nutrient cycling :: Ocean Carbon & Biogeochemistry

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Archive for nutrient cycling

Introducing the Coastal Ocean Data Analysis Product in North America (CODAP-NA)

Posted by mmaheigan

· Friday, October 22nd, 2021

Coastal ecosystems are hotspots for commercial and recreational fisheries, and aquaculture industries that are susceptible to change or economic loss due to ocean acidification. These coastal ecosystems support about 90% of the global fisheries yield and 80% of the known marine fish species, and sustain ecosystem services worth $27.7 Trillion globally (a number larger than the U.S. economy). Despite the importance of these areas and economies, internally-consistent data products for water column carbonate and nutrient chemistry data in the coastal ocean—vital to understand and predict changes in these systems—currently do not exist. A recent study published in Earth Syst. Sci. Data compiled and quality controlled discrete sampling-based data—inorganic carbon, oxygen, and nutrient chemistry, and hydrographic parameters collected from the entire North American ocean margins—to create a data product called the Coastal Ocean Data Analysis Product for North America (CODAP-NA) to fill the gap. This effort will promote future OA research, modeling, and data synthesis in critically important coastal regions to help advance the OA adaptation, mitigation, and planning efforts by North American coastal communities; and provides a foothold for future synthesis efforts in the coastal environment.

Figure caption. Sampling stations of the CODAP-NA data product.

Authors:
Li-Qing Jiang (University of Maryland; NOAA NCEI)
Richard A. Feely (NOAA PMEL)
Rik Wanninkhof (NOAA AOML)
Dana Greeley (NOAA PMEL)
Leticia Barbero (University of Miami; NOAA AOML)
Simone Alin (NOAA PMEL)
Brendan R. Carter (University of Washington; NOAA PMEL)
Denis Pierrot (NOAA AOML)
Charles Featherstone (NOAA AOML)
James Hooper (University of Miami; NOAA AOML)
Chris Melrose (NOAA NEFSC)
Natalie Monacci (University of Alaska Fairbanks)
Jonathan Sharp (University of Washington; NOAA PMEL)
Shawn Shellito (University of New Hampshire)
Yuan-Yuan Xu (University of Miami; NOAA AOML)
Alex Kozyr (University of Maryland; NOAA NCEI)
Robert H. Byrne (University of South Florida)
Wei-Jun Cai (University of Delaware)
Jessica Cross (NOAA PMEL)
Gregory C. Johnson (NOAA PMEL)
Burke Hales (Oregon State University)
Chris Langdon (University of Miami)
Jeremy Mathis (Georgetown University)
Joe Salisbury (University of New Hampshire)
David W. Townsend (University of Maine)

Using BGC-Argo to obtain depth-resolved net primary production

Posted by mmaheigan

· Friday, July 23rd, 2021

Net primary production (NPP)—the organic carbon produced by the phytoplankton minus the organic carbon respired by phytoplankton themselves—serves as a major energy source of the marine ecosystem. Traditional methods for measuring NPP rely on ship-based discrete sampling and bottle incubations (e.g., ¹⁴C incubation), which introduce potential artifacts and limit the spatial and temporal data coverage of the global ocean. The global distribution of NPP has been estimated using satellite observations, but the satellite remote sensing approach cannot provide direct information at depth.

Figure 1. Panel A. Trajectories of 5 BGC-Argo and 1 SOS-Argo with the initial float deployment locations denoted by filled symbols. The dash-line at 47° N divided the research area into the northern (temperate) and southern (subtropical) regions. Stars indicate ship stations where ¹⁴C NPP values were measured during NAAMES cruises and compared with NPP from nearby Argo floats. Panels B and C. Monthly climatologies of net primary production (NPP, mmol m^-3 d^-1) profiles in the northern and southern regions of the research area, derived from BGC-Argo measurements using the PPM model. The shadings indicate one standard deviation. The red dotted line indicates mixed layer depth (MLD, m), and the yellow dashed line shows euphotic depth (Z_1%, m).

