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Studying marine ecosystems and biogeochemical cycles in the face of environmental change

Archive for New OCB Research – Page 15

Untangling microbial evolution in the oceans: How the interaction of biological and physical timescales determine marine microbial evolutionary strategies

Posted by mmaheigan

· Wednesday, March 11th, 2020

Marine microbes are the engines of global biogeochemical cycling in the oceans. They are responsible for approximately half of all photosynthesis on the planet and drive the ‘biological pump’, which transfers organic carbon from the surface to the deep ocean. As such, it is important to determine how marine microbes will adapt and evolve in response to a changing climate in order to understand and predict how the global carbon cycle may change. However, we still lack a mechanistic understanding of how and how fast microorganisms adapt to stressful and changing environments. This is particularly challenging due to the diversity of organisms that live in the ocean and the dynamic nature of the oceans themselves—microbes are at the whim of ocean currents and so get transported large distances fairly quickly. For the first time, a new study published in PNAS provides a prediction on the controls of microbial evolutionary timescales in the oceans. The authors hypothesize that there is a trade-off for marine microbes between ability to evolve to long-term changes versus respond to shorter term variability. Their results suggest that marine microbes commonly experience conditions that favor a short-term strategy at the cost of long-term adaptation. This trade-off determines evolutionary timescales and provides a foundation for understanding distributions of microbial traits and biogeochemistry.

Illustration of trade-off in evolutionary strategy as a function of environmental variability. Trajectories where individuals perceived high environmental variability (a & b) exhibited low selective pressure for any one environment but allowed for high environmental tracking. Trajectories where individuals perceived a more stable environment (c&d) had high selective pressure for ’new environments’ (high probability of a selective sweep) but these individuals exhibited poor environmental tracking. Panels a and c show trajectories where selective sweeps were highly probable (red), likely (yellow), and had a low probability (grey). Panels b and d show the estimated persistence of non-genetic modifications necessary for environmental tracking, where grey indicates unrealistically long timescales.

Authors:
Nathan G. Walworth (University of Southern California)
Emily J. Zakem (University of Southern California)
John P. Dunne (Geophysical Fluid Dynamics Laboratory, NOAA)
Sinéad Collins (University of Edinburgh)
Naomi M. Levine (University of Southern California)

Hurricane-driven surge of labile carbon into the deep North Atlantic Ocean

Posted by mmaheigan

· Thursday, February 27th, 2020

Tropical cyclones (hurricanes and typhoons) are the most extreme episodic weather event affecting subtropical and temperate oceans. Hurricanes generate intense surface cooling and vertical mixing in the upper ocean, resulting in nutrient upwelling into the photic zone and episodic phytoplankton blooms. However, their influence on the deep ocean is unknown.

Figure 1. (a) Particulate organic carbon (POC) flux and percentage of the total mass flux (yellow) (top panel); fluxes (middle panel) and POC-normalized concentrations (bottom panel) of diagnostic lipid biomarkers for phytoplankton-derived and labile material, zooplankton, bacteria, and other (see legend); (b) Lipid concentrations (left panel) and POC-normalized concentrations (right panel) of diagnostic lipid biomarkers for the same sources as in (a) (see legend) measured two weeks after Nicole’s passage (25-29 Oct. 2016). Shown for reference are total lipid concentration profiles in April 2015 (dark gray, typical post spring bloom conditions) and Nov 2015 (light gray, typical minimum production period).

In October 2016, Category 3 Hurricane Nicole passed over the Bermuda time-series site (Oceanic Flux Program (OFP) and Bermuda Atlantic Time-Series site (BATS)) in the oligotrophic NW Atlantic Ocean. In a recent study published in Geophysical Research Letters, authors synthesized multidisciplinary data from hydrographic and phytoplankton measurements and lipid composition of sinking and suspended particles collected from OFP and BATS, respectively, after Hurricane Nicole in 2016. After the hurricane passed, particulate fluxes of lipids diagnostic of fresh phytodetritus, zooplankton, and microbial biomass increased by 30-300% at 1500 m depth and 30-800% at 3200 m depth (Figure 1a). In addition, mesopelagic suspended particles were enriched in phytodetrital material, as well as zooplankton- and bacteria-sourced lipids (Figure 1b), indicating particle disaggregation and a deep-water ecosystem response.

