps Institution of Oceanography (SIO). He obtained his BS in Earth & Environmental Sciences at the University of California, Irvine, and MS in Marine Biology at SIO. Prior to enrolling at SIO, Jack worked on numerous projects at the Jet Propulsion Laboratory focusing on integrating oceanographic studies with applied sciences. In order to achieve a better understanding of the rapidly changing polar ecology and biogeochemistry, he is interested in utilizing optics-focused techniques to assimilate field measurements, remote sensing, and numerical models.

“I have gained a tremendous amount of knowledge during the Cornell Satellite Remote Sensing course in summer 2016. During this class, I learned to process and effectively utilize satellite data for my research; materials from every lecture and lab session were almost instantly helpful to my work. The course instructor, Dr. Bruce Monger, is a very kind and patient individual. He explained the material very clearly and made sure every student was doing well; and moreover, he fostered a very friendly learning environment for students to fully engage in the material and help each other to excel. Personally, I am still in contact with many of my classmates, and even formed academic collaborations with some of them. This is one of the best classes that I have ever taken, and I would highly recommend it to anyone; but more importantly, I would like to sincerely thank OCB for giving me the opportunity to attend this class.”

 

Melishia Santiago is a third year PhD student in the Graduate School of Geography at Clark University. Her work focuses on the study of Arctic marine environments and the combination of in situ measurements and satellite remote sensing. She investigates chromophoric dissolved organic matter (CDOM) distribution and sea ice extent in the Bering, Chukchi, and western Beaufort seas. More generally, Melishia is interested in the biogeochemical impacts in the water column as sea ice declines in the western Arctic Ocean.

“All the skills and knowledge that I learned in the Cornell Satellite Remote Sensing course were really invaluable. The instructor and TAs were passionate about the subject. Thus, I was able to understand ocean color remote sensing concepts and apply them to my own research. It was truly a life changing experience!”

 

Priya Sharma is currently a doctoral candidate at University of Pennsylvania studying “Spatiotemporal dynamics of phytoplankton biomass from ocean color remote sensing and ensemble climate model simulations.” Her research interests include assessing the evolution of phytoplankton group sizes and their functional types, ocean biological pump and response of ocean biology to various ENSO states. She completed her Master’s degree at the University of South Pacific and also worked for the Pacific Center of Environment and Sustainable Development doing oceanographic research on tropical cyclones and exploring links between climate change and social science (e.g., traditional knowledge).

“Having the amazing opportunity to attend the 2016 Cornell Satellite Remote Sensing Course has deepened my knowledge of remote sensing and optical properties. The most exciting experience for me was the processing of various levels of geophysical satellite products to obtain spatial information. This course struck an equitable balance of theoretical and hands-on practical lessons. Importantly, the data analysis tools and techniques that were taught were well aligned with my PhD thesis objectives, including empirical orthogonal function (EOF) analysis. I was also form collaborations with other participants of the course. Bruce is a very affable and approachable person, which made my experience during the Cornell course a very gratifying one.”

 

 

Inia M. Soto Ramos is currently a CONCORDE (Consortium in Coastal River-Dominated Ecosystems) postdoctoral researcher in the Division of Marine Science, University of Southern Mississippi at Stennis Space Center. She earned her BS in biology and education at the University of Puerto Rico, Mayaguez. She completed her MS and PhD degrees in biological oceanography at the University of South Florida. Her research interests include ocean color satellite remote sensing of coastal ecosystems, with emphasis on phytoplankton blooms and coastal ecosystems. Her current research is focused on coupling ocean color satellite imagery and high-resolution circulation models to understand the three-dimensionality of the Mississippi River Plume and the bio-optical surface response.

“The Cornell Satellite Remote Sensing Course was an outstanding experience! Dr. Bruce Monger is an exceptional professor and the course was applicable to any level of experience. Dr. Monger went the extra mile to make sure that everyone could adjust the learning experience to their own research. In my case, I have been working with satellite imagery for a few years; however I was not up to date on the technology and found myself with outdated skills. This course helped me get back on track and update my knowledge, especially my programming skills. Now, I feel much more confident with my skills and have since set up my personal computer system to integrate everything I learned during the course. I have been using the Python codes we learned during the class to process NASA’s satellite imagery for two harmful algal bloom manuscripts (in progress) and for several other projects within my group. I have no words to truly express my gratitude to Dr. Monger, the enthusiastic and motivated TAs, Cornell University, and OCB for making this opportunity a reality for me and the other 8 talented early career scientists!”