To fill this niche, a recent study in Journal of Geophysical Research: Biogeosciences, applied bio-optical measurements from Argo profiling floats to study the year-round depth-resolved NPP of the western North Atlantic Ocean (39° N to 54° N). The authors calculated NPP with two bio-optical models (Carbon-based Productivity Model, CbPM; and Photoacclimation Productivity Model, PPM). A comparison with NPP profiles from ¹⁴C incubation measurements showed advantages and limitations of both models. CbPM reproduced the magnitude of NPP in most cases, but had artifacts in the summer (a large NPP peak in the subsurface) due to the subsurface chlorophyll maximum caused by photoacclimation. PPM avoided the artifacts in the summer from photoacclimation, but the magnitude of PPM-derived NPP was smaller than the ¹⁴C result. Latitudinally varying NPP were observed, including higher winter NPP/lower summer NPP in the south, timing differences in NPP seasonal phenology, and different NPP depth distribution patterns in the summer months. With a 6-month record of concurrent oxygen and bio-optical measurements from two Argo floats, the authors also demonstrated the ability of Argo profiling floats to obtain estimates of the net community production (NCP) to NPP ratio (f-ratio), ranging from 0.3 in July to -1.0 in December 2016.

This work highlights the utility of float bio-optical profiles in comparison to traditional measurements and indicates that environmental conditions (e.g. light availability, nutrient supply) are major factors controlling the seasonality and spatial (horizontal and vertical) distributions of NPP in the western North Atlantic Ocean.

Authors:
Bo Yang (University of Virginia, UM CIMAS/NOAA AOML)
James Fox (Oregon State University)
Michael J. Behrenfeld (Oregon State University)
Emmanuel S. Boss (University of Maine)
Nils Haëntjens (University of Maine)
Kimberly H. Halsey (Oregon State University)
Steven R. Emerson (University of Washington)
Scott C. Doney (University of Virginia)

Species loss alters ecosystem function in plankton communities

Posted by mmaheigan

· Monday, February 8th, 2021

Climate change impacts on the ocean such as warming, altered nutrient supply, and acidification will lead to significant rearrangement of phytoplankton communities, with the potential for some phytoplankton species to become extinct, especially at the regional level. This leads to the question: What are phytoplankton species’ redundancy levels from ecological and biogeochemical standpoints—i.e. will other species be able to fill the functional ecological and/or biogeochemical roles of the extinct species? Authors of a paper published recently in Global Change Biology explored these ideas using a global three-dimensional computer model with diverse planktonic communities, in which single phytoplankton types were partially or fully eliminated. Complex trophic interactions such as decreased abundance of a predator’s predator led to unexpected “ripples” through the community structure and in particular, reductions in carbon transfer to higher trophic levels. The impacts of changes in resource utilization extended to regions beyond where the phytoplankton type went extinct. Redundancy appeared lowest for types on the edges of trait space (e.g., smallest) or those with unique competitive strategies. These are responses that laboratory or field studies may not adequately capture. These results suggest that species losses could compound many of the already anticipated outcomes of changing climate in terms of productivity, trophic transfer, and restructuring of planktonic communities. The authors also suggest that a combination of modeling, field, and laboratory studies will be the best path forward for studying functional redundancy in phytoplankton.

Figure caption: Examples of the modelled ecological and biogeochemical responses to the extinction of different phytoplankton species.Figure caption: Examples of the modelled ecological and biogeochemical responses to the extinction of different phytoplankton species.