These results suggest that carbon export and biogeochemical cycles may be impacted by climate-induced changes in hurricane frequency, intensity, and tracks, and, underscore the sensitivity of deep ocean ecosystems to climate perturbations.

Authors:
Rut Pedrosa-Pamies (Marine Biological Laboratory)
Maureen H. Conte (Bermuda Institute of Ocean Science and Marine Biological Laboratory)
JC Weber (Marine Biological Laboratory)
Rodney Johnson (Bermuda Institute of Ocean Science)

Nitrate enrichment may threaten coastal wetland carbon storage

Posted by mmaheigan

· Thursday, February 27th, 2020

With their high primary productivity and slow decomposition in anoxic soils, salt marshes and other coastal wetlands can store carbon more efficiently than terrestrial uplands. These wetlands also provide critical ecosystem services such as interception of land-derived nutrients before they can enter the coastal ocean. Therefore, it is important to understand how anthropogenic supplies of nitrate (NO₃^–) affect marsh sustainability and carbon storage.

In marsh sediment studies, the most common form of experimental nitrogen enrichment uses pelletized fertilizer composed of ammonium, urea, or other organic based fertilizers. Authors of a recent study published in Global Change Biology hypothesized that when nutrients were instead added in the form of nitrate (NO₃^–), the most common form of nitrogen enrichment in coastal waters, it would stimulate microbial decomposition of organic matter by serving as an electron acceptor for microbial respiration in anoxic salt marsh sediments. Furthermore, decomposition would vary with sediment depth, with decreased decomposition at greater depths, where less biologically available organic matter accumulated over time.

Figure 1: DIC production as a proxy for microbial respiration in salt marsh sediments from three distinct depth horizons (shallow 0-5cm, mid 10-15cm, deep 20-25cm) that span a range of biological availability. The addition of NO3- (green) stimulated DIC production relative to unenriched sediments, regardless of sediment depth. All samples were run under anoxic conditions (without the presence of oxygen), closely matching that of normal salt marsh sediments.

Surprisingly, NO₃^–addition stimulated decomposition of organic matter at all depths, with the highest decomposition rates in the surface sediments. This suggests that there is a pool of “NO₃^–-labile” organic matter in marsh sediments that microbes can decompose under high-NO₃^– conditions that would otherwise remain stable. As human activities continue to enrich our coastal waters with NO₃^–through agricultural runoff, septic systems, and other pathways, it could inadvertently decrease coastal wetlands’ carbon storage capacity, with negative consequences for both blue carbon offsets and marsh sustainability in the face of sea level rise.

Authors:
Jennifer Bowen (Northeastern University)
Ashley Bulseco (MBL/WHOI)
Anne Giblin (MBL)

Krillin’ it with poop: Highlighting the importance of Antarctic krill in ocean carbon and nutrient cycling

Posted by mmaheigan

· Tuesday, February 4th, 2020

Scientists have long known the role of Antarctic krill (Euphausia superba) in Southern Ocean ecosystems. Evidence is gathering about krill’s biogeochemical importance through releasing millions of faecal pellets in swarms and stimulating primary production through nutrient excretion. Here, we explore and synthesise the known impacts that this highly abundant and rather large species has on the environment. Krill exemplify how metazoa can play a dominant role in shaping ocean biogeochemistry, thus providing additional motivation for protecting certain harvested species.

Figure 1: The ecological roles of krill in Southern Ocean biogeochemical cycles, including releasing faecal pellets, excreting nutrients whilst grazing, and larval krill migrating throughout the water column, shedding exoskeletons, and feeding on the seabed.