 

After pursuing a BSc in Earth System Sciences at McGill University and a MSc in Earth and Ocean Sciences at the University of Victoria, Jan-Erik Tesdal began working toward a PhD in Earth and Environment Sciences at Columbia University. His broad undergraduate training emphasized a holistic view of the Earth System. Continuing in this spirit, his MSc research project focused on one of the iconic examples of how the biosphere can interact with the climate system: the CLAW hypothesis. For his PhD work, Jan-Erik narrowed his focus slightly to biological oceanography. He is especially intrigued by the interaction of the marine ecosystems with the physical environment. His current research centers on assessing the impact of melting Arctic Sea ice and freshwater flux on phytoplankton productivity and carbon export in the North Atlantic.

“The Cornell Satellite Remote Sensing course was a great experience for me. Learning the material and working through problem sets in a group setting was fun and exciting. The instructor and his TAs were very amiable and helpful, and the method-oriented teaching was ideal to help me learn the skills necessary for working with satellite data. It was especially useful to learn about the processing of satellite imagery through the conjunction of Python programming and SeaDAS. In addition to the great deal that I learned, I am very grateful for the opportunity afforded by this course to build new relationships from around the world. I can’t imagine how my current research would suffer had I not taken this course.”

Frontiers in Ocean Optics and Ocean Colour Science July 18-30, 2016 (Villefranche-sur-Mer, France)

Posted by mmaheigan 
· Friday, November 11th, 2016 

Third IOCCG Summer Lecture Series 2016: Frontiers in Ocean Optics and Ocean Colour Science
July 18-30, 2016  in Villefranche-sur-Mer, France

 

Mike Sayers is a 2nd year PhD student at Michigan Tech University and a research scientist at the Michigan Tech Research Institute (MTRI), where his research has been focused on the use of bio-optical remote sensing methods to assess water quality changes in the Laurentian Great Lakes. Prior to his position at Michigan Tech, he received his BS and MS in remote sensing from Central Michigan University. His current interest is in the development and application of airborne and satellite hyperspectral inversion models for assessing primary production dynamics, harmful algal bloom occurrences, and benthic cover change.

“The 2016 IOCCG Summer Lecture Series in Villefranche-sur-Mer, France was a truly fantastic experience and incredibly valuable for my career in research. Some of the most distinguished researchers in the field delivered lectures that covered the entire range from fundamentals to state-of-the-art, leading-edge research, and went the extra distance to make sure we understood the concepts. I have already been able to apply some of the things I learned during the class to my research, which has given me fresh perspective moving forward. It was a pleasure to have been able to spend two weeks with my group of classmates; they are all wonderful people with diverse backgrounds and skills, and made the time very enlightening and enjoyable. I highly recommend this course to anyone studying ocean optics and ocean color remote sensing.”

 

Zhehai Shang earned his BS from the College of Chemistry at Beijing Normal University and is currently a graduate student at the University of Massachusetts Boston’s School for the Environment, working with Dr. Zhongping Lee. Zhehai’s research is focused on simulating light distribution in water under different environmental conditions.

 

“The IOCCG summer lecture series provided a great opportunity to meet other scientists working in my field. Through my interactions with other participants, I learned a lot in my own area of research, as well as other related fields. The course included a series of lectures on fundamental theory and more specialized topics, as well as hands-on laboratory work. The lectures on basic theory were challenging, but when combined with lab experiences, the instructors were able to effectively convey important concepts. The topical lectures provided an opportunity to learn about interesting research findings and approaches, which will continue to inspire my research in the future. I am grateful to have had this opportunity and I thank all of the organizers, teachers, sponsors, and others who made this course possible.”

 

 

« Previous Page
Next Page »