Authors:
Stephanie Dutkiewicz (Massachusetts Institute of Technology)
Philip W. Boyd (Institute for Marine and Antarctic Studies, University of Tasmania)
Ulf Riebesell (GEOMAR Helmholtz Centre for Ocean Research Kiel)

The role of nutrient trapping in promoting shelf hypoxia in the southern Benguela upwelling system

Posted by mmaheigan

· Thursday, September 3rd, 2020

The southern Benguela upwelling system (SBUS) off southwest Africa is an exceptionally fertile ocean region that supports valuable commercial fisheries. The productivity of this system derives from the upwelling of nutrient-rich Subantarctic Mode Water, and from the concurrent entrainment of nutrients regenerated proximately on the expansive continental shelf. The SBUS is prone to severe seasonal hypoxic events that decimate regional fisheries, occurrences of which are inextricably linked to the inherent nutrient dynamics. In a study recently published in JGR Oceans, the authors sought to understand the mechanisms sustaining elevated concentrations and seasonally-variable distributions of nutrients in the SBUS, in relation to the subsurface oxygen content. Inter-seasonal measurements of nutrients and nitrate isotope ratios across the SBUS in 2017 revealed that upwards of 48% (summer) and 63% (winter) of the on‐shelf nutrients derived from regeneration in situ. The severity of hypoxia at the shelf bottom, in turn, correlated with the incidence of regenerated nutrients. The accrual of nutrients at the shelf bottom appears to be aided by hydrographic fronts that restrict offshore transport, trapping regenerated nutrients on the SBUS shelf and increasing the pool of nutrients available for upwelling – ultimately contributing to hypoxic events. This study underscores the need – if we are to develop a mechanistic and predictive understanding of hypoxia in the SBUS and elsewhere – to elucidate the role of shelf circulation in promoting the accrual of regenerated nutrients on the continental shelf. The next step is to combine new and existing observations with quantitative simulations to further interrogate the coupled physical-biogeochemical mechanisms that modulate the intensity of hypoxia.

Figure caption: Schematic of proposed nutrient-trapping mechanism: Deep nutrient-rich Subantarctic Mode Water (SAMW) acquires more nutrients as it passes over the shelf sediments from the regeneration of exported particulate organic material (POM). The production of this POM is fueled by nutrients stripped from the surface waters advecting back off-shore. The thickness of the arrows represents nutrient concentrations. Triangles indicate the positions of the Shelf Break Front (SBF) and Columbine Front (CF), coincident with an observed subduction of the Ekman layer and downwelling at the inner front boundary.

Authors
Raquel Flynn (University of Cape Town)
Julie Granger (University of Connecticut)
Jennifer Veitch (South African Environmental Observation Network)
Samantha Siedlecki (University of Connecticut)
Jessica Burger (University of Cape Town)
Keshnee Pillay (South Africa Department of Environment, Forestry and Fisheries)
Sarah Fawcett (University of Cape Town)

The competing impacts of climate change and nutrient reductions on dissolved oxygen in Chesapeake Bay

Posted by mmaheigan

· Wednesday, June 12th, 2019

The Chesapeake Bay is a 200-mile-long estuary with both economic and ecological importance to the mid-Atlantic region. Runoff, pollution, and algae blooms resulting in hypoxia have been major issues over the past 50 years, and much work has been done to improve the water quality and health of the Bay. Dissolved oxygen concentrations will be altered in response to climate change, but whether this will counteract the benefits of reduced nutrient loading is an important scientific and management question. Specifically, what are the impacts of climate change on future Chesapeake Bay hypoxia and on progress towards meeting water quality standards associated with the Chesapeake Bay Total Maximum Daily Load (TMDL)?

(Left) Latitudinal along-bay dissolved oxygen (DO) transects for the Base scenario (Base+noCC) and TMDL scenario (TMDL+noCC) without climate change; transects for the absolute and percent changes in DO due to climate change (TMDL+CC). (Right) Cumulative hypoxic volume for six ranges of DO concentrations for each of the study years and each of the scenarios (colored circles).