A review published in Nature Communications uncovers at least 13 possible pathways by which Antarctic krill either influence the carbon sink or release fertilizing nutrients (Figure 1). Their large size (up to 7 cm) and swarming nature (millions of krill aggregate) enable krill to strongly impact ocean biogeochemistry. Swarms release large numbers of faecal pellets, overwhelming detritivores and resulting in a large sink of faecal carbon. Krill may physically mix nutrients from the deep ocean and become a decades-long carbon store in whale biomass. Antarctic krill larvae, which live near the sea-ice, undergo deeper diel vertical migrations compared to adult Antarctic krill (400 m vs. 200 m), so any carbon respired or faecal pellets released by larvae could remain in the deep ocean longer than those released by adult krill at a shallower depth; the larval krill contribution to carbon export has not been quantified. Furthermore, it is currently unknown how many krill larvae are removed from the Antarctic krill fishery as by-catch. Perhaps the biggest challenge in constraining the role of krill (adult and larvae) in biogeochemical cycles is our limited capacity to quantify the abundance and biomass of Antarctic krill, since shipboard sampling methods (nets or acoustics) have limited spatial and temporal coverage. Ultimately, the Southern Ocean is an important physical AND biological sink of carbon, and we must consider the role krill and other animals have in this cycle.

Figure 2: Processes in the biological carbon pump including the sinking of dead phytoplankton aggregates, zooplankton, krill and fish faecal pellets and dead animals. Microbial remineralisation is depicted through the return of particulate organic carbon to dissolved organic carbon (DOC) and eventually carbon dioxide.

Authors:
Emma Cavan (Imperial College London and University of Tasmania)
Anna Belcher (British Antarctic Survey)
Angus Atkinson (Plymouth Marine Laboratory)
Simeon Hill (British Antarctic Survey)
So Kawaguchi (Australian Antarctic Division)
Stacey McCormack (University of Tasmania)
Bettina Meyer (Alfred Wegener Institute for Polar and Marine Research and University of Oldenburg)
Stephen Nicol (University of Tasmania)
Lavenia Ratnarajah (University of Liverpool)
Katrin Schmidt (University of Plymouth)
Deborah Steinberg (Virginia Institute of Marine Science)
Geraint Tarling (British Antarctic Survey)
Philip Boyd (University of Tasmania and Antarctic Climate and Ecosystems Cooperative Research Centre)

Diatoms commit iron piracy with stolen bacterial gene

Posted by mmaheigan

· Tuesday, February 4th, 2020

Since diatoms carry out much of the primary production in iron-limited marine environments, constraining the details of how these phytoplankton acquire the iron they need is paramount to our understanding of biogeochemical cycles of iron-depleted high-nutrient low-chlorophyll (HNLC) regions. The proteins involved in this process are largely unknown, but McQuaid et al. (2018) scientists described a carbonate-dependent uptake protein that enables diatoms to access inorganic iron dissolved in seawater. As increasing atmospheric CO₂ results in decreased seawater carbonate ion concentrations, this iron uptake strategy may have an uncertain future. In a recent study published in PNAS, authors used CRISPR technology to characterize a parallel uptake system that requires no carbonate and is therefore not impacted by ocean acidification.

This system targets an organically complexed form of iron (siderophores, molecules that bind and transport iron in microorganisms) that is only produced by co-occurring microbes. Two genes are required to convert siderophores from a potent toxicant to an essential nutrient. One of these (FBP1) is a receptor that was horizontally acquired from siderophore-producing bacteria. The other (FRE2) is a eukaryotic reductase that facilitates the dissociation of Fe-siderophore complexes.

Figure caption: (A) Growth curves of diatom cultures ( • = WT, ◇ = ΔFBP1, ☐ = ΔFRE2) in low iron media. (B) Growth in same media with siderophores added. (C) Diatoms under 1000x magnification, brightfield. (D) mCherry-FBP1. (E) Plastid autofluorescence. (F) YFP-FRE2. (G) Phylogenetic tree of FBP1 and related homologs.

Are diatoms really stealing siderophores from hapless bacteria? The true nature of this interaction is unknown and may at times be mutualistic. For example, when iron availability limits the carbon supply to a microbial community, heterotrophic bacteria may benefit from using siderophores to divert iron to diatom companions. Further work is needed to understand the true ecological basis for this interaction, but these results suggest that as long as diatoms and bacteria co-occur, iron limitation in marine ecosystems will not be exacerbated by ocean acidification.