Filter by Keyword

abundance acidification additionality advection africa air-sea air-sea interactions algae alkalinity allometry ammonium AMO AMOC anoxic Antarctic Antarctica anthro impacts anthropogenic carbon anthropogenic impacts appendicularia aquaculture aquatic continuum aragonite saturation arctic Argo argon arsenic artificial seawater AT Atlantic atmospheric CO2 atmospheric nitrogen deposition authigenic carbonates autonomous platforms AUVs bacteria bathypelagic BATS BCG Argo benthic bgc argo bio-go-ship bio-optical bioavailability biogeochemical cycles biogeochemical models biogeochemistry Biological Essential Ocean Variables biological pump biophysics bloom blue carbon bottom water boundary layer buffer capacity C14 CaCO3 calcification calcite carbon carbon-climate feedback carbon-sulfur coupling carbonate carbonate system carbon budget carbon cycle carbon dioxide carbon export carbon fluxes carbon sequestration carbon storage Caribbean CCA CCS changing marine chemistry changing marine ecosystems changing marine environments changing ocean chemistry chemical oceanographic data chemical speciation chemoautotroph chesapeake bay chl a chlorophyll circulation clouds CO2 CO3 coastal and estuarine coastal darkening coastal ocean cobalt Coccolithophores commercial community composition competition conservation cooling effect copepod copepods coral reefs CTD currents cyclone daily cycles data data access data assimilation database data management data product Data standards DCM dead zone decadal trends decomposers decomposition deep convection deep ocean deep sea coral denitrification deoxygenation depth diatoms DIC diel migration diffusion dimethylsulfide dinoflagellate dinoflagellates discrete measurements distribution DOC DOM domoic acid DOP dust DVM ecology economics ecosystem management ecosystems eddy Education EEZ Ekman transport emissions ENSO enzyme equatorial current equatorial regions ESM estuarine and coastal carbon fluxes estuary euphotic zone eutrophication evolution export export fluxes export production extreme events faecal pellets fecal pellets filter feeders filtration rates fire fish Fish carbon fisheries fishing floats fluid dynamics fluorescence food webs forage fish forams freshening freshwater frontal zone functional role future oceans gelatinous zooplankton geochemistry geoengineering geologic time GEOTRACES glaciers gliders global carbon budget global ocean global ocean models global warming go-ship grazing greenhouse gas greenhouse gases Greenland ground truthing groundwater Gulf of Maine Gulf of Mexico Gulf Stream gyre harmful algal bloom high latitude human food human impact human well-being hurricane hydrogen hydrothermal hypoxia ice age iceberg ice cores ice cover industrial onset inland waters in situ inverse circulation ions iron iron fertilization iron limitation isotopes jellies katabatic winds kelvin waves krill kuroshio lab vs field land-ocean continuum larvaceans lateral transport LGM lidar ligands light light attenuation lipids low nutrient machine learning mangroves marine carbon cycle marine heatwave marine particles marine snowfall marshes mCDR mechanisms Mediterranean meltwater mesopelagic mesoscale mesoscale processes metagenome metals methane methods microbes microlayer microorganisms microplankton microscale microzooplankton midwater migration minerals mitigation mixed layer mixed layers mixing mixotrophs mixotrophy model modeling model validation mode water molecular diffusion MPT MRV multi-decade N2 n2o NAAMES NCP nearshore net community production net primary productivity new ocean state new technology Niskin bottle nitrate nitrogen nitrogen cycle nitrogen fixation nitrous oxide north atlantic north pacific North Sea NPP nuclear war nutricline nutrient budget nutrient cycles nutrient cycling nutrient limitation nutrients OA observations ocean-atmosphere ocean acidification ocean acidification data ocean alkalinity enhancement ocean carbon storage and uptake ocean carbon uptake and storage ocean color ocean modeling ocean observatories ocean warming ODZ oligotrophic omics OMZ open ocean optics organic particles oscillation outwelling overturning circulation oxygen pacific paleoceanography PAR parameter optimization parasite particle flux particles partnerships pCO2 PDO peat pelagic PETM pH phenology phosphate phosphorus photosynthesis physical processes physiology phytoplankton PIC piezophilic piezotolerant plankton POC polar polar regions policy pollutants precipitation predation predator-prey predators prediction pressure primary productivity Prochlorococcus productivity prokaryotes proteins pteropods pycnocline radioisotopes remineralization remote sensing repeat hydrography residence time resource management respiration resuspension rivers rocky shore Rossby waves Ross Sea ROV salinity salt marsh satellite scale seafloor seagrass sea ice sea level rise seasonal seasonality seasonal patterns seasonal trends sea spray seawater collection seaweed secchi sediments sensors sequestration shelf ocean shelf system shells ship-based observations shorelines siderophore silica silicate silicon cycle sinking sinking particles size SOCCOM soil carbon southern ocean south pacific spatial covariations speciation SST state estimation stoichiometry subduction submesoscale subpolar subtropical sulfate surf surface surface ocean Synechococcus technology teleconnections temperate temperature temporal covariations thermocline thermodynamics thermohaline thorium tidal time-series time of emergence titration top predators total alkalinity trace elements trace metals trait-based transfer efficiency transient features trawling Tris trophic transfer tropical turbulence twilight zone upper ocean upper water column upwelling US CLIVAR validation velocity gradient ventilation vertical flux vertical migration vertical transport warming water clarity water mass water quality waves weathering western boundary currents wetlands winter mixing zooplankton

Copyright © 2025 - OCB Project Office, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, MS #25, Woods Hole, MA 02543 USA Phone: 508-289-2838  •  Fax: 508-457-2193  •  Email: ocb_news@us-ocb.org

link to nsflink to noaalink to WHOI

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.