A recent study in Biogeosciences quantified the competing impacts of climate change and nutrient reductions on Chesapeake Bay hypoxia. The authors used a 3-D modeling system along with projected mid-21st century changes in temperature, freshwater flow, and sea level, assuming fully achieved goals of TMDL nutrient reductions. Of these three climate change factors, increased temperature most strongly impacts future hypoxia, primarily due to decreased solubility year-round and increased respiration and remineralization in the spring. Sea level rise is expected to exhibit a small positive impact resulting from increased estuarine circulation and reduced residence time. Increased river flow is anticipated to exert a small negative impact due to increased nutrient loading.

These results demonstrate that climate change may limit the effectiveness of future management actions aimed at reducing nutrient inputs to the Chesapeake Bay. However, the positive impacts of mandated nutrient reductions still outweigh the negative impacts of climate change. Given that climate impacts are expected to intensify with time and large uncertainties remain among different climate projections, it is critical to continue examining how the Bay may evolve in the future by assessing the sensitivity of oxygen concentrations to different climate change scenarios.

Authors:
Isaac D. Irby (VIMS, William & Mary)
Marjorie A. M. Friedrichs (VIMS, William & Mary)
Fei Da (VIMS, William & Mary)
Kyle E. Hinson (VIMS, William & Mary)

New BioGEOTRACES data sets: Connecting pieces of the microbial biogeochemical puzzle

Posted by mmaheigan

· Wednesday, December 19th, 2018

Microorganisms play a central role in the transfer of matter and energy in the marine food web. Microbes depend on micronutrients (e.g. iron, cobalt, zinc, and a host of other trace metals) to catalyze key biogeochemical reactions, and their metabolisms, in turn, directly affect the cycling, speciation, and bioavailability of these compounds. One might therefore expect that marine microbial community structure and the functions encoded within their genomes might be related to trace metal availability in the ocean. The overall productivity of marine ecosystems—i.e. the amount of carbon fixed through photosynthesis—could in turn be influenced by trace metal concentrations.

For over a decade, the international GEOTRACES program has been mapping the distribution and speciation of trace metals across vast ocean regions. Given the important relationship between trace metals and the function of marine ecosystems, biological oceanographers collaborate with GEOTRACES scientists to simultaneously probe the biotic communities at some sampling sites, allowing these biological data to be interpreted in the context of detailed chemical and physical measurements.

Figure 1. Locations and depths of samples. (a) Global map of sample locations. Single cell genomes are represented by miniaturized stacked dot-plots (each dot represents one single cell genome), with organism group indicated by color, and cells categorized as “undetermined” if robust placement within known phylogenetic groups failed due to low assembly completeness/quality or missing close references. Larger points correspond to stations on associated GEOTRACES sections where metagenomes were also collected. (b) Depth distribution of metagenome samples along each of the four GEOTRACES sections. Transect distances are calculated relative to the first station sampled in the indicated orientation. For clarity, the depth distribution of samples collected below 250 m are not shown to scale (ranging from 281–5601 m). Adapted from Berube et al. (2018) Sci. Data 5:180154 and Biller et al. (2018) Sci. Data 5:180176.

Two recent papers published in Scientific Data describes two new, large-scale biological data sets that will facilitate studies aimed at understanding how microbes and metals relate to one another. Collected on four different sets of GEOTRACES cruises (Figure 1), these papers report the public availability of hundreds of single cell genomes and microbial community metagenomes from the Pacific and Atlantic Oceans. The single cell genomes focus on the marine photosynthetic bacteria Prochlorococcus and Synechococcus and how they and other community members vary in different regions of the ocean. The metagenomic sequences provide snapshots of the entire microbial community found in each of these samples, yielding a broad overview of which microbes—and which genes, including those important for understanding nutrient cycling—are found in each sample. These two datasets are complementary and further enhanced by the wealth of chemical and physical data collected by GEOTRACES scientists on the same water samples. In particular, iron is of key interest, since it often limits primary productivity. These data sets can directly link iron availability with microbial community structure and gene content across ocean basins.