Authors:
Tyler Coale (Scripps Institution of Oceanography, J.Craig Venter Institute)
Mark Moosburner (Scripps Institution of Oceanography, J.Craig Venter Institute)
Aleš Horák (Biology Centre CAS, Institute of Parasitology, University of South Bohemia)
Miroslav Oborník (Biology Centre CAS, Institute of Parasitology, University of South Bohemia)
Katherine Barbeau (Scripps Institution of Oceanography)
Andrew Allen (Scripps Institution of Oceanography, J.Craig Venter Institute)

Also see joint post on the GEOTRACES website

Ocean iron fertilization commercialization: bad idea; Continued research: good idea

Posted by mmaheigan

· Tuesday, January 21st, 2020

Amidst little to no substantive global action on climate change mitigation, individuals and companies have been exploring various geoengineering strategies as a possible alternative. Ocean Iron Fertilization (OIF) is an ocean-based strategy that involves the addition of iron to the sunlit upper layers of the ocean in iron-limited areas such as the Southern Ocean in order to stimulate marine phytoplankton growth and increase drawdown of carbon dioxide. Authors of a recent technology review in the Journal of Science Policy & Governance argue that a market-based approach to Southern Ocean iron fertilization is not advisable, but recommends continued research into the matter.

Figure 1: Idealized schematic of carbon cycling and the biological in a natural High Nutrient Low Chlorophyll Region (HNLC) and an iron fertilized HLNC. White arrows represent carbon transport. The addition of iron may dramatically increase surface biomass but only a small fraction of that is additional sequestered in the deep ocean or the sea floor.

This study begins by asking whether or not fertilizing the Southern Ocean could actually create a sustainable carbon sink. A comprehensive literature review revealed that while iron fertilization almost certainly will stimulate new primary production, what is much less clear is how much of that carbon will sink out of the surface ocean and be sequestered long-term. Given the scientific uncertainty, it would be ill-advised to commercialize iron fertilization in emerging carbon offset markets. In addition to concerns about the fundamental feasibility and potential adverse side effect of fertilization, the study argues that any market framework would be corrupted by perverse incentives created by the inability to establish reliable baselines or to accurately and comprehensively document and quantify the effects of fertilization, thus making it impossible to provide fair and consistent compensation. Nevertheless, recent history shows that fertilization activity on unregulated voluntary offset markets motivated by the promise of an easy fix can and will continue to emerge. This study concludes that continued research is needed to constrain the public perception and clarify the reality of an iron bullet.

Author:
Tyler Rohr (MIT/WHOI, currently at US Department of Energy)

The past, present, and future of the ocean carbon cycle: A global data product with regional insights

Posted by mmaheigan

· Tuesday, January 21st, 2020

A new study published in Scientific Reports debuts a global data product of ocean acidification (OA) and buffer capacity from the beginning of the Industrial Revolution to the end of the century (1750-2100 C.E.). To develop this product, the authors linked one of the richest observational carbon dioxide (CO₂) data products (6^th version of the Surface Ocean CO₂ Atlas, 1991-2018, ~23 million observations) with temporal trends modeled at individual locations in the global ocean. By linking the modeled pH trends to the observed modern pH distribution, the climatology benefits from recent improvements in both model design and observational data coverage, and is likely to provide more accurate regional OA trajectories than the model output alone. The authors also show that air-sea CO₂ disequilibrium is the dominant mode of spatial variability for surface pH, and discuss why pH and calcium carbonate mineral saturation states (Omega), two important metrics for OA, show contrasting spatial variability. They discover that sea surface temperature (SST) imposes two large but cancelling effects on surface ocean pH and Omega, i.e., the effects of SST on (a) chemical speciation of the carbonic system; and (b) air-sea exchange of CO₂ and the subsequent DIC/TA ratio of the seawater. These two processes act in concert for Omega but oppose each other for pH. As a result, while Omega is markedly lower in the colder polar regions than in the warmer subtropical and tropical regions, surface ocean pH shows little latitudinal variation.

Figure 1. Spatial distribution of global surface ocean pH_T (total hydrogen scale, annually averaged) in past (1770), present (2000) and future (2100) under the IPCC RCP8.5 scenario.

This data product, which extends from the pre-Industrial era (1750 C.E.) to the end of this century under historical atmospheric CO₂ concentrations (pre-2005) and the Representative Concentrations Pathways (post-2005) of the Intergovernmental Panel on Climate Change (IPCC)’s 5^th Assessment Report, may be helpful to policy-makers and managers who are developing regional adaptation strategies for ocean acidification.