With these data, researchers can now ask questions such as how microbes have evolved in response to the availability or limitation of key nutrients and explore which organisms may be contributing to biogeochemical cycles in different parts of the global ocean. The extensive suite of chemical and physical measurements associated with these sequence data underscore their potential to reveal important relationships between trace metals and the microbial communities that drive biogeochemical cycles. These data sets also encourage cross-disciplinary collaborations and provide baseline information as society faces the challenges and uncertainties of a changing climate.

Authors:
Paul M. Berube (Massachusetts Institute of Technology)
Steven J. Biller (Massachusetts Institute of Technology; current affiliation: Wellesley College)
Sallie W. Chisholm (Massachusetts Institute of Technology)

When marine-terminating glaciers ‘pump’ the ocean

Posted by mmaheigan

· Wednesday, October 10th, 2018

How will increasing meltwater from Greenland affect the biogeochemistry of the ocean? Release of meltwater into the ocean has physical and biogeochemical effects on the local water column. With respect to nutrient availability, meltwater supplies the bioessential nutrients iron and silicic acid but is deficient in nitrate and phosphate. However, despite very low meltwater nitrate and phosphate concentrations, pronounced summertime phytoplankton blooms are observed in many, though not all, of Greenland’s large fjord systems. These unusual summertime blooms are associated with meltwater from marine-terminating glaciers. So if the meltwater itself is not supplying nitrate and phosphate that these blooms require, what is the source of the nutrients that support these blooms?

An illustration of how changing the depth of a glacier affects downstream productivity

A recent study published in Nature Communications shows that when meltwater is released below sea level under large marine-terminating glaciers, it rises rapidly towards the surface in buoyant discharge plumes. As these plumes rise, they entrain large quantities of deep, nutrient-rich seawater. This vertical transport, or ‘pumping’, of these nutrients to the surface sustains unusually high summertime productivity in Greenland’s fjords. Conversely, when meltwater is released at the ocean surface, primary production is reduced because the meltwater itself lacks the nitrate and phosphate required to fuel phytoplankton blooms. Consequently, the inland retreat of Greenland’s large marine-terminating glaciers is ultimately bad news for summertime marine phytoplankton communities. As the depth of the marine-terminating glaciers shoals, their associated nutrient ‘pumps’ collapse, which will likely have negative effects on primary production and associated inshore fisheries.

Authors:
M.J. Hopwood (GEOMAR)
D. Carroll (Jet Propulsion Laboratory)
T.J. Browning (GEOMAR)
L. Meire (Royal Netherlands Institute for Sea Research and Greenland Climate Research Centre)
J. Mortensen (Greenland Climate Research Centre)
S. Krisch (GEOMAR)
E.P. Achterberg (GEOMAR)

Primary productivity à la mode

Posted by mmaheigan

· Wednesday, October 10th, 2018

The presence of large-scale Ekman downwelling is the textbook explanation for low nutrient concentrations, and hence low productivity, in subtropical gyres. However, recent research has suggested that mesoscale eddies oppose and substantially reduce this downwelling, a process known as eddy cancellation (Doddridge et al, 2016). Eddy cancellation represents a substantial alteration to the widely accepted notion of large-scale Ekman downwelling in subtropical gyres, and motivates our study of the processes that determine nutrient concentration within subtropical gyres.

Figure 1: Sensitivity experiments for mode water thickness (h_mode) with two values of residual Ekman pumping. a) With no residual Ekman pumping, phosphate concentration responds strongly to mode water thickness. b) When Ekman pumping is strong, phosphate concentration does not depend on mode water thickness. The dashed lines represent transects of climatological phosphate concentration in the euphotic zone of the North Atlantic subtropical gyre (Garcia et al., 2013).