The published paper is available here: https://www.nature.com/articles/s41598-019-55039-4

The data product is available here: https://www.nodc.noaa.gov/oads/data/0206289.xml

Authors:
Li-Qing Jiang (University of Maryland and NOAA NCEI)
Brendan Carter (NOAA PMEL and University of Washington JISAO)
Richard Feely (NOAA PMEL)
Siv Lauvset, Are Olsen (University of Bergen and Bjerknes Centre for Climate Research, Norway)

Surface bacterial communities respond to rapid changes in the western Arctic

Posted by mmaheigan

· Tuesday, January 7th, 2020

During the western Arctic summer open water season, latitudinal differences in the physical and biogeochemical features of the surface water are apparent from the Bering Strait to the Chukchi Borderland. Lower latitude regions (i.e. Bering Strait to Chukchi Shelf) are primarily driven by the inflow of Pacific waters that supply nutrients and heat, leading to high primary production. Conversely, the higher latitude regions (i.e. Chukchi Borderland and Canada Basin) are relatively cold, fresh, and oligotrophic because the surface layer is influenced by freshwater inputs from melting ice and rivers via the Beaufort Gyre. Mixing of the two surface water masses in the western Arctic produces a physicochemical frontal zone (FZ) in the Chukchi Sea.

In a recent study published in Scientific Reports, authors used observations from summer 2017 to investigate latitudinal variations in bacterial community composition in surface waters between the Bering Strait and Chukchi Borderland and the underlying processes driving the changes. Results indicate three distinctive communities: 1) Southern Chukchi (SC) bacterial communities are associated with nutrient-rich conditions, including genera such as Sulfitobacter; 2) a northern Chukchi (NC) bacterial community that dominated by SAR clades, Flavobacterium, Paraglaciecola, and Polaribacter, genera associated with low nutrients and sea ice conditions. If climate-driven changes in the western Arctic continue along the same trajectory, it’s likely we will see altered bacterial communities. If the impact of warm, nutrient-rich Pacific water inflows dominates, it is likely that the productive SC region will expand and the FZ will move northward, leading to nutrient enrichment in the western Arctic (Figure 1). In response, bacterial communities would be dominated by organic matter decomposers, such as Sulfitobacter, due to high primary productivity. However, if the impact of sea-ice meltwater dominates, then the oligotrophic NC region will expand and the FZ will move southward, leading to nutrient depletion in western Arctic surface waters (Figure 1). Continued monitoring in this region will enhance our understanding of how bacterial communities respond (Figure 1b) to a rapidly changing western Arctic Ocean.

Figure 1. (a) Map of the August 2017 Ice Breaker RV Araon western Arctic Ocean sampling stations used in this study. The basemap shows the Chl-a concentration contour (blue to red background colors). Pink, green, and blue circles represent stations in the South Chukchi (SC), Frontal Zone (FZ), and Northern Chukchi (NC) regions. (b) Schematic diagram of surface bacterial community distribution in response to future western Arctic Ocean changes.

Authors:
Il-Nam Kim (Department of Marine Science, Incheon National University)
Sung-Ho Kang (Korea Polar Research Institute)
Eun Jin Yang (Korea Polar Research Institute)

Unexpected DOC additions in the deep Atlantic

Posted by mmaheigan

· Tuesday, January 7th, 2020

Oceanic dissolved organic carbon (DOC) ultimately exchanges with atmospheric CO₂ and thus represents an important carbon source/sink with consequence for climate. Most of the DOC is recalcitrant to microbial degradation, with some fractions surviving for thousands of years. Therefore, DOC in the deep ocean was thought to be stable or to decrease slowly over decades to centuries due to biotic and abiotic sinks. However, a study published in Global Biogeochemical Cycles shows that there are some zones of the deep Atlantic Ocean where recalcitrant DOC experiences net production. Using data from oceanographic cruises across the Atlantic Ocean, the authors first identified the major water masses in the basin and the percentage of each in every sample taken for DOC analysis. The study revealed net additions of 27 million tons of dissolved organic carbon per year in the deep South Atlantic. On the other hand, the North Atlantic serves as a net sink, removing 298 million tons of carbon annually. DOC production observed in the deep Atlantic is probably due to the sinking particles that solubilize into DOC, since DOC enrichment was most evident at latitudes characterized as elevated productivity divergence zones.