A recent paper published in the Journal of Geophysical Research: Oceans and featured in an MIT News article describes an idealized model for nutrient concentration in subtropical gyres that can account for this reduction in Ekman pumping. The model predicts that surface productivity is sensitive to the thickness of the underlying subtropical mode water layer, provided that the residual Ekman pumping is small (Figure 1). Comparison of this prediction with observations from the Bermuda Atlantic Time series Study (BATS) shows that surface productivity increases as the thickness of the underlying mode water increases (Figure 2), as predicted by the idealized model in the absence of substantial Ekman pumping.

Figure 2: Annually averaged primary productivity and mode water thickness from the BATS dataset. The linear fit between mode water thickness and primary productivity is statistically significant (p ≈ 0.027) and explains 19.5% of the variance in primary productivity.

The observed relationship between productivity and mode water thickness at BATS is consistent with a small residual Ekman pumping, indicating highly effective eddy cancellation in the subtropical North Atlantic. Previous research (Palter et al., 2005) has suggested that as the subtropical mode water layer thickens, it blocks nutrient entrainment from below, resulting in lower productivity in the euphotic zone. However, this study suggests that a thicker subtropical mode water layer actually increases the surface nutrient concentrations by promoting more effective recycling of nutrients within the gyre. With a thicker mode water layer, more of the nutrients in the particulate flux are remineralized before they pass through the thermocline and become isolated from the surface ocean. This means that a thicker mode water layer leads to higher nutrient concentrations and supports primary productivity in subtropical gyres. This represents a fundamental change in our understanding of how nutrients are supplied to the surface waters of subtropical gyres.

Authors:
Edward Doddridge (Department of Earth, Atmospheric and Planetary Sciences, MIT)
David Marshall (Atmospheric, Oceanic & Planetary Physics, University of Oxford)

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Sinking particles as biogeochemical hubs for trace metal cycling and release

Posted by mmaheigan

· Thursday, September 14th, 2017

The extent to which the return of major and minor elements to the dissolved phase in the deep ocean (termed remineralization) is decoupled plays a major role in setting patterns of nutrient limitation in the global ocean. It is well established that major elements such as phosphorus, silicon, and carbon are released at different rates from sinking particles, with major implications for nutrient recycling. Is this also the case for trace metals?

A recent publication by Boyd et al. in Nature Geoscience provides new insights into the biotic and abiotic processes that drive remineralization of metals in the ocean. Particle composition changes rapidly with depth with both physical (disaggregation) and biogeochemical (grazing; desorption) processes leading to a marked decrease in the total surface area of the particle population. The proportion of lithogenic metals in sinking particles also appears to increase with depth, as the biogenic metals may be more labile and hence more readily removed.

Findings from GEOTRACES process studies revealed that release rates for trace elements such as iron, nickel, and zinc vary from each other. Microbes play a key role in determining the turnover rates for nutrients and trace elements. Decoupling of trace metal recycling in the surface ocean and below may result from their preferential removal by microbes to satisfy their nutritional requirements. In addition, the chemistry operating on particle surfaces plays a pivotal role in determining the specific fates of each trace metal. Teasing apart these factors will take time, as there is a complex interplay between chemical and biological processes. Improving our understanding is crucial, as these processes are not currently well represented by state-of-the-art ocean biogeochemical models.

Figure caption: Rapid changes in the characteristics of sinking particles over the upper 200 m as evidenced by: a) differential release of trace metals from sinking diatoms; b) changes in proportion of lithogenic versus biogenic materials; and c) ten-fold decrease in total particle surface area.

Authors:
Philip Boyd (IMAS, Australia)
Michael Ellwood (ANU, Australia)
Alessandro Tagliabue (Liverpool, UK)
Ben Twining (Bigelow, USA)

Relevant links:
GEOTRACES Digest: Iron Superstar

Joint workshop with GEOTRACES in August 2016: Biogeochemical Cycling of Trace Elements within the Ocean

Funding for the Ocean Carbon & Biogeochemistry Project Office is provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA). The OCB Project Office is housed at the Woods Hole Oceanographic Institution.

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