Figure 1. Water masses along GO-SHIP line A16 (colored dots) and recalcitrant DOC variations due to biogeochemical processes (black dots within each water mass) in the deep Atlantic Ocean. Water mass domains are defined as the set of samples with the corresponding water mass proportion ≥50%. Recalcitrant DOC latitudinal variations per water stratum due to biogeochemical processes (ΔDOC) is in μmol kg^-1. Numbers on the plots are DOC values for the corresponding dots. Scales (not shown) are the same for all the plots, from -4 to 6 μmol kg^-1. Positive (negative) ΔDOC indicates values higher (lower) than the average DOC calculated for each water mass using an optimum multiparameter (OMP) analysis. DOC = dissolved organic carbon. AAIW = Antarctic Intermediate Water; UNADW = upper North Atlantic Deep Water; ISOW = Iceland Scotland Overflow Water; CDW = Circumpolar Deep Water; WSDW = Weddell Sea Deep Water. Figure created with Ocean Data View (Schlitzer, 2015).

Considering that the net DOC production over the entire Atlantic basin euphotic zone is 0.70–0.75 Pg C year^-1, the authors estimated that 30–39% of that DOC is consumed in the deep Atlantic subsequent to its export by overturning circulation. The upper North Atlantic Deep Water (UNADW) acts as the primary sink, accounting for 66% of the recalcitrant DOC removal in the North Atlantic. Conversely, the Antarctic Intermediate Water (AAIW) is the primary recipient, with 45% of recalcitrant DOC production in the South Atlantic, closely followed by the old UNADW that gains 44% of the recalcitrant DOC in the southern basin.

The Atlantic works as a mosaic of water masses, where both removal and addition of recalcitrant DOC occurs, with the dominant term dependent on the origin, temperature, age and depth of the water masses. The production of recalcitrant DOC in the deep ocean should be considered in biogeochemical models dealing with the carbon cycle and climate.

Authors:
C. Romera-Castillo and J. L. Pelegrí (Instituto de Ciencias del Mar, CSIC, Spain)
M. Álvarez (Instituto Español de Oceanografía, Spain)
D. A. Hansell (University of Miami, USA)
X. A. Álvarez-Salgado (Instituto de Investigaciones Marinas, CSIC, Spain)

The ocean’s smallest phytoplankton may be bigger than we thought

Posted by mmaheigan

· Tuesday, December 17th, 2019

Flow cytometry can sort hundreds of thousands of phytoplankton cells in minutes, a tool that has been exploited for over thirty years in marine science. However, skilled analysts are still needed for manual interpretation of these cells into different types and then further into size distributions and optical properties.

In a recent study published in Applied Optics, the authors developed and implemented an automated scheme on the large Atlantic Meridional Transect flow cytometric database, which contains around 10⁴ samples and 10⁹ cells (the entire AMT flowcytometric dataset which spans a decade of transects (AMT18 – AMT27). This unique, well-calibrated dataset spans 100° of latitude between the UK and the Falklands, with multiple samples between 0-200m. The results clearly show that Prochlorococcus, very small marine cyanobacteria, are consistently larger than previously thought (>0.65 µm), and their size distribution reveals a distinctive double peak (0.75 µm and 1.75 µm) that varies strongly with depth. This is coupled with changes in Prochlorococcus optical properties, a term we have coined “opto-types.” By contrast, Synechococcus are typically 1.5 µm in diameter and more homogeneously dispersed.

Figure 1: North to South transect (bottom left) of the Atlantic Ocean showing the variability in the abundance (top left), size (top right) and refractive index (bottom right) of Prochlorococcus

This work has uncovered new information regarding the size distribution of the ocean’s smallest phytoplankton, which has implications for how energy is transferred between different biological organisms.

Authors:
Tim Smyth (Plymouth Marine Laboratory)
Glen Tarran (Plymouth Marine Laboratory)
Shubha Sathyendranath (Plymouth Marine Laboratory)

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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